Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99657 * 2 1 4 4 C 1.34773 * 120.00469 * 180.02562 * 2 1 3 5 5 O 1.21555 * 120.00019 * 3.97780 * 4 2 1 6 6 C 1.47857 * 120.00230 * 183.97683 * 4 2 1 7 7 C 1.39624 * 120.10903 * 313.59124 * 6 4 2 8 8 C 1.37989 * 120.01130 * 179.97438 * 7 6 4 9 9 C 1.38236 * 120.23145 * 359.70285 * 8 7 6 10 10 C 1.39011 * 120.21371 * 0.55304 * 9 8 7 11 11 N 1.39710 * 120.00547 * 179.74186 * 10 9 8 12 12 C 1.39781 * 120.00331 * 5.88481 * 11 10 9 13 13 C 1.38788 * 120.10753 * 250.12328 * 12 11 10 14 14 C 1.38180 * 119.99019 * 180.26896 * 13 12 11 15 15 C 1.38350 * 120.20766 * 359.74512 * 14 13 12 16 16 C 1.38170 * 120.21416 * 359.97269 * 15 14 13 17 17 C 1.38719 * 120.00710 * 0.02760 * 16 15 14 18 18 O 1.35787 * 120.10189 * 179.97438 * 17 16 15 19 19 C 1.34812 * 117.00243 * 354.17132 * 18 17 16 20 20 H 1.07998 * 119.99407 * 355.37201 * 19 18 17 21 21 C 1.38617 * 119.99834 * 175.37051 * 19 18 17 22 22 N 1.31570 * 120.00610 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46795 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46638 * 119.99981 * 23 21 19 26 26 H 1.48498 * 109.47062 * 240.00361 * 23 21 19 27 27 C 1.38713 * 119.98845 * 359.46923 * 10 9 8 28 28 H 1.09009 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47426 * 299.99489 * 1 2 3 30 30 H 1.09005 * 109.47309 * 60.00415 * 1 2 3 31 31 H 1.08994 * 109.47269 * 265.71802 * 3 2 1 32 32 H 1.09000 * 109.47038 * 25.71989 * 3 2 1 33 33 H 1.08995 * 109.46759 * 145.71288 * 3 2 1 34 34 H 1.08003 * 119.99280 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.88726 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.89442 * 180.27112 * 9 8 7 37 37 H 0.97000 * 120.00043 * 185.87814 * 11 10 9 38 38 H 1.07998 * 120.00147 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.88992 * 179.76050 * 14 13 12 40 40 H 1.07998 * 119.89131 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.99674 * 180.02562 * 16 15 14 42 42 H 0.96999 * 120.00723 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.11316 * 180.23244 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5335 -2.2186 -0.0740 6 6 3.6149 -1.1686 0.0883 7 6 4.3657 -0.3063 -0.7131 8 6 5.7429 -0.3090 -0.6282 9 6 6.3842 -1.1593 0.2531 10 6 5.6464 -2.0255 1.0516 11 7 6.2993 -2.8868 1.9370 12 6 7.6831 -2.7932 2.1104 13 6 8.5144 -3.7953 1.6298 14 6 9.8816 -3.7030 1.8075 15 6 10.4267 -2.6112 2.4593 16 6 9.6076 -1.6058 2.9361 17 6 8.2338 -1.6893 2.7625 18 8 7.4270 -0.7026 3.2308 19 6 8.0096 0.2700 3.9601 20 1 9.0578 0.2022 4.2112 21 6 7.2633 1.3572 4.3875 22 7 5.9863 1.4396 4.0820 23 14 8.0709 2.7053 5.3975 24 1 9.5048 2.3782 5.6030 25 1 7.9571 3.9989 4.6771 26 1 7.3931 2.8107 6.7145 27 6 4.2615 -2.0306 0.9733 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.4455 1.5451 -1.0247 32 1 1.5772 2.0463 0.4460 33 1 3.1144 1.1589 0.5789 34 1 3.8683 0.3630 -1.3995 35 1 6.3217 0.3585 -1.2493 36 1 7.4622 -1.1538 0.3183 37 1 5.7923 -3.5496 2.4314 38 1 8.0923 -4.6489 1.1204 39 1 10.5266 -4.4856 1.4363 40 1 11.4960 -2.5441 2.5950 41 1 10.0369 -0.7548 3.4440 42 1 5.4639 2.2001 4.3814 43 1 3.6861 -2.7001 1.5955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -7.966800 kcal Electronic energy + Delta-G solvation = -27384.923735 eV Core-core repulsion = 23588.629454 eV Total energy + Delta-G solvation = -3796.294281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49604 -40.93907 -39.46002 -38.12957 -36.68906 -36.07006 -34.21626 -32.17921 -31.70290 -30.60146 -29.17630 -28.47524 -27.34220 -27.24377 -24.30366 -23.43831 -23.23565 -22.43404 -20.59262 -19.77774 -18.96767 -18.65600 -17.69984 -17.57558 -17.09986 -16.72815 -16.46158 -16.34951 -16.27412 -15.53092 -15.33400 -15.14663 -14.78804 -14.59377 -14.51153 -14.40995 -14.20805 -13.80957 -13.52675 -13.42951 -13.38724 -13.04020 -12.97027 -12.69028 -12.51122 -12.43882 -12.41294 -12.23256 -12.12439 -11.40850 -11.15976 -10.98643 -10.76779 -9.91450 -9.71305 -9.68167 -9.01243 -8.41084 -8.28616 -6.06531 0.09961 0.42500 0.71463 0.76409 1.36285 1.43039 1.52032 1.61454 2.01507 2.18102 2.56678 2.85353 2.96486 3.19837 3.47129 3.50568 3.97579 4.14778 4.20832 4.23154 4.29451 4.33940 4.43312 4.48258 4.51373 4.61250 4.66790 4.71235 4.75814 4.87989 4.94507 4.94949 5.03088 5.12555 5.17075 5.32261 5.38606 5.47590 5.55992 5.59803 5.65552 5.77386 5.87360 6.03231 6.15000 6.20031 6.57893 6.85804 6.99998 7.03853 7.84702 8.80103 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004654 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.503060 B = 6015.061776 C = 8107.698384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.071 3.929 4 C 0.561 3.439 5 O -0.579 6.579 6 C -0.099 4.099 7 C -0.141 4.141 8 C -0.081 4.081 9 C -0.163 4.163 10 C 0.218 3.782 11 N -0.681 5.681 12 C 0.054 3.946 13 C -0.078 4.078 14 C -0.183 4.183 15 C -0.070 4.070 16 C -0.245 4.245 17 C 0.113 3.887 18 O -0.202 6.202 19 C -0.413 4.413 20 H 0.096 0.904 21 C -0.012 4.012 22 N -0.903 5.903 23 Si 1.007 2.993 24 H -0.255 1.255 25 H -0.269 1.269 26 H -0.274 1.274 27 C -0.159 4.159 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.405 0.595 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.269 0.731 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -0.838 -8.551 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C -0.071 4.071 4 C 0.350 3.650 5 O -0.460 6.460 6 C -0.103 4.103 7 C -0.161 4.161 8 C -0.099 4.099 9 C -0.186 4.186 10 C 0.116 3.884 11 N -0.306 5.306 12 C -0.040 4.040 13 C -0.098 4.098 14 C -0.202 4.202 15 C -0.088 4.088 16 C -0.264 4.264 17 C 0.060 3.940 18 O -0.107 6.107 19 C -0.490 4.490 20 H 0.113 0.887 21 C -0.212 4.212 22 N -0.540 5.540 23 Si 0.828 3.172 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.078 0.922 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.764 -1.135 -8.564 8.817 hybrid contribution 0.085 0.436 1.173 1.254 sum -1.679 -0.699 -7.391 7.612 Atomic orbital electron populations 1.21884 0.77502 1.03716 1.03431 1.47754 1.08211 1.06312 1.72132 1.22193 0.97553 0.83970 1.03348 1.18581 0.87486 0.83677 0.75252 1.90697 1.70521 1.32548 1.52275 1.19497 0.92182 0.98895 0.99729 1.21234 0.93606 0.99837 1.01405 1.21064 0.94546 0.97075 0.97236 1.20840 0.99356 0.99275 0.99130 1.17741 0.90800 0.90689 0.89194 1.41514 1.04596 1.38558 1.45954 1.16965 0.83653 0.96263 1.07146 1.21239 0.93567 0.97735 0.97256 1.21033 0.94188 1.00214 1.04800 1.21212 1.00062 0.92420 0.95141 1.21261 0.92634 1.02971 1.09580 1.20240 0.90895 0.90112 0.92801 1.84029 1.34816 1.30955 1.60941 1.21753 0.96664 1.00230 1.30327 0.88700 1.26327 0.96113 0.99811 0.98903 1.70211 1.07702 1.30983 1.45077 0.84680 0.78535 0.76771 0.77213 1.17844 1.19385 1.19925 1.20433 0.92083 1.02770 1.02907 0.91328 0.90478 0.89358 0.89781 0.88696 0.92136 0.82971 0.83319 0.87641 0.75864 0.84046 0.83004 0.83708 0.86340 0.92206 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.66 127.77 1.36 2.96 16 2 N -0.61 -16.73 3.27 -875.33 -2.87 -19.59 16 3 C 0.07 1.58 9.06 127.77 1.16 2.74 16 4 C 0.56 19.80 7.26 86.79 0.63 20.43 16 5 O -0.58 -23.73 16.34 -3.89 -0.06 -23.79 16 6 C -0.10 -3.63 4.97 -20.11 -0.10 -3.73 16 7 C -0.14 -4.43 7.71 22.55 0.17 -4.25 16 8 C -0.08 -2.72 10.02 22.21 0.22 -2.50 16 9 C -0.16 -6.58 8.94 22.45 0.20 -6.38 16 10 C 0.22 8.98 6.26 38.18 0.24 9.22 16 11 N -0.68 -27.02 5.21 -180.21 -0.94 -27.96 16 12 C 0.05 2.15 4.79 38.32 0.18 2.33 16 13 C -0.08 -2.51 9.97 22.39 0.22 -2.29 16 14 C -0.18 -5.23 10.04 22.28 0.22 -5.00 16 15 C -0.07 -2.22 10.04 22.28 0.22 -2.00 16 16 C -0.24 -10.03 9.13 22.37 0.20 -9.82 16 17 C 0.11 5.26 5.72 22.70 0.13 5.39 16 18 O -0.20 -11.35 9.07 -22.97 -0.21 -11.56 16 19 C -0.41 -22.97 9.45 67.91 0.64 -22.33 16 20 H 0.10 4.91 5.28 -2.91 -0.02 4.90 16 21 C -0.01 -0.67 5.49 84.82 0.47 -0.21 16 22 N -0.90 -52.80 13.67 21.61 0.30 -52.51 16 23 Si 1.01 41.63 29.55 68.60 2.03 43.66 16 24 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 C -0.16 -6.37 9.55 22.67 0.22 -6.15 16 28 H 0.07 1.70 6.91 -2.38 -0.02 1.69 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.08 1.43 7.01 -2.39 -0.02 1.41 16 32 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 33 H 0.06 1.74 6.16 -2.39 -0.01 1.72 16 34 H 0.15 3.66 6.07 -2.91 -0.02 3.64 16 35 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.11 4.50 6.55 -2.91 -0.02 4.48 16 37 H 0.40 14.50 8.84 -92.71 -0.82 13.69 16 38 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.12 5.01 5.71 -2.91 -0.02 4.99 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -74.12 362.95 4.88 -69.24 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: 0.24 Total: 44.10 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 6.40 Total: -21.58 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.51 Total: -100.06 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.27 Total: -35.35 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.12 4.88 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.273 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds