Wall clock time and date at job start Tue Mar 31 2020 14:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99853 * 2 1 4 4 O 1.21579 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.47615 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.39732 * 120.06124 * 0.29498 * 5 3 2 7 7 C 1.37821 * 120.05559 * 180.27700 * 6 5 3 8 8 C 1.38774 * 120.17802 * 359.44719 * 7 6 5 9 9 O 1.35783 * 119.94178 * 180.27813 * 8 7 6 10 10 C 1.42898 * 117.00316 * 0.02562 * 9 8 7 11 11 C 1.39637 * 120.11662 * 0.25651 * 8 7 6 12 12 N 1.39819 * 120.03197 * 180.02562 * 11 8 7 13 13 C 1.38619 * 120.00233 * 186.29874 * 12 11 8 14 14 C 1.38830 * 120.30148 * 258.90945 * 13 12 11 15 15 C 1.38102 * 120.02282 * 179.97438 * 14 13 12 16 16 C 1.38943 * 120.63275 * 0.04001 * 15 14 13 17 17 C 1.36415 * 120.61483 * 0.02562 * 16 15 14 18 18 C 1.40746 * 119.95067 * 359.67332 * 17 16 15 19 19 C 1.41000 * 120.31210 * 180.30545 * 18 17 16 20 20 H 1.08007 * 120.00301 * 205.16537 * 19 18 17 21 21 C 1.39903 * 119.99927 * 25.16194 * 19 18 17 22 22 N 1.30889 * 120.00087 * 17.04507 * 21 19 18 23 23 Si 1.86799 * 119.99886 * 197.04882 * 21 19 18 24 24 H 1.48498 * 109.47538 * 89.99997 * 23 21 19 25 25 H 1.48504 * 109.47337 * 210.00028 * 23 21 19 26 26 H 1.48500 * 109.47210 * 329.99632 * 23 21 19 27 27 C 1.38413 * 119.94012 * 0.02562 * 11 8 7 28 28 H 1.08993 * 109.47494 * 299.99519 * 1 2 3 29 29 H 1.08997 * 109.47055 * 60.00318 * 1 2 3 30 30 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99753 * 179.97438 * 2 1 3 32 32 H 1.08007 * 119.97257 * 0.02562 * 6 5 3 33 33 H 1.08007 * 119.90668 * 179.72866 * 7 6 5 34 34 H 1.08999 * 109.46622 * 60.00238 * 10 9 8 35 35 H 1.09000 * 109.47466 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47015 * 300.00039 * 10 9 8 37 37 H 0.96996 * 119.99766 * 6.30494 * 12 11 8 38 38 H 1.07998 * 119.99034 * 359.97161 * 14 13 12 39 39 H 1.07998 * 119.68323 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.68989 * 179.97438 * 16 15 14 41 41 H 1.07989 * 120.02691 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00336 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.08409 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3149 -0.0422 -0.0051 7 6 5.6931 -0.0421 0.0012 8 6 6.3907 1.1576 0.0016 9 8 7.7485 1.1521 0.0021 10 6 8.3921 -0.1238 0.0016 11 6 5.6987 2.3704 0.0011 12 7 6.4032 3.5781 0.0010 13 6 5.7219 4.7781 0.1321 14 6 5.4660 5.5639 -0.9834 15 6 4.7863 6.7582 -0.8462 16 6 4.3528 7.1867 0.4024 17 6 4.5913 6.4357 1.5160 18 6 5.2763 5.2113 1.4043 19 6 5.5213 4.4259 2.5494 20 1 6.3523 3.7361 2.5635 21 6 4.6880 4.5401 3.6674 22 7 3.5119 5.1029 3.5522 23 14 5.2540 3.8896 5.3245 24 1 5.9709 4.9628 6.0590 25 1 4.0744 3.4525 6.1138 26 1 6.1664 2.7363 5.1181 27 6 4.3145 2.3760 0.0006 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.9500 -0.8401 0.0004 32 1 3.7754 -0.9779 -0.0103 33 1 6.2317 -0.9783 0.0012 34 1 8.0973 -0.6790 -0.8888 35 1 9.4733 0.0146 0.0026 36 1 8.0967 -0.6801 0.8911 37 1 7.3688 3.5762 -0.0910 38 1 5.7988 5.2412 -1.9589 39 1 4.5899 7.3650 -1.7177 40 1 3.8229 8.1235 0.4923 41 1 4.2498 6.7776 2.4817 42 1 2.9340 5.1818 4.3272 43 1 3.7770 3.3127 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215317650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:12 Heat of formation + Delta-G solvation = -37.137041 kcal Electronic energy + Delta-G solvation = -27821.414629 eV Core-core repulsion = 24023.855432 eV Total energy + Delta-G solvation = -3797.559197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49076 -40.41154 -39.69515 -37.92530 -36.09542 -35.61101 -35.48064 -31.64135 -31.40111 -31.21322 -29.18046 -28.52413 -27.23799 -26.82379 -24.02488 -23.51467 -22.84646 -21.64226 -21.37720 -19.51374 -19.15926 -18.54911 -18.14072 -17.32231 -16.83047 -16.74405 -16.57628 -16.15563 -16.12610 -15.87132 -15.53335 -15.07840 -14.89665 -14.52606 -14.39346 -14.08590 -14.05111 -13.61249 -13.51643 -13.42898 -13.07855 -13.05830 -12.84278 -12.75028 -12.50891 -12.22600 -11.97766 -11.89649 -11.79597 -11.48975 -11.07552 -11.05890 -10.89163 -10.17551 -9.44933 -9.33341 -9.25166 -8.65942 -7.98011 -6.31395 0.02600 0.63986 0.92712 1.07232 1.30852 1.44041 1.48680 1.94635 2.16260 2.26913 2.41440 2.72012 2.90340 3.06123 3.71190 3.90397 3.93635 4.14750 4.38477 4.43923 4.48218 4.52649 4.52744 4.57678 4.62059 4.63497 4.82102 4.83630 4.93201 4.95412 5.12940 5.17411 5.28884 5.32238 5.41664 5.43155 5.49981 5.58167 5.81121 5.86706 6.05453 6.17445 6.35218 6.39271 6.58312 6.60646 6.85609 6.91870 7.03702 7.28101 7.30940 8.31101 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007847 B = 0.005690 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3567.527592 B = 4920.136251 C = 5488.017056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.552 3.448 4 O -0.590 6.590 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.167 4.167 8 C 0.072 3.928 9 O -0.336 6.336 10 C 0.020 3.980 11 C 0.186 3.814 12 N -0.662 5.662 13 C 0.002 3.998 14 C -0.094 4.094 15 C -0.238 4.238 16 C -0.109 4.109 17 C -0.184 4.184 18 C 0.088 3.912 19 C -0.462 4.462 20 H 0.069 0.931 21 C 0.033 3.967 22 N -0.818 5.818 23 Si 0.973 3.027 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.107 4.107 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.123 0.877 31 H 0.419 0.581 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.285 0.715 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -17.078 -4.868 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.368 5.368 3 C 0.341 3.659 4 O -0.471 6.471 5 C -0.155 4.155 6 C -0.118 4.118 7 C -0.186 4.186 8 C 0.022 3.978 9 O -0.250 6.250 10 C -0.074 4.074 11 C 0.083 3.917 12 N -0.287 5.287 13 C -0.092 4.092 14 C -0.113 4.113 15 C -0.258 4.258 16 C -0.128 4.128 17 C -0.204 4.204 18 C 0.084 3.916 19 C -0.491 4.491 20 H 0.087 0.913 21 C -0.182 4.182 22 N -0.443 5.443 23 Si 0.794 3.206 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.183 1.183 27 C -0.131 4.131 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.257 0.743 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.701 -16.019 -4.722 16.917 hybrid contribution 0.280 0.063 0.847 0.894 sum 2.981 -15.956 -3.875 16.688 Atomic orbital electron populations 1.21703 0.78386 1.04609 1.01163 1.45525 1.08377 1.07863 1.75061 1.18602 0.87989 0.83971 0.75324 1.90782 1.71031 1.33573 1.51713 1.19584 0.92039 0.94478 1.09428 1.21053 0.93796 0.96220 1.00723 1.21222 0.94713 0.96712 1.05989 1.18778 0.83243 0.92478 1.03267 1.85939 1.15586 1.34291 1.89146 1.23347 0.98563 0.82987 1.02496 1.17323 0.90394 0.85179 0.98810 1.40842 1.07417 1.00598 1.79799 1.17405 1.10255 0.89519 0.92023 1.21065 0.98410 0.95248 0.96614 1.20570 1.08812 0.99525 0.96893 1.20735 0.99518 0.99096 0.93402 1.21020 1.05705 0.95713 0.97945 1.18154 0.89925 0.91229 0.92250 1.19431 1.11612 1.20221 0.97851 0.91267 1.26751 0.93461 0.93849 1.04157 1.69940 1.07180 1.34376 1.32835 0.85340 0.78917 0.79565 0.76790 1.18240 1.19508 1.18332 1.20352 0.91953 0.97665 1.03157 0.94016 0.93252 0.85817 0.74286 0.81542 0.80895 0.90907 0.86766 0.91720 0.76274 0.87196 0.86422 0.87346 0.88080 0.90431 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 10.70 127.77 1.37 3.17 16 2 N -0.71 -18.08 5.66 -487.70 -2.76 -20.84 16 3 C 0.55 21.40 7.76 86.72 0.67 22.07 16 4 O -0.59 -29.81 16.34 -3.97 -0.06 -29.88 16 5 C -0.15 -5.75 5.87 -20.10 -0.12 -5.87 16 6 C -0.10 -2.56 9.53 22.53 0.21 -2.35 16 7 C -0.17 -4.25 9.01 22.30 0.20 -4.05 16 8 C 0.07 2.39 6.71 22.74 0.15 2.54 16 9 O -0.34 -9.77 9.73 -91.12 -0.89 -10.66 16 10 C 0.02 0.34 9.81 113.37 1.11 1.45 16 11 C 0.19 7.90 6.32 38.25 0.24 8.14 16 12 N -0.66 -29.47 4.64 -179.12 -0.83 -30.30 16 13 C 0.00 0.11 4.43 39.04 0.17 0.28 16 14 C -0.09 -4.41 9.96 22.38 0.22 -4.19 16 15 C -0.24 -11.06 10.03 22.41 0.22 -10.84 16 16 C -0.11 -5.42 9.96 22.01 0.22 -5.20 16 17 C -0.18 -10.23 8.63 22.46 0.19 -10.04 16 18 C 0.09 4.94 5.40 -21.16 -0.11 4.83 16 19 C -0.46 -25.74 8.42 23.35 0.20 -25.55 16 20 H 0.07 3.84 7.59 -2.91 -0.02 3.82 16 21 C 0.03 1.77 5.15 85.24 0.44 2.21 16 22 N -0.82 -45.78 10.95 21.82 0.24 -45.55 16 23 Si 0.97 40.67 29.59 68.60 2.03 42.70 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 C -0.11 -5.01 8.81 22.66 0.20 -4.81 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.42 6.77 6.85 -92.71 -0.63 6.14 16 32 H 0.17 2.58 6.39 -2.91 -0.02 2.56 16 33 H 0.17 2.72 6.27 -2.91 -0.02 2.70 16 34 H 0.07 0.92 7.65 -2.39 -0.02 0.91 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 0.94 7.65 -2.39 -0.02 0.92 16 37 H 0.40 16.28 8.19 -92.71 -0.76 15.52 16 38 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.10 5.87 6.17 -2.92 -0.02 5.85 16 42 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 43 H 0.09 5.23 6.49 -2.91 -0.02 5.21 16 Total: -1.00 -78.91 363.05 3.00 -75.91 By element: Atomic # 1 Polarization: 47.13 SS G_CDS: -0.32 Total: 46.80 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 5.60 Total: -28.20 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -3.35 Total: -96.68 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.95 Total: -40.53 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -78.91 3.00 -75.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215317650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.777 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds