Wall clock time and date at job start Tue Mar 31 2020 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34781 * 119.99916 * 2 1 4 4 O 1.21276 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46963 * 180.02562 * 5 3 2 7 7 C 1.38322 * 119.96220 * 269.72631 * 6 5 3 8 8 C 1.38271 * 120.15514 * 180.27906 * 7 6 5 9 9 C 1.38115 * 120.07771 * 359.97438 * 8 7 6 10 10 C 1.38921 * 119.91911 * 0.02562 * 9 8 7 11 11 N 1.39673 * 120.07287 * 179.97438 * 10 9 8 12 12 C 1.39791 * 120.00143 * 355.28579 * 11 10 9 13 13 C 1.38777 * 120.10693 * 254.84408 * 12 11 10 14 14 C 1.38187 * 119.99149 * 180.02562 * 13 12 11 15 15 C 1.38360 * 120.20512 * 0.02562 * 14 13 12 16 16 C 1.38171 * 120.21275 * 0.02562 * 15 14 13 17 17 C 1.38722 * 120.00960 * 359.67145 * 16 15 14 18 18 O 1.35785 * 120.10742 * 180.32259 * 17 16 15 19 19 C 1.34809 * 116.99643 * 5.65816 * 18 17 16 20 20 H 1.07995 * 120.00111 * 354.92738 * 19 18 17 21 21 C 1.38624 * 120.00032 * 174.93282 * 19 18 17 22 22 N 1.31583 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00029 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47216 * 60.00064 * 23 21 19 25 25 H 1.48507 * 109.46870 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47108 * 299.99297 * 23 21 19 27 27 C 1.38070 * 119.96316 * 90.00571 * 6 5 3 28 28 H 1.09002 * 109.47416 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47631 * 299.99788 * 1 2 3 30 30 H 1.08997 * 109.47313 * 60.00131 * 1 2 3 31 31 H 0.97003 * 120.00563 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47272 * 60.00566 * 5 3 2 33 33 H 1.08997 * 109.47728 * 300.00188 * 5 3 2 34 34 H 1.08000 * 119.91868 * 0.27818 * 7 6 5 35 35 H 1.08001 * 119.95752 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.03783 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00025 * 175.27954 * 11 10 9 38 38 H 1.07996 * 120.00484 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.89583 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.89115 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.99501 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99839 * 180.02562 * 22 21 19 43 43 H 1.08007 * 120.03599 * 359.69596 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1481 2.5881 0.0011 7 6 4.3842 3.2377 -1.1970 8 6 4.8506 4.5394 -1.2012 9 6 5.0818 5.1957 -0.0081 10 6 4.8458 4.5462 1.1970 11 7 5.0790 5.2066 2.4055 12 6 5.6430 6.4857 2.4055 13 6 6.9705 6.6612 2.7698 14 6 7.5255 7.9267 2.7695 15 6 6.7613 9.0218 2.4072 16 6 5.4384 8.8569 2.0439 17 6 4.8741 7.5897 2.0351 18 8 3.5761 7.4247 1.6721 19 6 2.9240 8.5142 1.2193 20 1 3.4088 9.4791 1.2352 21 6 1.6310 8.3961 0.7335 22 7 1.0405 7.2204 0.7138 23 14 0.7272 9.9059 0.1067 24 1 1.4827 10.5008 -1.0249 25 1 -0.6288 9.5146 -0.3553 26 1 0.6093 10.9021 1.2016 27 6 4.3776 3.2379 1.1975 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6533 -0.8892 33 1 4.0089 0.6536 0.8907 34 1 4.2039 2.7270 -2.1314 35 1 5.0343 5.0435 -2.1385 36 1 5.4465 6.2122 -0.0121 37 1 4.8496 4.7777 3.2447 38 1 7.5696 5.8089 3.0544 39 1 8.5588 8.0614 3.0529 40 1 7.2000 10.0086 2.4091 41 1 4.8450 9.7142 1.7621 42 1 0.1359 7.1376 0.3735 43 1 4.1927 2.7302 2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:45 Heat of formation + Delta-G solvation = -26.497049 kcal Electronic energy + Delta-G solvation = -27123.713952 eV Core-core repulsion = 23326.616140 eV Total energy + Delta-G solvation = -3797.097813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27003 -40.76383 -39.65086 -38.17786 -36.27901 -35.53412 -34.25913 -33.41158 -31.63313 -30.62703 -29.33716 -28.73333 -27.28229 -26.69399 -23.62960 -23.39503 -23.01928 -21.96009 -21.08485 -19.79908 -18.93178 -18.40456 -18.01966 -17.53144 -16.84995 -16.63739 -16.42885 -16.39469 -16.30239 -15.53600 -15.38336 -15.24100 -14.75888 -14.67094 -14.60729 -14.48731 -13.97870 -13.90618 -13.63228 -13.49308 -13.07326 -12.98149 -12.79027 -12.63111 -12.51671 -12.42769 -12.21818 -12.19390 -11.84177 -11.40555 -11.07752 -10.87252 -10.79068 -10.08980 -9.69992 -9.55820 -8.97908 -8.42919 -8.22164 -6.11039 0.46055 0.57732 0.73637 0.85674 1.29526 1.41093 1.46218 1.73238 2.15281 2.36812 2.63622 2.84416 3.11117 3.17273 3.51813 3.75899 4.05607 4.17720 4.19536 4.27013 4.34027 4.40650 4.49644 4.52505 4.59987 4.61499 4.66298 4.68929 4.75230 4.88689 4.95832 5.07739 5.11699 5.16172 5.20617 5.50002 5.52580 5.59648 5.64881 5.68433 5.75379 5.79506 5.98232 6.04775 6.20978 6.64945 6.68061 6.95128 7.00560 7.40772 7.83336 8.77351 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.004487 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.675878 B = 6239.173956 C = 8351.527334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.500 3.500 4 O -0.584 6.584 5 C -0.087 4.087 6 C -0.033 4.033 7 C -0.174 4.174 8 C -0.091 4.091 9 C -0.191 4.191 10 C 0.215 3.785 11 N -0.683 5.683 12 C 0.052 3.948 13 C -0.074 4.074 14 C -0.185 4.185 15 C -0.070 4.070 16 C -0.249 4.249 17 C 0.109 3.891 18 O -0.206 6.206 19 C -0.416 4.416 20 H 0.098 0.902 21 C -0.019 4.019 22 N -0.907 5.907 23 Si 1.011 2.989 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.255 1.255 27 C -0.192 4.192 28 H 0.118 0.882 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.422 0.578 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.404 0.596 38 H 0.145 0.855 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.266 0.734 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.705 -14.491 -0.500 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.287 3.713 4 O -0.462 6.462 5 C -0.126 4.126 6 C -0.034 4.034 7 C -0.194 4.194 8 C -0.109 4.109 9 C -0.213 4.213 10 C 0.114 3.886 11 N -0.308 5.308 12 C -0.042 4.042 13 C -0.094 4.094 14 C -0.204 4.204 15 C -0.088 4.088 16 C -0.269 4.269 17 C 0.055 3.945 18 O -0.111 6.111 19 C -0.492 4.492 20 H 0.116 0.884 21 C -0.218 4.218 22 N -0.544 5.544 23 Si 0.831 3.169 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.179 1.179 27 C -0.214 4.214 28 H 0.136 0.864 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.965 -13.904 -0.581 16.034 hybrid contribution -0.991 0.766 0.048 1.254 sum 6.973 -13.139 -0.533 14.884 Atomic orbital electron populations 1.21597 0.79671 1.04062 1.00691 1.45675 1.07866 1.08583 1.75555 1.21270 0.91298 0.83536 0.75183 1.90870 1.71555 1.33692 1.50126 1.20702 0.89733 0.93989 1.08206 1.19255 0.96105 0.95885 0.92199 1.20889 1.05151 0.95214 0.98119 1.20993 0.97738 0.95280 0.96932 1.20554 1.09009 0.99082 0.92683 1.17948 0.93105 0.91433 0.86157 1.41459 1.68987 1.14994 1.05403 1.17014 0.92504 0.82707 1.11940 1.21268 0.91283 0.98907 0.97915 1.21066 1.01246 0.91329 1.06720 1.21219 0.91904 1.00251 0.95393 1.21271 0.98156 0.96147 1.11323 1.20413 0.85209 0.94480 0.94363 1.84043 1.18637 1.36340 1.72048 1.21717 0.97737 0.87390 1.42398 0.88425 1.26509 0.96843 1.01637 0.96811 1.70275 1.14012 1.25446 1.44645 0.84762 0.77058 0.75930 0.79175 1.18228 1.20112 1.17900 1.20521 1.08364 0.93557 0.98965 0.86383 0.94402 0.94065 0.74018 0.84265 0.84830 0.84625 0.85805 0.89400 0.75966 0.83709 0.82713 0.83584 0.86500 0.92467 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 10.70 127.77 1.37 2.95 16 2 N -0.72 -13.42 5.71 -484.54 -2.77 -16.19 16 3 C 0.50 14.36 7.82 87.66 0.69 15.04 16 4 O -0.58 -25.88 16.03 -3.02 -0.05 -25.93 16 5 C -0.09 -1.89 5.83 29.10 0.17 -1.73 16 6 C -0.03 -1.12 4.37 -19.88 -0.09 -1.21 16 7 C -0.17 -6.21 9.70 22.30 0.22 -6.00 16 8 C -0.09 -3.73 10.04 22.25 0.22 -3.51 16 9 C -0.19 -8.93 8.95 22.40 0.20 -8.73 16 10 C 0.22 9.48 6.50 38.23 0.25 9.73 16 11 N -0.68 -28.78 5.18 -180.11 -0.93 -29.72 16 12 C 0.05 2.26 4.88 38.32 0.19 2.45 16 13 C -0.07 -2.53 9.97 22.39 0.22 -2.30 16 14 C -0.18 -5.61 10.04 22.29 0.22 -5.39 16 15 C -0.07 -2.37 10.04 22.28 0.22 -2.14 16 16 C -0.25 -11.05 9.16 22.37 0.20 -10.85 16 17 C 0.11 5.51 5.50 22.70 0.12 5.64 16 18 O -0.21 -12.66 9.21 -22.92 -0.21 -12.87 16 19 C -0.42 -25.23 9.49 67.91 0.64 -24.59 16 20 H 0.10 5.44 5.21 -2.91 -0.02 5.43 16 21 C -0.02 -1.16 5.49 84.82 0.47 -0.70 16 22 N -0.91 -59.93 13.67 21.61 0.30 -59.63 16 23 Si 1.01 45.80 29.55 68.60 2.03 47.83 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 27 C -0.19 -7.28 9.55 22.40 0.21 -7.07 16 28 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.42 3.70 8.83 -92.71 -0.82 2.88 16 32 H 0.14 1.92 8.08 -2.38 -0.02 1.91 16 33 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 34 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 35 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.09 4.50 6.31 -2.91 -0.02 4.48 16 37 H 0.40 15.12 8.84 -92.70 -0.82 14.30 16 38 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 41 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 42 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -91.27 370.78 3.32 -87.95 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -0.58 Total: 46.96 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 5.54 Total: -38.40 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.40 Total: -105.53 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.26 Total: -38.80 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -91.27 3.32 -87.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.451 kcal (2) G-P(sol) polarization free energy of solvation -91.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds