Wall clock time and date at job start Tue Mar 31 2020 14:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99934 * 2 1 4 4 O 1.21277 * 120.00387 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.50697 * 109.47089 * 180.02562 * 5 3 2 7 7 C 1.38117 * 120.03798 * 265.27101 * 6 5 3 8 8 C 1.38272 * 120.07581 * 180.27656 * 7 6 5 9 9 C 1.38315 * 120.15638 * 359.70459 * 8 7 6 10 10 C 1.38072 * 120.07453 * 0.02562 * 9 8 7 11 11 C 1.38914 * 120.04091 * 84.99802 * 6 5 3 12 12 N 1.39679 * 120.07859 * 0.02562 * 11 6 5 13 13 C 1.39789 * 119.99987 * 163.80497 * 12 11 6 14 14 C 1.38771 * 120.10676 * 329.45053 * 13 12 11 15 15 C 1.38183 * 119.99068 * 180.02562 * 14 13 12 16 16 C 1.38358 * 120.20577 * 359.97438 * 15 14 13 17 17 C 1.38174 * 120.21403 * 359.97438 * 16 15 14 18 18 C 1.38721 * 120.00287 * 0.29810 * 17 16 15 19 19 O 1.35791 * 120.09708 * 179.70371 * 18 17 16 20 20 C 1.34798 * 117.00240 * 5.78760 * 19 18 17 21 21 H 1.07997 * 120.00234 * 354.87474 * 20 19 18 22 22 C 1.38627 * 120.00000 * 174.86842 * 20 19 18 23 23 N 1.31581 * 119.99924 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47117 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47251 * 120.00265 * 24 22 20 27 27 H 1.48502 * 109.47071 * 240.00108 * 24 22 20 28 28 H 1.08993 * 109.47556 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47214 * 300.00121 * 1 2 3 30 30 H 1.09001 * 109.47524 * 59.99687 * 1 2 3 31 31 H 0.97004 * 119.99992 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47267 * 59.99567 * 5 3 2 33 33 H 1.09005 * 109.46747 * 299.99601 * 5 3 2 34 34 H 1.07998 * 119.96447 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92154 * 179.72073 * 8 7 6 36 36 H 1.07994 * 119.96338 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.03516 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99593 * 343.80727 * 12 11 6 39 39 H 1.07992 * 120.00753 * 0.05261 * 14 13 12 40 40 H 1.08004 * 119.89958 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.89076 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.99432 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99890 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 6 4.1483 2.5879 0.0002 7 6 4.4712 3.2077 -1.1911 8 6 4.9377 4.5094 -1.1909 9 6 5.0767 5.1974 0.0009 10 6 4.7505 4.5859 1.1950 11 6 4.2817 3.2777 1.1985 12 7 3.9512 2.6559 2.4048 13 6 4.3914 3.1996 3.6151 14 6 5.5893 3.8980 3.6696 15 6 6.0223 4.4340 4.8674 16 6 5.2648 4.2773 6.0145 17 6 4.0702 3.5844 5.9696 18 6 3.6299 3.0378 4.7731 19 8 2.4592 2.3513 4.7281 20 6 1.7136 2.3385 5.8510 21 1 2.0932 2.7884 6.7564 22 6 0.4594 1.7480 5.8436 23 7 -0.0030 1.1995 4.7406 24 14 -0.5741 1.7310 7.3996 25 1 0.1677 2.4072 8.4940 26 1 -1.8526 2.4450 7.1526 27 1 -0.8588 0.3266 7.7894 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.0089 0.6535 -0.8907 33 1 4.0096 0.6531 0.8892 34 1 4.3632 2.6737 -2.1236 35 1 5.1937 4.9901 -2.1236 36 1 5.4409 6.2141 -0.0026 37 1 4.8590 5.1238 2.1252 38 1 3.4162 1.8467 2.4026 39 1 6.1827 4.0230 2.7761 40 1 6.9547 4.9777 4.9081 41 1 5.6079 4.6987 6.9478 42 1 3.4815 3.4645 6.8671 43 1 -0.8805 0.7860 4.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:49 Heat of formation + Delta-G solvation = -22.495031 kcal Electronic energy + Delta-G solvation = -27634.917187 eV Core-core repulsion = 23837.992915 eV Total energy + Delta-G solvation = -3796.924272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58782 -40.72534 -39.76748 -38.17186 -36.20004 -35.58534 -34.27348 -33.86551 -31.11995 -30.87671 -29.73004 -28.67509 -27.35092 -26.73300 -23.83008 -23.64790 -22.38387 -22.10603 -21.27144 -19.84283 -19.07632 -18.47195 -18.16437 -17.64159 -17.14218 -16.50704 -16.38105 -16.18399 -16.00575 -15.68664 -15.50000 -15.22994 -14.94517 -14.83624 -14.59025 -14.31882 -14.12501 -13.92114 -13.71716 -13.45228 -13.14309 -13.11092 -12.96514 -12.65770 -12.60452 -12.35975 -12.15080 -12.05074 -11.88729 -11.68080 -11.23059 -11.02314 -10.81057 -10.11964 -9.72964 -9.60611 -9.14406 -8.45801 -8.00379 -6.10453 0.33675 0.51562 0.67572 0.99510 1.31686 1.39746 1.49113 1.66172 2.14207 2.33949 2.43707 2.82835 3.03124 3.18469 3.45969 3.71939 3.95804 4.07207 4.13571 4.25478 4.29296 4.34399 4.42672 4.46147 4.53197 4.57110 4.62290 4.63576 4.78023 4.80837 4.92003 5.04099 5.08318 5.12047 5.21197 5.38994 5.45609 5.52145 5.60438 5.65258 5.74792 5.77858 5.96704 6.06875 6.17395 6.55976 6.59714 6.68671 6.98738 7.31655 7.78953 8.76153 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.005475 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.493505 B = 5112.897695 C = 7700.634166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.724 5.724 3 C 0.500 3.500 4 O -0.579 6.579 5 C -0.089 4.089 6 C -0.149 4.149 7 C -0.071 4.071 8 C -0.174 4.174 9 C -0.080 4.080 10 C -0.209 4.209 11 C 0.195 3.805 12 N -0.672 5.672 13 C 0.092 3.908 14 C -0.120 4.120 15 C -0.158 4.158 16 C -0.099 4.099 17 C -0.221 4.221 18 C 0.074 3.926 19 O -0.226 6.226 20 C -0.409 4.409 21 H 0.098 0.902 22 C -0.021 4.021 23 N -0.913 5.913 24 Si 1.014 2.986 25 H -0.252 1.252 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.111 0.889 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.418 0.582 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.398 0.602 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.734 -0.646 -9.968 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.377 5.377 3 C 0.287 3.713 4 O -0.458 6.458 5 C -0.129 4.129 6 C -0.154 4.154 7 C -0.089 4.089 8 C -0.193 4.193 9 C -0.098 4.098 10 C -0.230 4.230 11 C 0.094 3.906 12 N -0.291 5.291 13 C -0.005 4.005 14 C -0.141 4.141 15 C -0.176 4.176 16 C -0.118 4.118 17 C -0.241 4.241 18 C 0.022 3.978 19 O -0.133 6.133 20 C -0.485 4.485 21 H 0.116 0.884 22 C -0.219 4.219 23 N -0.551 5.551 24 Si 0.834 3.166 25 H -0.176 1.176 26 H -0.200 1.200 27 H -0.191 1.191 28 H 0.129 0.871 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.163 0.837 33 H 0.114 0.886 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.233 0.767 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.051 -0.074 -10.142 14.279 hybrid contribution -1.264 -0.862 1.070 1.867 sum 8.787 -0.937 -9.072 12.664 Atomic orbital electron populations 1.21520 0.79738 1.03778 1.00434 1.45676 1.07948 1.08781 1.75258 1.21272 0.91292 0.83560 0.75133 1.90723 1.71462 1.33243 1.50335 1.20549 0.89852 0.95748 1.06749 1.19067 1.07880 0.95990 0.92440 1.21061 0.96027 0.95433 0.96404 1.21239 1.04334 0.95092 0.98673 1.21208 0.97184 1.00133 0.91323 1.21172 1.08279 0.93368 1.00213 1.17993 0.95127 0.92297 0.85144 1.41982 1.56468 1.28918 1.01738 1.17333 0.95219 1.04290 0.83684 1.20973 0.92780 1.00401 0.99945 1.21030 1.01646 1.03694 0.91272 1.21113 0.93178 0.97886 0.99626 1.21167 1.00353 1.05790 0.96808 1.19731 0.87894 0.95450 0.94718 1.83881 1.27716 1.63525 1.38226 1.21764 0.98594 1.39474 0.88682 0.88444 1.26462 0.97132 0.95843 1.02441 1.70214 1.19013 1.36891 1.28972 0.84592 0.77390 0.78784 0.75850 1.17583 1.19954 1.19144 0.87053 0.95915 0.92535 0.74549 0.83660 0.88559 0.83628 0.83392 0.83674 0.85874 0.76745 0.83778 0.82700 0.83661 0.86235 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.56 10.70 127.77 1.37 3.93 16 2 N -0.72 -20.12 5.71 -484.52 -2.77 -22.89 16 3 C 0.50 17.36 7.63 87.66 0.67 18.03 16 4 O -0.58 -26.79 16.03 -3.02 -0.05 -26.84 16 5 C -0.09 -2.43 5.21 29.10 0.15 -2.28 16 6 C -0.15 -4.76 4.39 -19.73 -0.09 -4.85 16 7 C -0.07 -1.86 9.68 22.25 0.22 -1.65 16 8 C -0.17 -4.26 10.04 22.30 0.22 -4.03 16 9 C -0.08 -2.17 10.04 22.25 0.22 -1.94 16 10 C -0.21 -7.13 7.70 22.40 0.17 -6.95 16 11 C 0.20 7.33 6.30 38.23 0.24 7.57 16 12 N -0.67 -29.00 5.14 -180.12 -0.93 -29.93 16 13 C 0.09 4.05 6.12 38.31 0.23 4.29 16 14 C -0.12 -4.26 7.41 22.38 0.17 -4.10 16 15 C -0.16 -4.92 10.04 22.29 0.22 -4.69 16 16 C -0.10 -3.41 10.04 22.28 0.22 -3.18 16 17 C -0.22 -9.79 9.16 22.37 0.20 -9.59 16 18 C 0.07 3.75 6.67 22.70 0.15 3.91 16 19 O -0.23 -13.66 9.25 -22.87 -0.21 -13.87 16 20 C -0.41 -24.10 9.49 67.91 0.64 -23.46 16 21 H 0.10 5.32 5.21 -2.91 -0.02 5.31 16 22 C -0.02 -1.21 5.49 84.82 0.47 -0.75 16 23 N -0.91 -56.26 13.67 21.61 0.30 -55.96 16 24 Si 1.01 43.85 29.55 68.60 2.03 45.88 16 25 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.42 8.00 8.83 -92.71 -0.82 7.18 16 32 H 0.15 2.52 8.05 -2.39 -0.02 2.50 16 33 H 0.10 2.62 7.10 -2.38 -0.02 2.61 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.12 4.33 5.43 -2.91 -0.02 4.31 16 38 H 0.40 18.60 6.78 -92.70 -0.63 17.97 16 39 H 0.14 4.52 5.99 -2.91 -0.02 4.50 16 40 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -82.85 362.82 3.49 -79.37 By element: Atomic # 1 Polarization: 54.37 SS G_CDS: -0.37 Total: 53.99 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 5.49 Total: -29.74 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.40 Total: -108.79 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.26 Total: -40.71 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -82.85 3.49 -79.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.870 kcal (2) G-P(sol) polarization free energy of solvation -82.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds