Wall clock time and date at job start Tue Mar 31 2020 14:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00333 * 2 1 4 4 C 1.34778 * 119.99891 * 180.02562 * 2 1 3 5 5 O 1.21600 * 119.99984 * 355.44555 * 4 2 1 6 6 C 1.47439 * 120.00059 * 175.44891 * 4 2 1 7 7 C 1.39729 * 120.20801 * 58.72367 * 6 4 2 8 8 C 1.37750 * 119.92450 * 180.29893 * 7 6 4 9 9 C 1.38624 * 120.35940 * 359.70240 * 8 7 6 10 10 C 1.37950 * 120.42340 * 359.97438 * 9 8 7 11 11 C 1.38975 * 120.06242 * 0.04179 * 10 9 8 12 12 N 1.38891 * 120.17939 * 179.97438 * 11 10 9 13 13 C 1.39812 * 119.99855 * 257.50411 * 12 11 10 14 14 C 1.38772 * 120.10524 * 357.21332 * 13 12 11 15 15 C 1.38176 * 119.99042 * 180.02562 * 14 13 12 16 16 C 1.38361 * 120.20694 * 359.97438 * 15 14 13 17 17 C 1.38169 * 120.21462 * 359.97438 * 16 15 14 18 18 C 1.38729 * 120.00086 * 0.28040 * 17 16 15 19 19 O 1.35783 * 120.09855 * 179.74233 * 18 17 16 20 20 C 1.34798 * 117.00188 * 5.93434 * 19 18 17 21 21 H 1.08004 * 120.00373 * 4.86702 * 20 19 18 22 22 C 1.38633 * 119.99978 * 184.86204 * 20 19 18 23 23 N 1.31577 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47256 * 89.99625 * 24 22 20 26 26 H 1.48499 * 109.47045 * 210.00177 * 24 22 20 27 27 H 1.48496 * 109.46856 * 329.99541 * 24 22 20 28 28 H 1.09001 * 109.46979 * 269.99761 * 1 2 3 29 29 H 1.08995 * 109.47282 * 29.99780 * 1 2 3 30 30 H 1.09002 * 109.47217 * 149.99921 * 1 2 3 31 31 H 1.09009 * 109.46841 * 274.40774 * 3 2 1 32 32 H 1.08999 * 109.47003 * 34.39821 * 3 2 1 33 33 H 1.08993 * 109.47553 * 154.40983 * 3 2 1 34 34 H 1.07998 * 120.03378 * 359.97438 * 7 6 4 35 35 H 1.08003 * 119.82111 * 179.72903 * 8 7 6 36 36 H 1.07992 * 119.78705 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.96913 * 180.02562 * 10 9 8 38 38 H 0.96990 * 120.00138 * 77.50052 * 12 11 10 39 39 H 1.07995 * 120.00515 * 0.04845 * 14 13 12 40 40 H 1.07997 * 119.90165 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.89199 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.00121 * 180.02562 * 17 16 15 43 43 H 0.96999 * 120.00129 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5337 -2.2187 0.0826 6 6 3.6097 -1.1692 -0.1018 7 6 4.3812 -0.5033 0.8541 8 6 5.7548 -0.5037 0.7503 9 6 6.3783 -1.1671 -0.2951 10 6 5.6311 -1.8349 -1.2432 11 6 4.2442 -1.8455 -1.1557 12 7 3.4896 -2.5166 -2.1093 13 6 2.8413 -1.7994 -3.1193 14 6 2.9026 -0.4131 -3.1377 15 6 2.2607 0.2934 -4.1367 16 6 1.5561 -0.3770 -5.1208 17 6 1.4903 -1.7571 -5.1113 18 6 2.1272 -2.4749 -4.1095 19 8 2.0595 -3.8310 -4.0952 20 6 1.4633 -4.4251 -5.1481 21 1 1.1365 -3.8318 -5.9893 22 6 1.2698 -5.7979 -5.1514 23 7 1.6685 -6.5209 -4.1269 24 14 0.4443 -6.6213 -6.6109 25 1 1.4746 -7.0140 -7.6056 26 1 -0.2850 -7.8299 -6.1500 27 1 -0.5129 -5.6744 -7.2371 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 2.3108 1.6228 -1.0247 32 1 1.6449 2.0073 0.5806 33 1 3.1818 1.1199 0.4438 34 1 3.9008 0.0156 1.6704 35 1 6.3493 0.0153 1.4877 36 1 7.4557 -1.1612 -0.3677 37 1 6.1245 -2.3497 -2.0543 38 1 3.4123 -3.4828 -2.0746 39 1 3.4523 0.1134 -2.3716 40 1 2.3090 1.3722 -4.1494 41 1 1.0565 0.1803 -5.8995 42 1 0.9397 -2.2768 -5.8814 43 1 1.5328 -7.4814 -4.1291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:35 Heat of formation + Delta-G solvation = 17.484389 kcal Electronic energy + Delta-G solvation = -28139.556155 eV Core-core repulsion = 24344.365520 eV Total energy + Delta-G solvation = -3795.190634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50699 -39.03116 -38.21932 -36.40292 -35.45048 -34.68941 -32.18987 -31.45545 -30.14384 -29.05767 -27.95748 -27.38813 -26.08753 -25.27043 -23.05169 -22.69613 -21.31150 -20.91269 -19.46126 -17.87605 -17.48328 -17.20361 -16.85373 -16.12850 -15.80864 -15.55032 -15.01160 -14.76027 -14.50967 -14.25942 -13.88166 -13.63189 -13.57996 -13.39386 -13.25169 -12.93710 -12.57515 -12.44457 -12.40699 -12.29153 -12.01355 -11.81382 -11.61890 -11.56648 -11.26836 -10.92594 -10.81959 -10.61665 -10.37154 -9.86887 -9.56659 -9.38468 -8.92136 -8.75228 -8.66165 -8.51347 -7.59286 -6.51022 -6.36037 -3.91777 1.05666 1.30392 2.31959 2.47056 2.87168 3.15331 3.17522 3.18408 3.23021 3.71824 3.95377 4.05737 4.57401 4.67522 4.83980 4.97681 5.06218 5.17795 5.23319 5.26494 5.30790 5.41554 5.45161 5.54872 5.62448 5.67327 5.72751 5.86589 5.90491 5.97629 6.07849 6.21324 6.29623 6.38983 6.46914 6.56519 6.59580 6.78402 6.84308 6.95874 7.22404 7.34932 7.44889 7.49068 7.74687 8.04172 8.18603 8.37335 8.39931 9.09885 9.80205 10.82252 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004244 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.416713 B = 6596.032110 C = 7047.026920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.615 5.615 3 C 0.068 3.932 4 C 0.567 3.433 5 O -0.514 6.514 6 C -0.136 4.136 7 C -0.090 4.090 8 C -0.134 4.134 9 C -0.094 4.094 10 C -0.128 4.128 11 C 0.219 3.781 12 N -0.701 5.701 13 C 0.149 3.851 14 C -0.152 4.152 15 C -0.169 4.169 16 C -0.118 4.118 17 C -0.206 4.206 18 C 0.108 3.892 19 O -0.183 6.183 20 C -0.384 4.384 21 H 0.089 0.911 22 C 0.038 3.962 23 N -0.864 5.864 24 Si 0.939 3.061 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.269 1.269 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.421 0.579 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 16.095 8.478 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.350 5.350 3 C -0.075 4.075 4 C 0.354 3.646 5 O -0.388 6.388 6 C -0.141 4.141 7 C -0.109 4.109 8 C -0.152 4.152 9 C -0.113 4.113 10 C -0.148 4.148 11 C 0.123 3.877 12 N -0.333 5.333 13 C 0.052 3.948 14 C -0.175 4.175 15 C -0.189 4.189 16 C -0.138 4.138 17 C -0.226 4.226 18 C 0.054 3.946 19 O -0.087 6.087 20 C -0.461 4.461 21 H 0.106 0.894 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.764 3.236 25 H -0.200 1.200 26 H -0.204 1.204 27 H -0.193 1.193 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.261 0.739 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.336 15.193 8.796 18.349 hybrid contribution -0.535 -0.599 -0.788 1.125 sum 4.802 14.594 8.009 17.326 Atomic orbital electron populations 1.21582 0.78986 1.03420 1.01249 1.47519 1.06904 1.06001 1.74572 1.22050 0.97808 0.85272 1.02382 1.18104 0.86953 0.83466 0.76041 1.90849 1.69374 1.30913 1.47675 1.20443 0.93379 1.02902 0.97393 1.21058 0.93950 0.98052 0.97888 1.20997 0.94077 1.01093 0.99053 1.21159 0.99939 0.96286 0.93933 1.21605 0.93056 1.00314 0.99860 1.17347 0.89763 0.92521 0.88050 1.41451 1.54893 1.09114 1.27828 1.17000 0.97656 0.90431 0.89754 1.20136 1.05401 0.90873 1.01123 1.20294 1.03365 0.97964 0.97229 1.20571 1.00699 0.93728 0.98772 1.20923 1.05991 0.94006 1.01690 1.18883 0.96310 0.85480 0.93973 1.83893 1.69359 1.12424 1.43061 1.21226 1.38681 0.90733 0.95428 0.89353 1.25225 0.97454 0.95394 0.98503 1.70038 1.44030 1.06586 1.29324 0.85749 0.79073 0.78954 0.79852 1.20037 1.20384 1.19319 0.93112 0.91317 0.90400 0.92336 0.91395 0.90089 0.85494 0.85592 0.85572 0.84971 0.73868 0.87540 0.87903 0.87818 0.85526 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 10.42 59.85 0.62 1.80 16 2 N -0.62 -8.72 3.27 -190.80 -0.62 -9.35 16 3 C 0.07 0.68 10.25 59.85 0.61 1.29 16 4 C 0.57 10.11 5.99 -12.51 -0.07 10.03 16 5 O -0.51 -11.63 16.51 5.28 0.09 -11.54 16 6 C -0.14 -2.12 4.20 -104.79 -0.44 -2.56 16 7 C -0.09 -1.05 7.58 -39.20 -0.30 -1.35 16 8 C -0.13 -1.33 10.02 -39.62 -0.40 -1.72 16 9 C -0.09 -1.02 10.03 -39.54 -0.40 -1.42 16 10 C -0.13 -1.80 9.96 -39.41 -0.39 -2.20 16 11 C 0.22 3.73 4.70 -83.59 -0.39 3.33 16 12 N -0.70 -14.55 4.70 -8.11 -0.04 -14.59 16 13 C 0.15 3.27 6.26 -83.54 -0.52 2.74 16 14 C -0.15 -2.87 8.82 -39.41 -0.35 -3.21 16 15 C -0.17 -3.01 10.04 -39.56 -0.40 -3.41 16 16 C -0.12 -2.25 10.04 -39.56 -0.40 -2.65 16 17 C -0.21 -4.64 9.13 -39.43 -0.36 -5.00 16 18 C 0.11 2.68 6.67 -38.92 -0.26 2.42 16 19 O -0.18 -5.25 9.01 0.04 0.00 -5.25 16 20 C -0.38 -10.93 9.44 30.88 0.29 -10.64 16 21 H 0.09 2.35 5.29 -52.48 -0.28 2.07 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 24 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 31 H 0.06 0.60 7.85 -51.92 -0.41 0.20 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.08 0.73 4.15 -51.93 -0.22 0.52 16 34 H 0.13 1.18 7.23 -52.49 -0.38 0.80 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.42 9.75 8.19 -40.82 -0.33 9.41 16 39 H 0.11 1.81 6.21 -52.49 -0.33 1.48 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.13 2.86 5.71 -52.49 -0.30 2.56 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -34.53 362.11 -7.77 -42.30 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.14 Total: 13.50 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.24 Total: -11.56 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.10 Total: -48.99 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.53 -7.77 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.781 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds