Wall clock time and date at job start Tue Mar 31 2020 14:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00333 * 2 1 4 4 C 1.34778 * 119.99891 * 180.02562 * 2 1 3 5 5 O 1.21600 * 119.99984 * 355.44555 * 4 2 1 6 6 C 1.47439 * 120.00059 * 175.44891 * 4 2 1 7 7 C 1.39729 * 120.20801 * 58.72367 * 6 4 2 8 8 C 1.37750 * 119.92450 * 180.29893 * 7 6 4 9 9 C 1.38624 * 120.35940 * 359.70240 * 8 7 6 10 10 C 1.37950 * 120.42340 * 359.97438 * 9 8 7 11 11 C 1.38975 * 120.06242 * 0.04179 * 10 9 8 12 12 N 1.38891 * 120.17939 * 179.97438 * 11 10 9 13 13 C 1.39812 * 119.99855 * 257.50411 * 12 11 10 14 14 C 1.38772 * 120.10524 * 357.21332 * 13 12 11 15 15 C 1.38176 * 119.99042 * 180.02562 * 14 13 12 16 16 C 1.38361 * 120.20694 * 359.97438 * 15 14 13 17 17 C 1.38169 * 120.21462 * 359.97438 * 16 15 14 18 18 C 1.38729 * 120.00086 * 0.28040 * 17 16 15 19 19 O 1.35783 * 120.09855 * 179.74233 * 18 17 16 20 20 C 1.34798 * 117.00188 * 5.93434 * 19 18 17 21 21 H 1.08004 * 120.00373 * 4.86702 * 20 19 18 22 22 C 1.38633 * 119.99978 * 184.86204 * 20 19 18 23 23 N 1.31577 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47256 * 89.99625 * 24 22 20 26 26 H 1.48499 * 109.47045 * 210.00177 * 24 22 20 27 27 H 1.48496 * 109.46856 * 329.99541 * 24 22 20 28 28 H 1.09001 * 109.46979 * 269.99761 * 1 2 3 29 29 H 1.08995 * 109.47282 * 29.99780 * 1 2 3 30 30 H 1.09002 * 109.47217 * 149.99921 * 1 2 3 31 31 H 1.09009 * 109.46841 * 274.40774 * 3 2 1 32 32 H 1.08999 * 109.47003 * 34.39821 * 3 2 1 33 33 H 1.08993 * 109.47553 * 154.40983 * 3 2 1 34 34 H 1.07998 * 120.03378 * 359.97438 * 7 6 4 35 35 H 1.08003 * 119.82111 * 179.72903 * 8 7 6 36 36 H 1.07992 * 119.78705 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.96913 * 180.02562 * 10 9 8 38 38 H 0.96990 * 120.00138 * 77.50052 * 12 11 10 39 39 H 1.07995 * 120.00515 * 0.04845 * 14 13 12 40 40 H 1.07997 * 119.90165 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.89199 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.00121 * 180.02562 * 17 16 15 43 43 H 0.96999 * 120.00129 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5337 -2.2187 0.0826 6 6 3.6097 -1.1692 -0.1018 7 6 4.3812 -0.5033 0.8541 8 6 5.7548 -0.5037 0.7503 9 6 6.3783 -1.1671 -0.2951 10 6 5.6311 -1.8349 -1.2432 11 6 4.2442 -1.8455 -1.1557 12 7 3.4896 -2.5166 -2.1093 13 6 2.8413 -1.7994 -3.1193 14 6 2.9026 -0.4131 -3.1377 15 6 2.2607 0.2934 -4.1367 16 6 1.5561 -0.3770 -5.1208 17 6 1.4903 -1.7571 -5.1113 18 6 2.1272 -2.4749 -4.1095 19 8 2.0595 -3.8310 -4.0952 20 6 1.4633 -4.4251 -5.1481 21 1 1.1365 -3.8318 -5.9893 22 6 1.2698 -5.7979 -5.1514 23 7 1.6685 -6.5209 -4.1269 24 14 0.4443 -6.6213 -6.6109 25 1 1.4746 -7.0140 -7.6056 26 1 -0.2850 -7.8299 -6.1500 27 1 -0.5129 -5.6744 -7.2371 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 2.3108 1.6228 -1.0247 32 1 1.6449 2.0073 0.5806 33 1 3.1818 1.1199 0.4438 34 1 3.9008 0.0156 1.6704 35 1 6.3493 0.0153 1.4877 36 1 7.4557 -1.1612 -0.3677 37 1 6.1245 -2.3497 -2.0543 38 1 3.4123 -3.4828 -2.0746 39 1 3.4523 0.1134 -2.3716 40 1 2.3090 1.3722 -4.1494 41 1 1.0565 0.1803 -5.8995 42 1 0.9397 -2.2768 -5.8814 43 1 1.5328 -7.4814 -4.1291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:34 Heat of formation + Delta-G solvation = -5.860667 kcal Electronic energy + Delta-G solvation = -28140.568472 eV Core-core repulsion = 24344.365520 eV Total energy + Delta-G solvation = -3796.202952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75401 -40.67666 -39.44942 -38.12548 -36.71168 -36.06086 -34.24663 -32.48620 -31.44295 -30.72171 -29.08800 -28.64991 -27.31630 -27.17680 -24.11523 -23.99110 -22.95145 -22.33276 -20.61860 -19.77715 -19.15750 -18.44001 -18.06939 -17.38926 -17.31240 -16.90901 -16.31688 -16.11049 -15.85870 -15.64648 -15.44286 -15.35188 -14.92862 -14.88976 -14.49281 -14.18130 -14.12476 -13.54460 -13.47015 -13.42694 -13.41754 -13.30157 -12.93317 -12.79471 -12.65925 -12.47182 -12.31307 -12.22469 -12.09407 -11.33952 -11.27143 -10.93086 -10.77825 -9.96687 -9.75459 -9.60928 -9.28452 -8.44055 -8.17335 -6.07504 0.01017 0.29733 0.66830 0.84082 1.31475 1.41598 1.49196 1.60772 2.08672 2.16491 2.52157 2.71569 2.88392 3.22784 3.48810 3.53628 3.92071 4.12817 4.15073 4.29738 4.31488 4.33852 4.42202 4.43908 4.46895 4.49894 4.62205 4.65144 4.75061 4.85146 4.92183 4.94252 5.02985 5.09251 5.15197 5.31161 5.42854 5.44831 5.48246 5.52643 5.65651 5.83438 5.86536 6.00589 6.16994 6.31277 6.56873 6.78610 7.01015 7.12681 7.85316 8.79482 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004244 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.416713 B = 6596.032110 C = 7047.026920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.610 5.610 3 C 0.060 3.940 4 C 0.557 3.443 5 O -0.585 6.585 6 C -0.153 4.153 7 C -0.082 4.082 8 C -0.111 4.111 9 C -0.080 4.080 10 C -0.141 4.141 11 C 0.176 3.824 12 N -0.709 5.709 13 C 0.144 3.856 14 C -0.148 4.148 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.212 4.212 18 C 0.052 3.948 19 O -0.232 6.232 20 C -0.404 4.404 21 H 0.096 0.904 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.017 2.983 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.254 1.254 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.123 0.877 38 H 0.398 0.602 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 21.087 9.340 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.343 5.343 3 C -0.081 4.081 4 C 0.346 3.654 5 O -0.465 6.465 6 C -0.158 4.158 7 C -0.101 4.101 8 C -0.129 4.129 9 C -0.099 4.099 10 C -0.161 4.161 11 C 0.082 3.918 12 N -0.337 5.337 13 C 0.045 3.955 14 C -0.171 4.171 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.232 4.232 18 C 0.000 4.000 19 O -0.140 6.140 20 C -0.480 4.480 21 H 0.113 0.887 22 C -0.223 4.223 23 N -0.562 5.562 24 Si 0.836 3.164 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.178 1.178 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.180 0.820 37 H 0.141 0.859 38 H 0.234 0.766 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.951 20.333 9.673 23.565 hybrid contribution -0.890 -1.765 -0.880 2.164 sum 6.061 18.568 8.793 21.420 Atomic orbital electron populations 1.21667 0.78829 1.02753 1.02281 1.47707 1.07385 1.06597 1.72570 1.22372 0.98622 0.83659 1.03412 1.18637 0.88100 0.83475 0.75190 1.90812 1.70891 1.33588 1.51219 1.20379 0.92342 1.04518 0.98544 1.21415 0.94701 0.96924 0.97032 1.21532 0.93462 0.99151 0.98737 1.21581 1.01527 0.94204 0.92557 1.21640 0.91962 1.01381 1.01112 1.17703 0.90680 0.94670 0.88715 1.41520 1.55373 1.08166 1.28648 1.17427 0.96921 0.91788 0.89350 1.20468 1.05242 0.89429 1.01972 1.20903 0.99797 1.00314 0.94875 1.20948 1.01091 0.92144 1.00281 1.21099 1.05504 0.95875 1.00758 1.19509 0.99148 0.84750 0.96573 1.83859 1.71656 1.14612 1.43884 1.21707 1.38679 0.91560 0.96098 0.88675 1.26520 0.98117 0.95743 1.01905 1.70209 1.46892 1.06826 1.32245 0.84613 0.78221 0.77726 0.75796 1.18711 1.19849 1.17818 0.91319 0.88011 0.94843 0.92051 0.87938 0.88802 0.82584 0.80803 0.81951 0.85926 0.76634 0.85103 0.82931 0.84152 0.86713 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.23 10.42 127.77 1.33 3.57 16 2 N -0.61 -16.48 3.27 -875.83 -2.87 -19.35 16 3 C 0.06 0.95 10.25 127.77 1.31 2.26 16 4 C 0.56 20.29 5.99 86.67 0.52 20.80 16 5 O -0.59 -28.69 16.51 -4.03 -0.07 -28.76 16 6 C -0.15 -4.67 4.20 -19.97 -0.08 -4.76 16 7 C -0.08 -1.59 7.58 22.51 0.17 -1.42 16 8 C -0.11 -1.59 10.02 22.25 0.22 -1.37 16 9 C -0.08 -1.42 10.03 22.29 0.22 -1.20 16 10 C -0.14 -3.89 9.96 22.38 0.22 -3.67 16 11 C 0.18 6.16 4.70 38.72 0.18 6.35 16 12 N -0.71 -31.96 4.70 -179.57 -0.84 -32.81 16 13 C 0.14 6.64 6.26 38.31 0.24 6.88 16 14 C -0.15 -5.41 8.82 22.38 0.20 -5.22 16 15 C -0.14 -4.53 10.04 22.28 0.22 -4.31 16 16 C -0.12 -4.55 10.04 22.28 0.22 -4.33 16 17 C -0.21 -9.96 9.13 22.37 0.20 -9.75 16 18 C 0.05 2.77 6.67 22.70 0.15 2.92 16 19 O -0.23 -14.72 9.01 -22.78 -0.21 -14.92 16 20 C -0.40 -24.86 9.44 67.91 0.64 -24.22 16 21 H 0.10 5.43 5.29 -2.91 -0.02 5.41 16 22 C -0.03 -1.58 5.49 84.83 0.47 -1.11 16 23 N -0.92 -59.67 13.67 21.61 0.30 -59.38 16 24 Si 1.02 45.58 29.55 68.60 2.03 47.61 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.03 1.15 7.49 -2.39 -0.02 1.13 16 31 H 0.06 0.97 7.85 -2.38 -0.02 0.95 16 32 H 0.10 0.95 8.10 -2.39 -0.02 0.94 16 33 H 0.09 1.24 4.15 -2.39 -0.01 1.23 16 34 H 0.16 2.10 7.23 -2.91 -0.02 2.08 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.40 20.92 8.19 -92.72 -0.76 20.16 16 39 H 0.13 4.12 6.21 -2.91 -0.02 4.10 16 40 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 42 H 0.12 5.50 5.71 -2.91 -0.02 5.49 16 43 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -88.92 362.11 5.08 -83.84 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: 0.30 Total: 42.33 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 6.45 Total: -18.56 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.42 Total: -111.53 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.27 Total: -43.68 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -88.92 5.08 -83.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.976 kcal (2) G-P(sol) polarization free energy of solvation -88.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds