Wall clock time and date at job start Tue Mar 31 2020 14:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99853 * 2 1 4 4 O 1.21579 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.47615 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.39732 * 120.06124 * 0.29498 * 5 3 2 7 7 C 1.37821 * 120.05559 * 180.27700 * 6 5 3 8 8 C 1.38774 * 120.17802 * 359.44719 * 7 6 5 9 9 O 1.35783 * 119.94178 * 180.27813 * 8 7 6 10 10 C 1.42898 * 117.00316 * 0.02562 * 9 8 7 11 11 C 1.39637 * 120.11662 * 0.25651 * 8 7 6 12 12 N 1.39819 * 120.03197 * 180.02562 * 11 8 7 13 13 C 1.38619 * 120.00233 * 186.29874 * 12 11 8 14 14 C 1.38830 * 120.30148 * 258.90945 * 13 12 11 15 15 C 1.38102 * 120.02282 * 179.97438 * 14 13 12 16 16 C 1.38943 * 120.63275 * 0.04001 * 15 14 13 17 17 C 1.36415 * 120.61483 * 0.02562 * 16 15 14 18 18 C 1.40746 * 119.95067 * 359.67332 * 17 16 15 19 19 C 1.41000 * 120.31210 * 180.30545 * 18 17 16 20 20 H 1.08007 * 120.00301 * 205.16537 * 19 18 17 21 21 C 1.39903 * 119.99927 * 25.16194 * 19 18 17 22 22 N 1.30889 * 120.00087 * 17.04507 * 21 19 18 23 23 Si 1.86799 * 119.99886 * 197.04882 * 21 19 18 24 24 H 1.48498 * 109.47538 * 89.99997 * 23 21 19 25 25 H 1.48504 * 109.47337 * 210.00028 * 23 21 19 26 26 H 1.48500 * 109.47210 * 329.99632 * 23 21 19 27 27 C 1.38413 * 119.94012 * 0.02562 * 11 8 7 28 28 H 1.08993 * 109.47494 * 299.99519 * 1 2 3 29 29 H 1.08997 * 109.47055 * 60.00318 * 1 2 3 30 30 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99753 * 179.97438 * 2 1 3 32 32 H 1.08007 * 119.97257 * 0.02562 * 6 5 3 33 33 H 1.08007 * 119.90668 * 179.72866 * 7 6 5 34 34 H 1.08999 * 109.46622 * 60.00238 * 10 9 8 35 35 H 1.09000 * 109.47466 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47015 * 300.00039 * 10 9 8 37 37 H 0.96996 * 119.99766 * 6.30494 * 12 11 8 38 38 H 1.07998 * 119.99034 * 359.97161 * 14 13 12 39 39 H 1.07998 * 119.68323 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.68989 * 179.97438 * 16 15 14 41 41 H 1.07989 * 120.02691 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00336 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.08409 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3149 -0.0422 -0.0051 7 6 5.6931 -0.0421 0.0012 8 6 6.3907 1.1576 0.0016 9 8 7.7485 1.1521 0.0021 10 6 8.3921 -0.1238 0.0016 11 6 5.6987 2.3704 0.0011 12 7 6.4032 3.5781 0.0010 13 6 5.7219 4.7781 0.1321 14 6 5.4660 5.5639 -0.9834 15 6 4.7863 6.7582 -0.8462 16 6 4.3528 7.1867 0.4024 17 6 4.5913 6.4357 1.5160 18 6 5.2763 5.2113 1.4043 19 6 5.5213 4.4259 2.5494 20 1 6.3523 3.7361 2.5635 21 6 4.6880 4.5401 3.6674 22 7 3.5119 5.1029 3.5522 23 14 5.2540 3.8896 5.3245 24 1 5.9709 4.9628 6.0590 25 1 4.0744 3.4525 6.1138 26 1 6.1664 2.7363 5.1181 27 6 4.3145 2.3760 0.0006 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.9500 -0.8401 0.0004 32 1 3.7754 -0.9779 -0.0103 33 1 6.2317 -0.9783 0.0012 34 1 8.0973 -0.6790 -0.8888 35 1 9.4733 0.0146 0.0026 36 1 8.0967 -0.6801 0.8911 37 1 7.3688 3.5762 -0.0910 38 1 5.7988 5.2412 -1.9589 39 1 4.5899 7.3650 -1.7177 40 1 3.8229 8.1235 0.4923 41 1 4.2498 6.7776 2.4817 42 1 2.9340 5.1818 4.3272 43 1 3.7770 3.3127 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215317650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:12 Heat of formation + Delta-G solvation = -15.973191 kcal Electronic energy + Delta-G solvation = -27820.496896 eV Core-core repulsion = 24023.855432 eV Total energy + Delta-G solvation = -3796.641464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.10635 -39.01667 -37.99911 -36.52157 -34.53627 -34.18976 -33.63245 -30.14635 -29.77040 -29.50981 -27.56753 -27.47750 -26.01816 -25.02240 -22.70579 -21.99468 -20.93955 -20.16612 -19.78003 -18.14835 -17.33894 -17.22433 -16.61717 -15.64062 -15.50554 -15.43978 -15.04525 -14.84531 -14.77473 -14.14257 -13.73425 -13.68405 -13.59009 -13.03094 -12.83678 -12.65513 -12.42247 -12.37780 -12.21590 -12.10656 -11.66650 -11.45949 -11.20031 -11.07528 -10.83154 -10.76082 -10.59438 -10.43238 -10.19439 -9.61656 -9.54206 -9.25043 -9.17139 -8.91921 -8.06277 -7.41584 -7.39661 -6.79635 -6.42295 -4.34380 1.45117 2.01066 2.75374 2.95320 3.07502 3.11196 3.24881 3.39019 3.47258 3.55506 3.93787 4.39260 4.50286 4.65551 5.06381 5.08831 5.22310 5.26386 5.35341 5.40443 5.55112 5.60015 5.64800 5.79818 5.86993 6.08072 6.24533 6.30102 6.43672 6.54683 6.60164 6.63718 6.65999 6.90023 7.06954 7.17443 7.26776 7.35287 7.44341 7.63817 7.75992 7.79793 7.96083 8.11480 8.26581 8.39746 8.58277 8.61099 8.77370 8.87377 9.10218 10.17410 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007847 B = 0.005690 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3567.527592 B = 4920.136251 C = 5488.017056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.740 5.740 3 C 0.560 3.440 4 O -0.526 6.526 5 C -0.129 4.129 6 C -0.126 4.126 7 C -0.176 4.176 8 C 0.060 3.940 9 O -0.318 6.318 10 C 0.033 3.967 11 C 0.217 3.783 12 N -0.655 5.655 13 C -0.009 4.009 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.101 4.101 17 C -0.155 4.155 18 C 0.117 3.883 19 C -0.440 4.440 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.780 5.780 23 Si 0.904 3.096 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.076 4.076 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.281 0.719 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -12.779 -4.420 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.394 5.394 3 C 0.348 3.652 4 O -0.402 6.402 5 C -0.133 4.133 6 C -0.147 4.147 7 C -0.195 4.195 8 C 0.011 3.989 9 O -0.232 6.232 10 C -0.062 4.062 11 C 0.112 3.888 12 N -0.277 5.277 13 C -0.103 4.103 14 C -0.102 4.102 15 C -0.260 4.260 16 C -0.119 4.119 17 C -0.175 4.175 18 C 0.113 3.887 19 C -0.469 4.469 20 H 0.096 0.904 21 C -0.143 4.143 22 N -0.404 5.404 23 Si 0.729 3.271 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.099 4.099 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.456 -11.631 -4.256 12.470 hybrid contribution 0.614 -1.115 0.874 1.544 sum 2.070 -12.746 -3.382 13.348 Atomic orbital electron populations 1.21468 0.79960 1.01591 1.02350 1.45696 1.07361 1.08726 1.77586 1.18365 0.87641 0.83394 0.75756 1.90817 1.69964 1.31024 1.48382 1.19437 0.91837 0.93936 1.08115 1.20531 0.93404 0.96078 1.04732 1.20674 0.94713 0.95943 1.08172 1.18658 0.82039 0.92922 1.05296 1.85941 1.16681 1.30878 1.89653 1.22921 0.97657 0.84779 1.00847 1.17201 0.90651 0.84268 0.96685 1.41000 1.07359 1.00938 1.78396 1.17255 1.11802 0.88725 0.92498 1.20741 0.98410 0.95142 0.95903 1.20193 1.10059 0.99412 0.96370 1.20466 0.99560 0.98432 0.93489 1.21018 1.03949 0.94718 0.97828 1.17802 0.89050 0.90875 0.90955 1.19405 1.11226 1.19583 0.96691 0.90367 1.25928 0.93798 0.93736 1.00835 1.69856 1.06102 1.32630 1.31795 0.86367 0.79308 0.80060 0.81408 1.19253 1.20266 1.18623 1.20711 0.91152 0.98491 0.99580 0.92309 0.92405 0.91093 0.76727 0.86737 0.85814 0.93164 0.88869 0.93058 0.76895 0.89292 0.89401 0.89466 0.86327 0.90778 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.70 59.85 0.64 1.68 16 2 N -0.74 -10.12 5.66 -68.12 -0.39 -10.50 16 3 C 0.56 10.66 7.76 -12.43 -0.10 10.57 16 4 O -0.53 -12.41 16.34 5.30 0.09 -12.33 16 5 C -0.13 -2.45 5.87 -104.98 -0.62 -3.07 16 6 C -0.13 -1.90 9.53 -39.18 -0.37 -2.27 16 7 C -0.18 -2.62 9.01 -39.54 -0.36 -2.97 16 8 C 0.06 1.05 6.71 -38.86 -0.26 0.79 16 9 O -0.32 -5.02 9.73 -19.06 -0.19 -5.20 16 10 C 0.03 0.36 9.81 101.05 0.99 1.35 16 11 C 0.22 4.49 6.32 -83.63 -0.53 3.96 16 12 N -0.66 -13.97 4.64 -7.97 -0.04 -14.01 16 13 C -0.01 -0.22 4.43 -83.30 -0.37 -0.59 16 14 C -0.08 -1.87 9.96 -39.41 -0.39 -2.26 16 15 C -0.24 -5.47 10.03 -39.37 -0.40 -5.86 16 16 C -0.10 -2.40 9.96 -39.98 -0.40 -2.80 16 17 C -0.16 -4.04 8.63 -39.29 -0.34 -4.38 16 18 C 0.12 3.07 5.40 -106.63 -0.58 2.49 16 19 C -0.44 -11.56 8.42 -37.91 -0.32 -11.88 16 20 H 0.08 2.06 7.59 -52.48 -0.40 1.66 16 21 C 0.08 1.94 5.15 -17.33 -0.09 1.85 16 22 N -0.78 -20.47 10.95 55.55 0.61 -19.86 16 23 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.08 -1.67 8.81 -38.98 -0.34 -2.02 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 4.09 6.85 -40.82 -0.28 3.81 16 32 H 0.11 1.26 6.39 -52.48 -0.34 0.93 16 33 H 0.12 1.42 6.27 -52.48 -0.33 1.09 16 34 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 37 H 0.40 7.76 8.19 -40.82 -0.33 7.43 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 41 H 0.12 3.18 6.17 -52.49 -0.32 2.85 16 42 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 43 H 0.15 3.86 6.49 -52.49 -0.34 3.52 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -31.64 363.05 -8.52 -40.17 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -5.23 Total: 17.47 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.82 Total: -15.40 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.19 Total: -44.37 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.10 Total: -17.53 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.64 -8.52 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215317650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.193 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds