Wall clock time and date at job start Tue Mar 31 2020 14:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99934 * 2 1 4 4 O 1.21277 * 120.00387 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.50697 * 109.47089 * 180.02562 * 5 3 2 7 7 C 1.38117 * 120.03798 * 265.27101 * 6 5 3 8 8 C 1.38272 * 120.07581 * 180.27656 * 7 6 5 9 9 C 1.38315 * 120.15638 * 359.70459 * 8 7 6 10 10 C 1.38072 * 120.07453 * 0.02562 * 9 8 7 11 11 C 1.38914 * 120.04091 * 84.99802 * 6 5 3 12 12 N 1.39679 * 120.07859 * 0.02562 * 11 6 5 13 13 C 1.39789 * 119.99987 * 163.80497 * 12 11 6 14 14 C 1.38771 * 120.10676 * 329.45053 * 13 12 11 15 15 C 1.38183 * 119.99068 * 180.02562 * 14 13 12 16 16 C 1.38358 * 120.20577 * 359.97438 * 15 14 13 17 17 C 1.38174 * 120.21403 * 359.97438 * 16 15 14 18 18 C 1.38721 * 120.00287 * 0.29810 * 17 16 15 19 19 O 1.35791 * 120.09708 * 179.70371 * 18 17 16 20 20 C 1.34798 * 117.00240 * 5.78760 * 19 18 17 21 21 H 1.07997 * 120.00234 * 354.87474 * 20 19 18 22 22 C 1.38627 * 120.00000 * 174.86842 * 20 19 18 23 23 N 1.31581 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47117 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47251 * 120.00265 * 24 22 20 27 27 H 1.48502 * 109.47071 * 240.00108 * 24 22 20 28 28 H 1.08993 * 109.47556 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47214 * 300.00121 * 1 2 3 30 30 H 1.09001 * 109.47524 * 59.99687 * 1 2 3 31 31 H 0.97004 * 119.99992 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47267 * 59.99567 * 5 3 2 33 33 H 1.09005 * 109.46747 * 299.99601 * 5 3 2 34 34 H 1.07998 * 119.96447 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92154 * 179.72073 * 8 7 6 36 36 H 1.07994 * 119.96338 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.03516 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99593 * 343.80727 * 12 11 6 39 39 H 1.07992 * 120.00753 * 0.05261 * 14 13 12 40 40 H 1.08004 * 119.89958 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.89076 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.99432 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99890 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 6 4.1483 2.5879 0.0002 7 6 4.4712 3.2077 -1.1911 8 6 4.9377 4.5094 -1.1909 9 6 5.0767 5.1974 0.0009 10 6 4.7505 4.5859 1.1950 11 6 4.2817 3.2777 1.1985 12 7 3.9512 2.6559 2.4048 13 6 4.3914 3.1996 3.6151 14 6 5.5893 3.8980 3.6696 15 6 6.0223 4.4340 4.8674 16 6 5.2648 4.2773 6.0145 17 6 4.0702 3.5844 5.9696 18 6 3.6299 3.0378 4.7731 19 8 2.4592 2.3513 4.7281 20 6 1.7136 2.3385 5.8510 21 1 2.0932 2.7884 6.7564 22 6 0.4594 1.7480 5.8436 23 7 -0.0030 1.1995 4.7406 24 14 -0.5741 1.7310 7.3996 25 1 0.1677 2.4072 8.4940 26 1 -1.8526 2.4450 7.1526 27 1 -0.8588 0.3266 7.7894 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.0089 0.6535 -0.8907 33 1 4.0096 0.6531 0.8892 34 1 4.3632 2.6737 -2.1236 35 1 5.1937 4.9901 -2.1236 36 1 5.4409 6.2141 -0.0026 37 1 4.8590 5.1238 2.1252 38 1 3.4162 1.8467 2.4026 39 1 6.1827 4.0230 2.7761 40 1 6.9547 4.9777 4.9081 41 1 5.6079 4.6987 6.9478 42 1 3.4815 3.4645 6.8671 43 1 -0.8805 0.7860 4.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:50 Heat of formation + Delta-G solvation = 0.470217 kcal Electronic energy + Delta-G solvation = -27633.921339 eV Core-core repulsion = 23837.992915 eV Total energy + Delta-G solvation = -3795.928424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.20752 -39.21421 -38.36170 -36.50758 -34.79677 -34.27690 -32.64565 -32.29935 -29.75271 -29.30219 -28.42535 -27.28235 -25.58507 -25.37215 -22.46150 -22.12927 -20.98948 -20.68013 -19.98821 -18.01735 -17.42365 -17.16538 -16.88478 -16.13470 -15.80378 -15.07887 -15.00758 -14.58207 -14.45183 -14.26843 -13.93304 -13.77317 -13.57653 -13.37417 -13.12552 -12.87131 -12.75966 -12.65023 -12.20601 -12.02835 -11.80181 -11.70335 -11.48197 -11.19113 -11.01380 -10.95324 -10.71065 -10.62677 -10.47077 -10.22793 -9.61820 -9.43987 -8.86256 -8.84824 -8.44241 -8.26908 -7.51643 -6.49550 -6.46488 -4.03209 1.68082 1.75338 2.26086 2.41458 2.97170 3.09964 3.12483 3.17227 3.48946 3.86919 3.96327 4.22140 4.57113 4.88530 5.03169 5.07066 5.16646 5.18887 5.38875 5.41127 5.48654 5.53274 5.62873 5.73920 5.75514 5.78299 5.93976 6.00125 6.12127 6.14912 6.17691 6.34809 6.55354 6.63492 6.66105 6.67492 6.81515 6.89196 6.94738 7.11440 7.20082 7.32208 7.36406 7.64232 7.70670 7.93486 8.06899 8.23232 8.54235 8.99114 9.66384 10.70831 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.005475 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.493505 B = 5112.897695 C = 7700.634166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.507 3.493 4 O -0.518 6.518 5 C -0.095 4.095 6 C -0.140 4.140 7 C -0.066 4.066 8 C -0.182 4.182 9 C -0.078 4.078 10 C -0.190 4.190 11 C 0.230 3.770 12 N -0.660 5.660 13 C 0.097 3.903 14 C -0.122 4.122 15 C -0.185 4.185 16 C -0.097 4.097 17 C -0.213 4.213 18 C 0.123 3.877 19 O -0.178 6.178 20 C -0.388 4.388 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.859 5.859 24 Si 0.939 3.061 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.277 1.277 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.398 0.602 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.411 0.589 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -1.460 -8.974 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.293 3.707 4 O -0.392 6.392 5 C -0.135 4.135 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.202 4.202 9 C -0.097 4.097 10 C -0.212 4.212 11 C 0.127 3.873 12 N -0.280 5.280 13 C 0.000 4.000 14 C -0.143 4.143 15 C -0.204 4.204 16 C -0.116 4.116 17 C -0.234 4.234 18 C 0.068 3.932 19 O -0.082 6.082 20 C -0.465 4.465 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.494 5.494 24 Si 0.764 3.236 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.248 0.752 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.275 -0.879 -9.123 11.701 hybrid contribution -0.713 -0.751 0.945 1.402 sum 6.562 -1.630 -8.178 10.611 Atomic orbital electron populations 1.21507 0.79650 1.01784 1.02579 1.45725 1.07792 1.08463 1.76942 1.20669 0.89958 0.83792 0.76320 1.90757 1.70090 1.31071 1.47248 1.20486 0.92237 0.96168 1.04640 1.18709 1.08337 0.94916 0.92482 1.20607 0.97068 0.94856 0.95982 1.20758 1.06390 0.95392 0.97616 1.20848 0.97986 0.98886 0.92006 1.21086 1.07096 0.93611 0.99389 1.17596 0.93260 0.91291 0.85137 1.41962 1.55925 1.28975 1.01128 1.16929 0.94664 1.04526 0.83832 1.20654 0.93856 1.01359 0.98431 1.20445 1.01029 1.06341 0.92619 1.20722 0.94627 0.98793 0.97447 1.21001 0.98964 1.05505 0.97895 1.19138 0.87998 0.93521 0.92533 1.83912 1.25771 1.60705 1.37817 1.21315 0.97856 1.39195 0.88105 0.89102 1.25246 0.96097 0.96331 0.98765 1.70059 1.18362 1.34606 1.26339 0.85671 0.79578 0.78297 0.80027 1.19125 1.20185 1.20232 0.91158 0.91324 0.92831 0.76938 0.88196 0.88612 0.86726 0.86858 0.86523 0.84827 0.75236 0.85832 0.87277 0.87420 0.85286 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.70 59.85 0.64 1.86 16 2 N -0.74 -10.09 5.71 -67.08 -0.38 -10.48 16 3 C 0.51 8.56 7.63 -10.98 -0.08 8.47 16 4 O -0.52 -11.36 16.03 5.56 0.09 -11.27 16 5 C -0.10 -1.32 5.21 -29.03 -0.15 -1.47 16 6 C -0.14 -2.27 4.39 -104.42 -0.46 -2.73 16 7 C -0.07 -0.96 9.68 -39.61 -0.38 -1.34 16 8 C -0.18 -2.53 10.04 -39.54 -0.40 -2.92 16 9 C -0.08 -1.16 10.04 -39.61 -0.40 -1.55 16 10 C -0.19 -3.29 7.70 -39.37 -0.30 -3.60 16 11 C 0.23 4.26 6.30 -83.76 -0.53 3.73 16 12 N -0.66 -13.51 5.14 -8.28 -0.04 -13.55 16 13 C 0.10 2.07 6.12 -83.55 -0.51 1.56 16 14 C -0.12 -2.24 7.41 -39.40 -0.29 -2.53 16 15 C -0.18 -3.18 10.04 -39.56 -0.40 -3.58 16 16 C -0.10 -1.76 10.04 -39.56 -0.40 -2.16 16 17 C -0.21 -4.61 9.16 -39.43 -0.36 -4.98 16 18 C 0.12 2.96 6.67 -38.92 -0.26 2.70 16 19 O -0.18 -4.96 9.25 0.01 0.00 -4.96 16 20 C -0.39 -10.73 9.49 30.88 0.29 -10.44 16 21 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.40 3.96 8.83 -40.82 -0.36 3.60 16 32 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.10 1.28 7.10 -51.93 -0.37 0.91 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 2.36 5.43 -52.49 -0.28 2.08 16 38 H 0.41 8.83 6.78 -40.82 -0.28 8.55 16 39 H 0.12 2.05 5.99 -52.49 -0.31 1.73 16 40 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 43 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -33.91 362.82 -8.33 -42.24 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -5.11 Total: 18.99 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -4.08 Total: -17.99 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.33 Total: -47.96 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.91 -8.33 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.710 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds