Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99657 * 2 1 4 4 C 1.34773 * 120.00469 * 180.02562 * 2 1 3 5 5 O 1.21555 * 120.00019 * 3.97780 * 4 2 1 6 6 C 1.47857 * 120.00230 * 183.97683 * 4 2 1 7 7 C 1.39624 * 120.10903 * 313.59124 * 6 4 2 8 8 C 1.37989 * 120.01130 * 179.97438 * 7 6 4 9 9 C 1.38236 * 120.23145 * 359.70285 * 8 7 6 10 10 C 1.39011 * 120.21371 * 0.55304 * 9 8 7 11 11 N 1.39710 * 120.00547 * 179.74186 * 10 9 8 12 12 C 1.39781 * 120.00331 * 5.88481 * 11 10 9 13 13 C 1.38788 * 120.10753 * 250.12328 * 12 11 10 14 14 C 1.38180 * 119.99019 * 180.26896 * 13 12 11 15 15 C 1.38350 * 120.20766 * 359.74512 * 14 13 12 16 16 C 1.38170 * 120.21416 * 359.97269 * 15 14 13 17 17 C 1.38719 * 120.00710 * 0.02760 * 16 15 14 18 18 O 1.35787 * 120.10189 * 179.97438 * 17 16 15 19 19 C 1.34812 * 117.00243 * 354.17132 * 18 17 16 20 20 H 1.07998 * 119.99407 * 355.37201 * 19 18 17 21 21 C 1.38617 * 119.99834 * 175.37051 * 19 18 17 22 22 N 1.31570 * 120.00610 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46795 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46638 * 119.99981 * 23 21 19 26 26 H 1.48498 * 109.47062 * 240.00361 * 23 21 19 27 27 C 1.38713 * 119.98845 * 359.46923 * 10 9 8 28 28 H 1.09009 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47426 * 299.99489 * 1 2 3 30 30 H 1.09005 * 109.47309 * 60.00415 * 1 2 3 31 31 H 1.08994 * 109.47269 * 265.71802 * 3 2 1 32 32 H 1.09000 * 109.47038 * 25.71989 * 3 2 1 33 33 H 1.08995 * 109.46759 * 145.71288 * 3 2 1 34 34 H 1.08003 * 119.99280 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.88726 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.89442 * 180.27112 * 9 8 7 37 37 H 0.97000 * 120.00043 * 185.87814 * 11 10 9 38 38 H 1.07998 * 120.00147 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.88992 * 179.76050 * 14 13 12 40 40 H 1.07998 * 119.89131 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.99674 * 180.02562 * 16 15 14 42 42 H 0.96999 * 120.00723 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.11316 * 180.23244 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5335 -2.2186 -0.0740 6 6 3.6149 -1.1686 0.0883 7 6 4.3657 -0.3063 -0.7131 8 6 5.7429 -0.3090 -0.6282 9 6 6.3842 -1.1593 0.2531 10 6 5.6464 -2.0255 1.0516 11 7 6.2993 -2.8868 1.9370 12 6 7.6831 -2.7932 2.1104 13 6 8.5144 -3.7953 1.6298 14 6 9.8816 -3.7030 1.8075 15 6 10.4267 -2.6112 2.4593 16 6 9.6076 -1.6058 2.9361 17 6 8.2338 -1.6893 2.7625 18 8 7.4270 -0.7026 3.2308 19 6 8.0096 0.2700 3.9601 20 1 9.0578 0.2022 4.2112 21 6 7.2633 1.3572 4.3875 22 7 5.9863 1.4396 4.0820 23 14 8.0709 2.7053 5.3975 24 1 9.5048 2.3782 5.6030 25 1 7.9571 3.9989 4.6771 26 1 7.3931 2.8107 6.7145 27 6 4.2615 -2.0306 0.9733 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.4455 1.5451 -1.0247 32 1 1.5772 2.0463 0.4460 33 1 3.1144 1.1589 0.5789 34 1 3.8683 0.3630 -1.3995 35 1 6.3217 0.3585 -1.2493 36 1 7.4622 -1.1538 0.3183 37 1 5.7923 -3.5496 2.4314 38 1 8.0923 -4.6489 1.1204 39 1 10.5266 -4.4856 1.4363 40 1 11.4960 -2.5441 2.5950 41 1 10.0369 -0.7548 3.4440 42 1 5.4639 2.2001 4.3814 43 1 3.6861 -2.7001 1.5955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = 11.020799 kcal Electronic energy + Delta-G solvation = -27384.100371 eV Core-core repulsion = 23588.629454 eV Total energy + Delta-G solvation = -3795.470917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.11934 -39.43353 -38.00040 -36.51358 -35.43859 -34.66082 -32.33746 -30.79490 -30.27583 -29.08737 -27.95868 -27.14805 -26.17392 -25.39694 -22.94376 -22.01085 -21.66464 -20.99522 -19.26914 -18.03314 -17.47284 -17.18868 -16.30516 -16.13056 -15.79814 -15.42193 -15.10227 -14.76221 -14.67041 -14.09383 -13.75736 -13.68629 -13.38499 -13.14579 -13.05454 -12.99440 -12.76955 -12.59755 -12.39075 -12.27182 -11.94856 -11.76296 -11.42835 -11.24986 -11.00397 -10.98026 -10.92106 -10.84891 -10.51612 -9.85863 -9.68166 -9.46513 -8.91215 -8.64844 -8.40508 -8.23248 -7.41211 -6.80994 -6.50530 -4.09022 1.52459 1.89340 2.14985 2.26255 2.94784 3.07103 3.08855 3.13752 3.19467 3.88923 4.00432 4.37099 4.45226 4.72553 5.03338 5.11458 5.20987 5.31032 5.33962 5.36386 5.49676 5.57872 5.68543 5.70748 5.75218 5.80836 5.91569 5.92190 6.00650 6.07513 6.20122 6.32799 6.49189 6.55187 6.59694 6.75436 6.83424 6.95284 6.99230 7.04043 7.23631 7.25808 7.28122 7.42266 7.60396 7.90000 8.07935 8.28090 8.31636 8.93827 9.62321 10.65188 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004654 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.503060 B = 6015.061776 C = 8107.698384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.075 3.925 4 C 0.567 3.433 5 O -0.544 6.544 6 C -0.092 4.092 7 C -0.153 4.153 8 C -0.080 4.080 9 C -0.143 4.143 10 C 0.233 3.767 11 N -0.677 5.677 12 C 0.057 3.943 13 C -0.078 4.078 14 C -0.209 4.209 15 C -0.072 4.072 16 C -0.231 4.231 17 C 0.147 3.853 18 O -0.157 6.157 19 C -0.395 4.395 20 H 0.091 0.909 21 C 0.044 3.956 22 N -0.849 5.849 23 Si 0.937 3.063 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.139 4.139 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.400 0.600 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.269 0.731 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 -1.048 -7.163 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C -0.068 4.068 4 C 0.357 3.643 5 O -0.422 6.422 6 C -0.095 4.095 7 C -0.174 4.174 8 C -0.099 4.099 9 C -0.165 4.165 10 C 0.131 3.869 11 N -0.301 5.301 12 C -0.037 4.037 13 C -0.098 4.098 14 C -0.229 4.229 15 C -0.091 4.091 16 C -0.251 4.251 17 C 0.090 3.910 18 O -0.058 6.058 19 C -0.471 4.471 20 H 0.108 0.892 21 C -0.162 4.162 22 N -0.483 5.483 23 Si 0.762 3.238 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.162 4.162 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.236 0.764 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.079 0.921 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.057 -1.333 -7.157 7.896 hybrid contribution 0.382 0.721 0.888 1.206 sum -2.676 -0.612 -6.269 6.843 Atomic orbital electron populations 1.21663 0.79421 1.04031 1.01057 1.47607 1.06881 1.06656 1.73965 1.22047 0.98351 0.84487 1.01895 1.18582 0.87658 0.83065 0.74988 1.90724 1.70084 1.31194 1.50221 1.19248 0.91387 0.98986 0.99890 1.20914 0.93998 1.00487 1.01999 1.20699 0.93827 0.97592 0.97781 1.20779 0.99986 0.97996 0.97758 1.17594 0.90478 0.90157 0.88703 1.41481 1.04553 1.38372 1.45733 1.16612 0.82980 0.96393 1.07697 1.20857 0.93139 0.97875 0.97928 1.20474 0.94232 1.00302 1.07862 1.20812 0.98529 0.93430 0.96304 1.21113 0.92945 1.02009 1.09079 1.19693 0.89874 0.89835 0.91596 1.84054 1.33502 1.29565 1.58720 1.21366 0.96276 0.99715 1.29735 0.89176 1.25238 0.95572 0.97615 0.97726 1.70070 1.06010 1.29808 1.42418 0.85713 0.79102 0.79972 0.79058 1.19124 1.20116 1.20184 1.20343 0.92121 1.01842 1.01925 0.89641 0.92245 0.92447 0.92518 0.91250 0.89305 0.86339 0.86161 0.86065 0.76448 0.86758 0.87326 0.87340 0.85314 0.92138 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.66 59.85 0.64 1.56 16 2 N -0.62 -8.80 3.27 -190.64 -0.62 -9.43 16 3 C 0.07 0.91 9.06 59.85 0.54 1.45 16 4 C 0.57 9.94 7.26 -12.33 -0.09 9.85 16 5 O -0.54 -10.87 16.34 5.32 0.09 -10.78 16 6 C -0.09 -1.64 4.97 -105.00 -0.52 -2.16 16 7 C -0.15 -2.47 7.71 -39.16 -0.30 -2.77 16 8 C -0.08 -1.36 10.02 -39.67 -0.40 -1.75 16 9 C -0.14 -2.78 8.94 -39.30 -0.35 -3.13 16 10 C 0.23 4.58 6.26 -83.81 -0.52 4.06 16 11 N -0.68 -12.87 5.21 -8.31 -0.04 -12.91 16 12 C 0.06 1.13 4.79 -83.55 -0.40 0.73 16 13 C -0.08 -1.33 9.97 -39.40 -0.39 -1.73 16 14 C -0.21 -3.39 10.04 -39.56 -0.40 -3.79 16 15 C -0.07 -1.24 10.04 -39.57 -0.40 -1.64 16 16 C -0.23 -4.73 9.13 -39.43 -0.36 -5.09 16 17 C 0.15 3.31 5.72 -38.92 -0.22 3.09 16 18 O -0.16 -4.15 9.07 -0.01 0.00 -4.15 16 19 C -0.39 -10.45 9.45 30.87 0.29 -10.16 16 20 H 0.09 2.23 5.28 -52.49 -0.28 1.96 16 21 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 22 N -0.85 -23.61 13.67 55.48 0.76 -22.86 16 23 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.14 -2.65 9.55 -38.96 -0.37 -3.02 16 28 H 0.08 1.08 6.91 -51.92 -0.36 0.72 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.58 7.01 -51.93 -0.36 0.21 16 32 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 33 H 0.09 1.30 6.16 -51.93 -0.32 0.98 16 34 H 0.12 1.57 6.07 -52.48 -0.32 1.26 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.47 6.55 -52.49 -0.34 2.13 16 37 H 0.40 6.77 8.84 -40.82 -0.36 6.41 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.65 5.71 -52.48 -0.30 2.35 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -31.53 362.95 -7.88 -39.42 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.15 Total: 13.96 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.35 Total: -13.46 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.09 Total: -45.20 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.09 Total: -14.93 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.53 -7.88 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.438 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds