Wall clock time and date at job start Tue Mar 31 2020 14:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99640 * 2 1 4 4 O 1.21275 * 120.00055 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99743 * 179.97438 * 3 2 1 6 6 C 1.50693 * 109.46935 * 179.97438 * 5 3 2 7 7 C 1.38313 * 119.96567 * 89.99806 * 6 5 3 8 8 C 1.38274 * 120.15725 * 179.97438 * 7 6 5 9 9 C 1.38107 * 120.07562 * 0.04999 * 8 7 6 10 10 C 1.38917 * 119.92614 * 359.97146 * 9 8 7 11 11 N 1.39684 * 120.08163 * 179.97438 * 10 9 8 12 12 C 1.39798 * 119.99534 * 328.85448 * 11 10 9 13 13 C 1.38968 * 120.00655 * 333.87211 * 12 11 10 14 14 C 1.38006 * 119.98990 * 179.72119 * 13 12 11 15 15 C 1.38912 * 120.00552 * 0.55609 * 14 13 12 16 16 O 1.35787 * 119.99095 * 179.70221 * 15 14 13 17 17 C 1.34814 * 116.99615 * 186.85181 * 16 15 14 18 18 H 1.08001 * 120.00011 * 354.59617 * 17 16 15 19 19 C 1.38611 * 119.99873 * 174.60273 * 17 16 15 20 20 N 1.31589 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47558 * 89.99539 * 21 19 17 23 23 H 1.48508 * 109.47015 * 209.99705 * 21 19 17 24 24 H 1.48504 * 109.47061 * 329.99182 * 21 19 17 25 25 C 1.38910 * 120.01205 * 359.71696 * 15 14 13 26 26 C 1.37989 * 120.01302 * 0.02562 * 25 15 14 27 27 C 1.38075 * 119.96183 * 270.29515 * 6 5 3 28 28 H 1.08995 * 109.47646 * 300.00380 * 1 2 3 29 29 H 1.09000 * 109.47039 * 60.00942 * 1 2 3 30 30 H 1.08999 * 109.47214 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00343 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46922 * 59.99257 * 5 3 2 33 33 H 1.09001 * 109.46728 * 299.99879 * 5 3 2 34 34 H 1.08009 * 119.92239 * 0.02562 * 7 6 5 35 35 H 1.08003 * 119.96067 * 180.02562 * 8 7 6 36 36 H 1.08005 * 120.03722 * 179.97438 * 9 8 7 37 37 H 0.96991 * 120.00128 * 149.12939 * 11 10 9 38 38 H 1.07997 * 120.00736 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.99423 * 180.29467 * 14 13 12 40 40 H 0.96994 * 120.00002 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99310 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.00862 * 179.97438 * 26 25 15 43 43 H 1.07999 * 120.03705 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1481 2.5881 -0.0002 7 6 4.3779 3.2402 1.1977 8 6 4.8392 4.5437 1.2016 9 6 5.0712 5.1994 0.0085 10 6 4.8412 4.5477 -1.1966 11 7 5.0742 5.2079 -2.4052 12 6 4.8988 6.5922 -2.4906 13 6 4.0186 7.2356 -1.6290 14 6 3.8500 8.6030 -1.7097 15 6 4.5514 9.3345 -2.6597 16 8 4.3807 10.6791 -2.7429 17 6 4.9789 11.3093 -3.7736 18 1 5.6324 10.7609 -4.4360 19 6 4.7554 12.6611 -3.9833 20 7 3.9589 13.3291 -3.1765 21 14 5.5848 13.5345 -5.4110 22 1 4.7140 13.4581 -6.6114 23 1 5.8133 14.9581 -5.0550 24 1 6.8867 12.8819 -5.7016 25 6 5.4271 8.6908 -3.5248 26 6 5.6001 7.3244 -3.4411 27 6 4.3726 3.2395 -1.1967 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6531 -0.8891 33 1 4.0088 0.6537 0.8909 34 1 4.1973 2.7298 2.1323 35 1 5.0179 5.0498 2.1389 36 1 5.4312 6.2177 0.0123 37 1 5.3539 4.7054 -3.1863 38 1 3.4695 6.6663 -0.8936 39 1 3.1694 9.1037 -1.0370 40 1 3.8022 14.2750 -3.3234 41 1 5.9720 9.2598 -4.2636 42 1 6.2807 6.8239 -4.1141 43 1 4.1888 2.7312 -2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:58 Heat of formation + Delta-G solvation = -28.896609 kcal Electronic energy + Delta-G solvation = -25718.286733 eV Core-core repulsion = 21921.084868 eV Total energy + Delta-G solvation = -3797.201865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30893 -40.76313 -39.97308 -38.46987 -35.95981 -35.52044 -34.17550 -33.49127 -31.95076 -31.10084 -29.30104 -28.65782 -27.12383 -26.71270 -24.09669 -23.27671 -22.96513 -22.02983 -21.15273 -19.84788 -18.92310 -18.30001 -18.17064 -17.76266 -16.94987 -16.67762 -16.56155 -16.25150 -16.03804 -15.60606 -15.52473 -15.30486 -14.75264 -14.70910 -14.45800 -14.28054 -14.16136 -13.97538 -13.68835 -13.44662 -13.20180 -13.15892 -13.04776 -12.82978 -12.69592 -12.42181 -12.22627 -12.11184 -11.96625 -11.40445 -11.16981 -10.95740 -10.66848 -10.08601 -9.87998 -9.66030 -9.36146 -8.43351 -7.98676 -6.09043 0.35400 0.46141 0.51950 0.94038 1.36283 1.46131 1.53947 1.70834 2.19944 2.32198 2.47927 2.80842 3.01106 3.18125 3.55800 3.72103 4.00133 4.05815 4.09189 4.13626 4.27272 4.37711 4.47933 4.48752 4.52501 4.57795 4.62766 4.63626 4.71480 4.81422 4.97311 4.99200 5.06066 5.14357 5.19688 5.37685 5.41624 5.49368 5.52457 5.62172 5.66722 5.71354 5.86789 6.05073 6.08738 6.55591 6.63277 6.88140 7.01349 7.36115 7.84064 8.80428 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.002101 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.624033 B =13326.709994 C =13549.623321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.724 5.724 3 C 0.505 3.495 4 O -0.584 6.584 5 C -0.093 4.093 6 C -0.043 4.043 7 C -0.151 4.151 8 C -0.094 4.094 9 C -0.186 4.186 10 C 0.177 3.823 11 N -0.678 5.678 12 C 0.111 3.889 13 C -0.112 4.112 14 C -0.169 4.169 15 C 0.089 3.911 16 O -0.235 6.235 17 C -0.409 4.409 18 H 0.103 0.897 19 C -0.028 4.028 20 N -0.924 5.924 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.251 1.251 25 C -0.204 4.204 26 C -0.110 4.110 27 C -0.163 4.163 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.421 0.579 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.416 0.584 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -32.707 5.179 33.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.378 5.378 3 C 0.292 3.708 4 O -0.464 6.464 5 C -0.132 4.132 6 C -0.044 4.044 7 C -0.170 4.170 8 C -0.112 4.112 9 C -0.207 4.207 10 C 0.079 3.921 11 N -0.303 5.303 12 C 0.015 3.985 13 C -0.133 4.133 14 C -0.189 4.189 15 C 0.039 3.961 16 O -0.142 6.142 17 C -0.486 4.486 18 H 0.120 0.880 19 C -0.224 4.224 20 N -0.563 5.563 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.175 1.175 25 C -0.224 4.224 26 C -0.131 4.131 27 C -0.185 4.185 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.259 0.741 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.254 0.746 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.892 -31.557 5.410 32.030 hybrid contribution 0.227 0.698 -0.725 1.031 sum 1.119 -30.860 4.685 31.233 Atomic orbital electron populations 1.21607 0.79562 1.04017 1.00932 1.45735 1.07983 1.08820 1.75220 1.21159 0.91090 0.83490 0.75024 1.90770 1.71531 1.33408 1.50667 1.20730 0.89915 0.94320 1.08216 1.19327 0.96875 0.95715 0.92457 1.21094 1.02698 0.95013 0.98198 1.21129 0.97633 0.95004 0.97472 1.21076 1.06127 1.01049 0.92460 1.17844 0.95967 0.92468 0.85816 1.41745 1.74329 1.03493 1.10777 1.17384 0.98067 0.83926 0.99156 1.20584 0.98648 0.92690 1.01414 1.20200 1.03537 0.93703 1.01439 1.19769 0.95886 0.84481 0.96012 1.83951 1.67883 1.15547 1.46867 1.21816 1.27122 0.93223 1.06411 0.87958 1.26605 0.97710 0.96292 1.01834 1.70211 1.37207 1.09720 1.39139 0.84572 0.78582 0.77183 0.75773 1.18936 1.19782 1.17455 1.21096 1.02921 0.95389 1.02974 1.20687 0.99838 0.92214 1.00329 1.20789 1.04097 0.94529 0.99054 0.93705 0.93971 0.87000 0.74143 0.85024 0.84537 0.84393 0.84736 0.87365 0.74634 0.85484 0.86892 0.92004 0.85415 0.83302 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.20 16 2 N -0.72 -6.77 5.71 -484.52 -2.77 -9.54 16 3 C 0.50 8.60 7.82 87.66 0.69 9.28 16 4 O -0.58 -17.24 16.03 -3.01 -0.05 -17.29 16 5 C -0.09 -0.98 5.83 29.10 0.17 -0.81 16 6 C -0.04 -0.83 4.37 -19.89 -0.09 -0.92 16 7 C -0.15 -3.12 9.70 22.30 0.22 -2.90 16 8 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 9 C -0.19 -5.33 7.75 22.40 0.17 -5.15 16 10 C 0.18 4.83 5.93 38.23 0.23 5.06 16 11 N -0.68 -18.55 5.47 -180.38 -0.99 -19.54 16 12 C 0.11 3.85 6.04 38.22 0.23 4.08 16 13 C -0.11 -4.38 7.85 22.39 0.18 -4.20 16 14 C -0.17 -7.79 9.98 22.38 0.22 -7.57 16 15 C 0.09 4.58 6.64 22.59 0.15 4.73 16 16 O -0.24 -14.56 9.76 -22.98 -0.22 -14.78 16 17 C -0.41 -24.26 9.48 67.91 0.64 -23.61 16 18 H 0.10 5.50 5.21 -2.91 -0.02 5.48 16 19 C -0.03 -1.61 5.49 84.82 0.47 -1.14 16 20 N -0.92 -58.10 13.67 21.61 0.30 -57.81 16 21 Si 1.02 43.65 29.55 68.60 2.03 45.68 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 25 C -0.20 -9.02 9.16 22.37 0.20 -8.81 16 26 C -0.11 -3.88 9.94 22.39 0.22 -3.65 16 27 C -0.16 -3.68 9.61 22.40 0.22 -3.46 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.42 0.40 8.83 -92.71 -0.82 -0.42 16 32 H 0.13 0.63 8.09 -2.39 -0.02 0.61 16 33 H 0.14 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.11 3.48 6.55 -2.91 -0.02 3.46 16 37 H 0.42 8.88 8.89 -92.72 -0.82 8.06 16 38 H 0.13 4.72 6.34 -2.91 -0.02 4.70 16 39 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.13 5.61 5.65 -2.91 -0.02 5.59 16 42 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -84.47 368.52 3.23 -81.24 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.58 Total: 30.96 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 5.51 Total: -38.92 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -3.46 Total: -86.89 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.27 Total: -32.07 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -84.47 3.23 -81.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -84.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds