Wall clock time and date at job start Tue Mar 31 2020 14:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99640 * 2 1 4 4 O 1.21275 * 120.00055 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99743 * 179.97438 * 3 2 1 6 6 C 1.50693 * 109.46935 * 179.97438 * 5 3 2 7 7 C 1.38313 * 119.96567 * 89.99806 * 6 5 3 8 8 C 1.38274 * 120.15725 * 179.97438 * 7 6 5 9 9 C 1.38107 * 120.07562 * 0.04999 * 8 7 6 10 10 C 1.38917 * 119.92614 * 359.97146 * 9 8 7 11 11 N 1.39684 * 120.08163 * 179.97438 * 10 9 8 12 12 C 1.39798 * 119.99534 * 328.85448 * 11 10 9 13 13 C 1.38968 * 120.00655 * 333.87211 * 12 11 10 14 14 C 1.38006 * 119.98990 * 179.72119 * 13 12 11 15 15 C 1.38912 * 120.00552 * 0.55609 * 14 13 12 16 16 O 1.35787 * 119.99095 * 179.70221 * 15 14 13 17 17 C 1.34814 * 116.99615 * 186.85181 * 16 15 14 18 18 H 1.08001 * 120.00011 * 354.59617 * 17 16 15 19 19 C 1.38611 * 119.99873 * 174.60273 * 17 16 15 20 20 N 1.31589 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47558 * 89.99539 * 21 19 17 23 23 H 1.48508 * 109.47015 * 209.99705 * 21 19 17 24 24 H 1.48504 * 109.47061 * 329.99182 * 21 19 17 25 25 C 1.38910 * 120.01205 * 359.71696 * 15 14 13 26 26 C 1.37989 * 120.01302 * 0.02562 * 25 15 14 27 27 C 1.38075 * 119.96183 * 270.29515 * 6 5 3 28 28 H 1.08995 * 109.47646 * 300.00380 * 1 2 3 29 29 H 1.09000 * 109.47039 * 60.00942 * 1 2 3 30 30 H 1.08999 * 109.47214 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00343 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46922 * 59.99257 * 5 3 2 33 33 H 1.09001 * 109.46728 * 299.99879 * 5 3 2 34 34 H 1.08009 * 119.92239 * 0.02562 * 7 6 5 35 35 H 1.08003 * 119.96067 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.03722 * 179.97438 * 9 8 7 37 37 H 0.96991 * 120.00128 * 149.12939 * 11 10 9 38 38 H 1.07997 * 120.00736 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.99423 * 180.29467 * 14 13 12 40 40 H 0.96994 * 120.00002 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99310 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.00862 * 179.97438 * 26 25 15 43 43 H 1.07999 * 120.03705 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1481 2.5881 -0.0002 7 6 4.3779 3.2402 1.1977 8 6 4.8392 4.5437 1.2016 9 6 5.0712 5.1994 0.0085 10 6 4.8412 4.5477 -1.1966 11 7 5.0742 5.2079 -2.4052 12 6 4.8988 6.5922 -2.4906 13 6 4.0186 7.2356 -1.6290 14 6 3.8500 8.6030 -1.7097 15 6 4.5514 9.3345 -2.6597 16 8 4.3807 10.6791 -2.7429 17 6 4.9789 11.3093 -3.7736 18 1 5.6324 10.7609 -4.4360 19 6 4.7554 12.6611 -3.9833 20 7 3.9589 13.3291 -3.1765 21 14 5.5848 13.5345 -5.4110 22 1 4.7140 13.4581 -6.6114 23 1 5.8133 14.9581 -5.0550 24 1 6.8867 12.8819 -5.7016 25 6 5.4271 8.6908 -3.5248 26 6 5.6001 7.3244 -3.4411 27 6 4.3726 3.2395 -1.1967 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6531 -0.8891 33 1 4.0088 0.6537 0.8909 34 1 4.1973 2.7298 2.1323 35 1 5.0179 5.0498 2.1389 36 1 5.4312 6.2177 0.0123 37 1 5.3539 4.7054 -3.1863 38 1 3.4695 6.6663 -0.8936 39 1 3.1694 9.1037 -1.0370 40 1 3.8022 14.2750 -3.3234 41 1 5.9720 9.2598 -4.2636 42 1 6.2807 6.8239 -4.1141 43 1 4.1888 2.7312 -2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:59 Heat of formation + Delta-G solvation = -4.572119 kcal Electronic energy + Delta-G solvation = -25717.231944 eV Core-core repulsion = 21921.084868 eV Total energy + Delta-G solvation = -3796.147076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27267 -39.52129 -38.61862 -36.93222 -34.88053 -34.51206 -32.61648 -32.14603 -30.34880 -29.85511 -28.46419 -27.13129 -26.06122 -25.17582 -22.74410 -21.95806 -21.64608 -20.94050 -20.14305 -18.01696 -17.58735 -17.16670 -16.97215 -16.50141 -16.01473 -15.76685 -15.62985 -14.74674 -14.50111 -14.27262 -14.07129 -13.78148 -13.69133 -13.50529 -13.36453 -13.11270 -12.80883 -12.64915 -12.61163 -12.37405 -12.11756 -11.82968 -11.62387 -11.55192 -11.19380 -11.07459 -10.96994 -10.64146 -10.41659 -10.20198 -9.91238 -9.45522 -9.30382 -8.79471 -8.68614 -8.22232 -7.95847 -6.50295 -6.39158 -3.96809 1.43480 1.54864 2.16440 2.42159 2.46459 2.95294 3.15471 3.16512 3.20899 3.67232 3.94441 4.00931 4.46748 4.60583 4.68470 4.78478 4.95548 5.08908 5.13191 5.15796 5.18606 5.30920 5.36320 5.46447 5.48673 5.58711 5.67123 5.73305 5.84950 6.04259 6.05893 6.18442 6.24792 6.42037 6.56072 6.57343 6.69675 6.82946 6.85437 7.04210 7.09854 7.15496 7.26730 7.39820 7.58576 7.93105 7.97949 8.04995 8.07771 9.06197 9.77868 10.78950 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.002101 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.624033 B =13326.709994 C =13549.623321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.520 6.520 5 C -0.098 4.098 6 C -0.040 4.040 7 C -0.152 4.152 8 C -0.084 4.084 9 C -0.165 4.165 10 C 0.202 3.798 11 N -0.685 5.685 12 C 0.078 3.922 13 C -0.111 4.111 14 C -0.162 4.162 15 C 0.132 3.868 16 O -0.181 6.181 17 C -0.389 4.389 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.206 4.206 26 C -0.112 4.112 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.401 0.599 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.269 0.731 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -27.934 5.806 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.395 5.395 3 C 0.295 3.705 4 O -0.394 6.394 5 C -0.138 4.138 6 C -0.041 4.041 7 C -0.172 4.172 8 C -0.103 4.103 9 C -0.186 4.186 10 C 0.102 3.898 11 N -0.308 5.308 12 C -0.017 4.017 13 C -0.132 4.132 14 C -0.182 4.182 15 C 0.079 3.921 16 O -0.085 6.085 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.167 4.167 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.226 4.226 26 C -0.133 4.133 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.235 0.765 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.414 -26.613 6.016 27.287 hybrid contribution 0.678 -0.254 -1.134 1.345 sum 0.264 -26.867 4.882 27.308 Atomic orbital electron populations 1.21519 0.79693 1.02022 1.02471 1.45841 1.07759 1.08709 1.77229 1.20711 0.90090 0.83625 0.76057 1.90782 1.70192 1.31100 1.47312 1.20634 0.91849 0.96350 1.04969 1.18860 0.98345 0.93750 0.93180 1.20694 1.04272 0.95478 0.96733 1.20877 0.97740 0.94209 0.97488 1.21086 1.04698 1.01596 0.91241 1.17667 0.94358 0.91448 0.86346 1.41845 1.74310 1.04997 1.09671 1.17281 1.00722 0.82260 1.01393 1.20524 0.98161 0.93834 1.00677 1.20085 1.03649 0.92597 1.01853 1.19334 0.93646 0.85228 0.93886 1.83989 1.65658 1.13389 1.45447 1.21275 1.26794 0.92475 1.06038 0.89238 1.25264 0.96995 0.95722 0.98671 1.70052 1.34373 1.09270 1.36275 0.85730 0.79180 0.78691 0.79907 1.19961 1.20322 1.19281 1.20985 1.03816 0.93925 1.03831 1.20395 0.99590 0.93567 0.99739 1.20507 1.05154 0.95344 0.97561 0.92254 0.92228 0.90794 0.76629 0.88127 0.87997 0.86866 0.86112 0.85348 0.76457 0.86384 0.86166 0.92122 0.85242 0.87300 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.74 -4.74 5.71 -67.08 -0.38 -5.12 16 3 C 0.51 5.10 7.82 -10.98 -0.09 5.01 16 4 O -0.52 -7.98 16.03 5.56 0.09 -7.89 16 5 C -0.10 -0.74 5.83 -29.04 -0.17 -0.91 16 6 C -0.04 -0.46 4.37 -104.66 -0.46 -0.92 16 7 C -0.15 -1.79 9.70 -39.54 -0.38 -2.17 16 8 C -0.08 -1.08 10.04 -39.62 -0.40 -1.48 16 9 C -0.16 -2.42 7.75 -39.38 -0.31 -2.72 16 10 C 0.20 2.93 5.93 -83.76 -0.50 2.43 16 11 N -0.68 -10.15 5.47 -8.37 -0.05 -10.19 16 12 C 0.08 1.40 6.04 -83.68 -0.51 0.89 16 13 C -0.11 -2.14 7.85 -39.40 -0.31 -2.45 16 14 C -0.16 -3.54 9.98 -39.42 -0.39 -3.93 16 15 C 0.13 3.24 6.64 -39.08 -0.26 2.98 16 16 O -0.18 -5.22 9.76 -0.02 0.00 -5.22 16 17 C -0.39 -10.98 9.48 30.87 0.29 -10.69 16 18 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 19 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 20 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 21 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.21 -4.48 9.16 -39.42 -0.36 -4.84 16 26 C -0.11 -2.07 9.94 -39.40 -0.39 -2.46 16 27 C -0.16 -2.08 9.61 -39.37 -0.38 -2.46 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 32 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.13 2.03 6.55 -52.48 -0.34 1.69 16 37 H 0.40 4.93 8.89 -40.82 -0.36 4.57 16 38 H 0.12 2.16 6.34 -52.49 -0.33 1.83 16 39 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.80 5.65 -52.49 -0.30 2.51 16 42 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -35.41 368.52 -8.44 -43.85 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.33 Total: 9.82 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -4.06 Total: -21.60 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.33 Total: -40.25 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.41 -8.44 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.278 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds