Wall clock time and date at job start Tue Mar 31 2020 14:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34781 * 119.99916 * 2 1 4 4 O 1.21276 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46963 * 180.02562 * 5 3 2 7 7 C 1.38322 * 119.96220 * 269.72631 * 6 5 3 8 8 C 1.38271 * 120.15514 * 180.27906 * 7 6 5 9 9 C 1.38115 * 120.07771 * 359.97438 * 8 7 6 10 10 C 1.38921 * 119.91911 * 0.02562 * 9 8 7 11 11 N 1.39673 * 120.07287 * 179.97438 * 10 9 8 12 12 C 1.39791 * 120.00143 * 355.28579 * 11 10 9 13 13 C 1.38777 * 120.10693 * 254.84408 * 12 11 10 14 14 C 1.38187 * 119.99149 * 180.02562 * 13 12 11 15 15 C 1.38360 * 120.20512 * 0.02562 * 14 13 12 16 16 C 1.38171 * 120.21275 * 0.02562 * 15 14 13 17 17 C 1.38722 * 120.00960 * 359.67145 * 16 15 14 18 18 O 1.35785 * 120.10742 * 180.32259 * 17 16 15 19 19 C 1.34809 * 116.99643 * 5.65816 * 18 17 16 20 20 H 1.07995 * 120.00111 * 354.92738 * 19 18 17 21 21 C 1.38624 * 120.00032 * 174.93282 * 19 18 17 22 22 N 1.31583 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00029 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47216 * 60.00064 * 23 21 19 25 25 H 1.48507 * 109.46870 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47108 * 299.99297 * 23 21 19 27 27 C 1.38070 * 119.96316 * 90.00571 * 6 5 3 28 28 H 1.09002 * 109.47416 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47631 * 299.99788 * 1 2 3 30 30 H 1.08997 * 109.47313 * 60.00131 * 1 2 3 31 31 H 0.97003 * 120.00563 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47272 * 60.00566 * 5 3 2 33 33 H 1.08997 * 109.47728 * 300.00188 * 5 3 2 34 34 H 1.08000 * 119.91868 * 0.27818 * 7 6 5 35 35 H 1.08001 * 119.95752 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.03783 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00025 * 175.27954 * 11 10 9 38 38 H 1.07996 * 120.00484 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.89583 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.89115 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.99501 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99839 * 180.02562 * 22 21 19 43 43 H 1.08007 * 120.03599 * 359.69596 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1481 2.5881 0.0011 7 6 4.3842 3.2377 -1.1970 8 6 4.8506 4.5394 -1.2012 9 6 5.0818 5.1957 -0.0081 10 6 4.8458 4.5462 1.1970 11 7 5.0790 5.2066 2.4055 12 6 5.6430 6.4857 2.4055 13 6 6.9705 6.6612 2.7698 14 6 7.5255 7.9267 2.7695 15 6 6.7613 9.0218 2.4072 16 6 5.4384 8.8569 2.0439 17 6 4.8741 7.5897 2.0351 18 8 3.5761 7.4247 1.6721 19 6 2.9240 8.5142 1.2193 20 1 3.4088 9.4791 1.2352 21 6 1.6310 8.3961 0.7335 22 7 1.0405 7.2204 0.7138 23 14 0.7272 9.9059 0.1067 24 1 1.4827 10.5008 -1.0249 25 1 -0.6288 9.5146 -0.3553 26 1 0.6093 10.9021 1.2016 27 6 4.3776 3.2379 1.1975 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6533 -0.8892 33 1 4.0089 0.6536 0.8907 34 1 4.2039 2.7270 -2.1314 35 1 5.0343 5.0435 -2.1385 36 1 5.4465 6.2122 -0.0121 37 1 4.8496 4.7777 3.2447 38 1 7.5696 5.8089 3.0544 39 1 8.5588 8.0614 3.0529 40 1 7.2000 10.0086 2.4091 41 1 4.8450 9.7142 1.7621 42 1 0.1359 7.1376 0.3735 43 1 4.1927 2.7302 2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:46 Heat of formation + Delta-G solvation = -0.440020 kcal Electronic energy + Delta-G solvation = -27122.584035 eV Core-core repulsion = 23326.616140 eV Total energy + Delta-G solvation = -3795.967895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.80752 -39.33335 -38.15566 -36.43567 -34.81066 -34.39928 -32.22092 -32.07826 -30.09552 -29.00425 -28.10186 -27.14901 -25.65535 -25.27586 -22.07039 -21.87744 -21.38298 -20.65880 -19.75235 -17.91612 -17.26019 -17.10368 -16.68117 -15.97173 -15.56829 -15.31104 -15.16968 -14.63445 -14.57703 -14.08424 -13.75144 -13.61789 -13.56659 -13.17729 -13.11899 -12.80554 -12.68914 -12.52873 -12.25075 -12.05462 -11.68876 -11.64841 -11.28029 -11.06534 -10.86751 -10.83895 -10.74887 -10.46292 -10.38524 -9.77502 -9.56902 -9.30605 -9.07456 -8.78373 -8.14058 -8.07026 -7.24144 -6.67047 -6.35122 -3.96028 2.04242 2.06035 2.34072 2.37637 2.86145 3.16440 3.18287 3.21305 3.34869 4.00365 4.15479 4.52628 4.57103 4.91935 5.06464 5.13587 5.22538 5.26100 5.33752 5.49121 5.54606 5.65352 5.66161 5.79091 5.79690 5.84068 5.99350 6.07603 6.22792 6.29891 6.41209 6.42788 6.60780 6.68144 6.72154 7.05494 7.07819 7.12991 7.16437 7.29625 7.35823 7.37480 7.48560 7.56879 7.74713 8.02699 8.26860 8.42138 8.47557 9.06344 9.75078 10.79290 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.004487 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.675878 B = 6239.173956 C = 8351.527334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.746 5.746 3 C 0.503 3.497 4 O -0.505 6.505 5 C -0.094 4.094 6 C -0.035 4.035 7 C -0.168 4.168 8 C -0.075 4.075 9 C -0.158 4.158 10 C 0.237 3.763 11 N -0.680 5.680 12 C 0.056 3.944 13 C -0.075 4.075 14 C -0.214 4.214 15 C -0.071 4.071 16 C -0.235 4.235 17 C 0.146 3.854 18 O -0.152 6.152 19 C -0.400 4.400 20 H 0.090 0.910 21 C 0.044 3.956 22 N -0.841 5.841 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.271 1.271 27 C -0.181 4.181 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.397 0.603 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.271 0.729 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -12.868 -0.801 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.400 5.400 3 C 0.289 3.711 4 O -0.377 6.377 5 C -0.134 4.134 6 C -0.036 4.036 7 C -0.188 4.188 8 C -0.094 4.094 9 C -0.180 4.180 10 C 0.135 3.865 11 N -0.304 5.304 12 C -0.038 4.038 13 C -0.095 4.095 14 C -0.234 4.234 15 C -0.090 4.090 16 C -0.255 4.255 17 C 0.089 3.911 18 O -0.054 6.054 19 C -0.477 4.477 20 H 0.107 0.893 21 C -0.162 4.162 22 N -0.474 5.474 23 Si 0.761 3.239 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.203 4.203 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.232 0.768 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.315 -12.222 -0.909 13.358 hybrid contribution -0.550 0.384 0.036 0.672 sum 4.765 -11.837 -0.873 12.790 Atomic orbital electron populations 1.21478 0.80013 1.01604 1.02486 1.45851 1.07531 1.08659 1.77973 1.20804 0.90246 0.83634 0.76458 1.90874 1.69976 1.30807 1.46065 1.20590 0.91752 0.96638 1.04381 1.18700 0.98262 0.93478 0.93208 1.20484 1.06166 0.95848 0.96339 1.20715 0.97485 0.94083 0.97148 1.20622 1.06380 0.99937 0.91053 1.17682 0.92270 0.90294 0.86301 1.41437 1.68607 1.15228 1.05153 1.16589 0.91456 0.82960 1.12766 1.20846 0.92580 0.96986 0.99088 1.20448 0.99501 0.92544 1.10859 1.20792 0.93564 0.97758 0.96839 1.21101 0.96348 0.97300 1.10706 1.19768 0.85665 0.92370 0.93283 1.84063 1.16415 1.35996 1.68908 1.21253 0.97185 0.86704 1.42510 0.89281 1.25280 0.96090 0.98238 0.96636 1.70081 1.13679 1.22498 1.41115 0.85863 0.78720 0.80041 0.79274 1.19507 1.20292 1.19582 1.20151 1.08799 0.94164 0.97228 0.91093 0.92308 0.92379 0.76933 0.88419 0.88504 0.87532 0.86899 0.86444 0.76784 0.86924 0.87451 0.87443 0.85406 0.91887 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.70 59.84 0.64 1.53 16 2 N -0.75 -7.84 5.71 -67.08 -0.38 -8.23 16 3 C 0.50 7.55 7.82 -10.98 -0.09 7.46 16 4 O -0.50 -10.84 16.03 5.56 0.09 -10.75 16 5 C -0.09 -1.16 5.83 -29.03 -0.17 -1.33 16 6 C -0.04 -0.61 4.37 -104.65 -0.46 -1.07 16 7 C -0.17 -3.02 9.70 -39.54 -0.38 -3.40 16 8 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 9 C -0.16 -3.46 8.95 -39.37 -0.35 -3.81 16 10 C 0.24 4.98 6.50 -83.77 -0.54 4.43 16 11 N -0.68 -13.79 5.18 -8.28 -0.04 -13.84 16 12 C 0.06 1.19 4.88 -83.54 -0.41 0.78 16 13 C -0.08 -1.36 9.97 -39.40 -0.39 -1.75 16 14 C -0.21 -3.68 10.04 -39.56 -0.40 -4.07 16 15 C -0.07 -1.30 10.04 -39.56 -0.40 -1.70 16 16 C -0.23 -5.10 9.16 -39.43 -0.36 -5.46 16 17 C 0.15 3.53 5.50 -38.92 -0.21 3.32 16 18 O -0.15 -4.35 9.21 0.00 0.00 -4.35 16 19 C -0.40 -11.35 9.49 30.88 0.29 -11.06 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 21 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 22 N -0.84 -25.76 13.67 55.48 0.76 -25.00 16 23 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.18 -3.40 9.55 -39.38 -0.38 -3.77 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 2.57 8.83 -40.82 -0.36 2.21 16 32 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.12 2.75 6.31 -52.49 -0.33 2.42 16 37 H 0.40 7.16 8.84 -40.82 -0.36 6.80 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 42 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -36.54 370.78 -8.51 -45.06 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -5.40 Total: 15.96 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -4.10 Total: -20.62 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.33 Total: -47.07 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.54 -8.51 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.618 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds