Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34777 * 120.00040 * 2 1 4 4 O 1.21280 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.50702 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.38288 * 119.92073 * 269.72314 * 6 5 3 8 8 C 1.38100 * 120.07812 * 179.76224 * 7 6 5 9 9 C 1.38939 * 119.91519 * 0.49234 * 8 7 6 10 10 N 1.39677 * 120.07462 * 179.79012 * 9 8 7 11 11 C 1.39793 * 119.99505 * 319.98035 * 10 9 8 12 12 C 1.38772 * 120.11101 * 352.45539 * 11 10 9 13 13 C 1.38182 * 119.99333 * 179.74045 * 12 11 10 14 14 C 1.38356 * 120.20776 * 0.53608 * 13 12 11 15 15 C 1.38178 * 120.20740 * 359.74045 * 14 13 12 16 16 C 1.38715 * 120.01172 * 359.97438 * 15 14 13 17 17 O 1.35789 * 120.10546 * 180.02562 * 16 15 14 18 18 C 1.34802 * 116.99930 * 6.39320 * 17 16 15 19 19 H 1.07999 * 119.99828 * 354.70978 * 18 17 16 20 20 C 1.38626 * 120.00272 * 174.71114 * 18 17 16 21 21 N 1.31573 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99518 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47106 * 90.00300 * 22 20 18 24 24 H 1.48500 * 109.46788 * 209.99926 * 22 20 18 25 25 H 1.48495 * 109.47312 * 329.99816 * 22 20 18 26 26 C 1.38938 * 119.85432 * 359.75967 * 9 8 7 27 27 C 1.38094 * 119.91678 * 0.02562 * 26 9 8 28 28 H 1.08991 * 109.47337 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47177 * 300.00392 * 1 2 3 30 30 H 1.09003 * 109.47096 * 60.00061 * 1 2 3 31 31 H 0.96996 * 119.99931 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46810 * 299.99594 * 5 3 2 33 33 H 1.08997 * 109.46928 * 59.99942 * 5 3 2 34 34 H 1.07996 * 119.96403 * 0.02562 * 7 6 5 35 35 H 1.07993 * 120.04546 * 180.25545 * 8 7 6 36 36 H 0.97001 * 120.00747 * 139.98760 * 10 9 8 37 37 H 1.07997 * 120.00339 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.89790 * 180.27591 * 13 12 11 39 39 H 1.07995 * 119.89193 * 179.76425 * 14 13 12 40 40 H 1.08001 * 119.99159 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99832 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.04356 * 179.97438 * 26 9 8 43 43 H 1.08002 * 119.96122 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1483 2.5880 -0.0011 7 6 4.3833 3.2361 -1.1999 8 6 4.8390 4.5397 -1.2042 9 6 5.0711 5.1966 -0.0021 10 7 5.5362 6.5136 -0.0025 11 6 6.5028 6.9131 -0.9300 12 6 7.1155 5.9726 -1.7460 13 6 8.0667 6.3708 -2.6657 14 6 8.4196 7.7047 -2.7690 15 6 7.8191 8.6476 -1.9568 16 6 6.8588 8.2584 -1.0346 17 8 6.2671 9.1835 -0.2359 18 6 6.5584 10.4772 -0.4780 19 1 7.2997 10.7339 -1.2203 20 6 5.9067 11.4780 0.2258 21 7 6.1915 12.7406 -0.0101 22 14 4.6242 11.0337 1.5092 23 1 5.2813 10.8747 2.8314 24 1 3.6082 12.1139 1.5882 25 1 3.9634 9.7596 1.1284 26 6 4.8390 4.5407 1.2005 27 6 4.3791 3.2386 1.1973 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6532 0.8892 33 1 4.0089 0.6535 -0.8908 34 1 4.2061 2.7237 -2.1339 35 1 5.0183 5.0468 -2.1407 36 1 5.1887 7.1511 0.6408 37 1 6.8455 4.9300 -1.6653 38 1 8.5393 5.6381 -3.3030 39 1 9.1664 8.0098 -3.4870 40 1 8.0975 9.6878 -2.0401 41 1 5.7357 13.4409 0.4826 42 1 5.0188 5.0482 2.1367 43 1 4.1988 2.7279 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -22.855678 kcal Electronic energy + Delta-G solvation = -26237.348088 eV Core-core repulsion = 22440.408177 eV Total energy + Delta-G solvation = -3796.939911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46212 -40.81637 -39.90599 -38.28472 -36.48553 -35.50982 -34.44491 -32.96978 -32.03359 -30.83273 -30.24058 -28.42455 -27.23053 -26.35191 -23.98672 -23.48397 -22.60300 -22.13274 -21.27075 -19.85586 -19.26805 -18.39791 -18.10999 -17.64088 -17.17967 -16.62783 -16.41324 -16.04410 -15.87592 -15.82153 -15.53734 -15.34922 -14.96902 -14.73663 -14.57812 -14.34577 -14.20095 -14.10817 -14.00586 -13.56932 -13.21275 -13.08162 -12.81405 -12.75359 -12.62670 -12.43490 -12.22093 -12.05576 -11.99598 -11.56622 -11.33871 -10.93719 -10.91760 -10.07688 -9.80207 -9.66780 -9.25354 -8.49679 -8.07291 -6.17892 0.24412 0.51497 0.62824 0.87259 1.27219 1.31358 1.45684 1.72523 2.24506 2.36127 2.37726 2.78440 2.90561 3.05705 3.18427 3.79942 3.94620 4.07637 4.10343 4.17854 4.29736 4.39797 4.44445 4.51095 4.53235 4.60954 4.63236 4.66376 4.75403 4.81305 4.94076 4.97889 5.08886 5.14697 5.25022 5.40199 5.47298 5.50722 5.58319 5.64733 5.69031 5.78856 5.90201 5.99025 6.16716 6.52485 6.64678 6.69138 6.85274 7.37623 7.60407 8.62363 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002905 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.420085 B = 9635.046972 C =11057.339733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.725 5.725 3 C 0.504 3.496 4 O -0.587 6.587 5 C -0.087 4.087 6 C -0.105 4.105 7 C -0.079 4.079 8 C -0.170 4.170 9 C 0.162 3.838 10 N -0.689 5.689 11 C 0.130 3.870 12 C -0.149 4.149 13 C -0.136 4.136 14 C -0.120 4.120 15 C -0.203 4.203 16 C 0.067 3.933 17 O -0.247 6.247 18 C -0.389 4.389 19 H 0.081 0.919 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.173 4.173 27 C -0.078 4.078 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.421 0.579 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.404 0.596 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.283 0.717 42 H 0.123 0.877 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -32.294 -0.530 32.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.378 5.378 3 C 0.292 3.708 4 O -0.466 6.466 5 C -0.127 4.127 6 C -0.107 4.107 7 C -0.097 4.097 8 C -0.191 4.191 9 C 0.065 3.935 10 N -0.312 5.312 11 C 0.031 3.969 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.223 4.223 16 C 0.016 3.984 17 O -0.156 6.156 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.195 4.195 27 C -0.097 4.097 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.258 0.742 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.141 0.859 36 H 0.239 0.761 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.158 0.842 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.848 -31.453 -0.362 31.994 hybrid contribution -0.333 1.271 0.691 1.485 sum -6.181 -30.182 0.329 30.810 Atomic orbital electron populations 1.21607 0.79611 1.03987 1.00926 1.45753 1.07977 1.08866 1.75228 1.21248 0.91246 0.83413 0.74891 1.90758 1.71587 1.33460 1.50805 1.20657 0.89644 0.94217 1.08139 1.19472 1.01698 0.96676 0.92816 1.21040 0.96588 0.93371 0.98712 1.21162 1.04248 0.96862 0.96805 1.18002 0.96377 0.84269 0.94819 1.41991 1.42661 1.09619 1.36922 1.17308 0.94100 0.89607 0.95836 1.21010 0.99386 0.98645 0.98052 1.21049 0.98711 0.95793 0.99876 1.21045 1.00497 0.93036 0.99380 1.21163 1.00319 1.00723 1.00089 1.19121 0.96633 0.88239 0.94361 1.83404 1.64752 1.15363 1.52072 1.20646 1.23339 0.78858 1.23669 0.90160 1.25189 0.99846 0.93694 1.00174 1.69734 1.44248 0.99549 1.43211 0.85269 0.78516 0.78429 0.78808 1.19011 1.19621 1.18939 1.21083 1.05916 0.96002 0.96469 1.21009 0.96723 0.93260 0.98701 0.87052 0.93825 0.93832 0.74153 0.84922 0.84839 0.83845 0.85937 0.76091 0.83181 0.82633 0.84203 0.87103 0.90763 0.85916 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.70 127.77 1.37 2.19 16 2 N -0.73 -6.80 5.71 -484.51 -2.77 -9.57 16 3 C 0.50 8.62 7.82 87.66 0.69 9.30 16 4 O -0.59 -17.28 16.03 -3.03 -0.05 -17.33 16 5 C -0.09 -0.95 5.83 29.10 0.17 -0.78 16 6 C -0.11 -2.12 4.38 -19.84 -0.09 -2.21 16 7 C -0.08 -1.78 9.69 22.25 0.22 -1.57 16 8 C -0.17 -4.91 7.35 22.41 0.16 -4.74 16 9 C 0.16 5.29 5.93 38.23 0.23 5.51 16 10 N -0.69 -26.66 5.47 -180.11 -0.99 -27.65 16 11 C 0.13 5.32 6.45 38.31 0.25 5.57 16 12 C -0.15 -5.01 7.98 22.38 0.18 -4.83 16 13 C -0.14 -4.13 10.04 22.28 0.22 -3.91 16 14 C -0.12 -4.22 10.04 22.28 0.22 -4.00 16 15 C -0.20 -9.16 9.16 22.37 0.20 -8.95 16 16 C 0.07 3.23 6.66 22.70 0.15 3.38 16 17 O -0.25 -13.59 7.85 -22.89 -0.18 -13.77 16 18 C -0.39 -23.30 9.95 67.91 0.68 -22.63 16 19 H 0.08 5.04 5.45 -2.91 -0.02 5.03 16 20 C 0.01 0.51 5.49 84.82 0.47 0.98 16 21 N -0.93 -56.55 13.96 21.61 0.30 -56.25 16 22 Si 0.97 46.85 28.62 68.60 1.96 48.81 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.17 -4.92 9.97 22.40 0.22 -4.70 16 27 C -0.08 -1.78 9.69 22.25 0.22 -1.56 16 28 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.42 0.46 8.83 -92.71 -0.82 -0.36 16 32 H 0.13 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.13 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.12 3.66 6.48 -2.91 -0.02 3.64 16 36 H 0.40 16.61 8.22 -92.71 -0.76 15.84 16 37 H 0.15 4.32 5.25 -2.91 -0.02 4.31 16 38 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.11 5.45 5.65 -2.91 -0.02 5.43 16 41 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -80.36 365.16 3.33 -77.04 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.51 Total: 31.66 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 5.55 Total: -32.94 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -3.45 Total: -93.47 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.23 Total: -31.10 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.96 Total: 48.81 kcal Total: -80.36 3.33 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.181 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds