Wall clock time and date at job start Tue Mar 31 2020 14:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00476 * 2 1 4 4 O 1.21581 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00037 * 179.97438 * 3 2 1 6 6 C 1.39710 * 120.06659 * 0.02562 * 5 3 2 7 7 C 1.37824 * 120.04193 * 180.02562 * 6 5 3 8 8 C 1.38772 * 120.17679 * 0.02562 * 7 6 5 9 9 O 1.35803 * 119.93813 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00167 * 0.02562 * 9 8 7 11 11 C 1.39575 * 120.12200 * 0.02562 * 8 7 6 12 12 N 1.40000 * 120.02037 * 179.97438 * 11 8 7 13 13 C 1.39691 * 120.00198 * 71.42970 * 12 11 8 14 14 C 1.39362 * 119.95123 * 6.09789 * 13 12 11 15 15 C 1.38469 * 120.42233 * 180.02562 * 14 13 12 16 16 C 1.37693 * 120.32555 * 359.94994 * 15 14 13 17 17 C 1.40757 * 119.90053 * 0.02730 * 16 15 14 18 18 C 1.41404 * 120.20428 * 180.27802 * 17 16 15 19 19 H 1.08001 * 120.00077 * 331.82772 * 18 17 16 20 20 C 1.39925 * 120.00077 * 151.83942 * 18 17 16 21 21 N 1.30838 * 119.99877 * 347.53474 * 20 18 17 22 22 Si 1.86796 * 120.00391 * 167.53631 * 20 18 17 23 23 H 1.48493 * 109.47257 * 59.99878 * 22 20 18 24 24 H 1.48502 * 109.47385 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47099 * 299.99778 * 22 20 18 26 26 C 1.38299 * 119.95967 * 186.07309 * 13 12 11 27 27 C 1.38329 * 119.95772 * 0.25812 * 11 8 7 28 28 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47119 * 300.00226 * 1 2 3 30 30 H 1.09005 * 109.46840 * 60.00008 * 1 2 3 31 31 H 0.97006 * 119.99876 * 180.02562 * 2 1 3 32 32 H 1.08002 * 119.97213 * 359.97438 * 6 5 3 33 33 H 1.08005 * 119.91078 * 179.97438 * 7 6 5 34 34 H 1.09007 * 109.46576 * 299.99458 * 10 9 8 35 35 H 1.08999 * 109.47330 * 59.99838 * 10 9 8 36 36 H 1.08995 * 109.47266 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00102 * 251.43126 * 12 11 8 38 38 H 1.08002 * 119.78917 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.83570 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.05009 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00377 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.15788 * 0.02562 * 26 13 12 43 43 H 1.08008 * 120.08395 * 179.72613 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5311 2.2201 -0.0005 5 6 3.6151 1.1670 0.0006 6 6 4.3149 -0.0421 0.0006 7 6 5.6932 -0.0417 0.0016 8 6 6.3903 1.1582 0.0033 9 8 7.7483 1.1531 0.0048 10 6 8.3923 -0.1226 0.0041 11 6 5.6983 2.3704 0.0043 12 7 6.4038 3.5796 0.0065 13 6 7.0894 3.9904 -1.1392 14 6 6.9676 3.2626 -2.3214 15 6 7.6432 3.6606 -3.4626 16 6 8.4427 4.7815 -3.4419 17 6 8.5752 5.5270 -2.2553 18 6 9.3899 6.6824 -2.2284 19 1 10.2345 6.7634 -2.8966 20 6 9.1019 7.7209 -1.3359 21 7 7.9566 7.7414 -0.7037 22 14 10.3526 9.0779 -1.0468 23 1 10.6330 9.7738 -2.3283 24 1 9.8098 10.0504 -0.0646 25 1 11.6091 8.4887 -0.5182 26 6 7.8878 5.1189 -1.0989 27 6 4.3151 2.3761 0.0092 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.7755 -0.9778 0.0006 33 1 6.2321 -0.9777 0.0021 34 1 8.0962 -0.6794 0.8933 35 1 8.0983 -0.6775 -0.8868 36 1 9.4733 0.0161 0.0060 37 1 6.4165 4.1323 0.8036 38 1 6.3428 2.3820 -2.3474 39 1 7.5423 3.0893 -4.3736 40 1 8.9674 5.0882 -4.3347 41 1 7.7570 8.4610 -0.0847 42 1 7.9830 5.6838 -0.1832 43 1 3.7775 3.3129 0.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215317813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:16 Heat of formation + Delta-G solvation = -15.821400 kcal Electronic energy + Delta-G solvation = -26807.659020 eV Core-core repulsion = 23011.024138 eV Total energy + Delta-G solvation = -3796.634882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54463 -39.42995 -37.80608 -36.91701 -34.95492 -34.61454 -33.21595 -30.51924 -30.20662 -29.38567 -27.77471 -27.31142 -26.22253 -25.12056 -23.11316 -22.24968 -20.94241 -20.70972 -19.91451 -18.36345 -17.68827 -17.12186 -16.57168 -16.17190 -15.59482 -15.48543 -15.31052 -15.26061 -14.66039 -14.44306 -14.19686 -13.97704 -13.74513 -13.21485 -12.96191 -12.82573 -12.71574 -12.51367 -12.29803 -12.14900 -11.93848 -11.62936 -11.23339 -11.08367 -11.01179 -10.98847 -10.63261 -10.41374 -10.05797 -9.69512 -9.45184 -9.37930 -9.32779 -9.01085 -8.74771 -8.05600 -7.22639 -6.65159 -6.22543 -4.27458 0.93711 1.31673 2.84354 2.93607 3.05477 3.13118 3.16375 3.22623 3.34910 3.38461 3.84951 4.03025 4.13422 4.65612 4.71013 4.78499 4.89801 4.99812 5.05744 5.15199 5.26761 5.28553 5.49472 5.53860 5.60282 5.78936 5.84443 6.09758 6.13997 6.19022 6.30937 6.35219 6.62058 6.64994 6.91843 7.11859 7.19189 7.31113 7.37173 7.44058 7.47416 7.87180 7.99013 8.11560 8.13656 8.21497 8.52586 8.66982 8.86109 9.05106 9.13015 10.35055 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003128 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.455106 B = 8949.556252 C = 9829.770777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.564 3.436 4 O -0.537 6.537 5 C -0.174 4.174 6 C -0.058 4.058 7 C -0.216 4.216 8 C 0.152 3.848 9 O -0.286 6.286 10 C 0.025 3.975 11 C 0.141 3.859 12 N -0.703 5.703 13 C 0.213 3.787 14 C -0.276 4.276 15 C -0.071 4.071 16 C -0.250 4.250 17 C 0.137 3.863 18 C -0.466 4.466 19 H 0.075 0.925 20 C 0.076 3.924 21 N -0.800 5.800 22 Si 0.907 3.093 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.213 4.213 27 C -0.034 4.034 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.400 0.600 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.401 0.599 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.277 0.723 42 H 0.120 0.880 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -18.361 5.088 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.353 3.647 4 O -0.414 6.414 5 C -0.178 4.178 6 C -0.077 4.077 7 C -0.236 4.236 8 C 0.102 3.898 9 O -0.197 6.197 10 C -0.071 4.071 11 C 0.045 3.955 12 N -0.333 5.333 13 C 0.118 3.882 14 C -0.298 4.298 15 C -0.090 4.090 16 C -0.270 4.270 17 C 0.134 3.866 18 C -0.496 4.496 19 H 0.093 0.907 20 C -0.141 4.141 21 N -0.426 5.426 22 Si 0.732 3.268 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.190 1.190 26 C -0.236 4.236 27 C -0.055 4.055 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.755 -17.386 5.169 19.726 hybrid contribution 0.646 0.033 0.371 0.746 sum -7.108 -17.353 5.540 19.554 Atomic orbital electron populations 1.21521 0.79478 1.02033 1.02485 1.45692 1.07695 1.08647 1.76957 1.18238 0.87308 0.83530 0.75622 1.90790 1.70021 1.31143 1.49470 1.19524 0.92228 0.93992 1.12022 1.20880 0.93526 0.96530 0.96793 1.21016 0.94884 0.96922 1.10762 1.19876 0.83208 0.93668 0.93003 1.86306 1.15712 1.30758 1.86891 1.23102 0.98630 0.84528 1.00816 1.16732 0.89286 0.85099 1.04355 1.41729 1.56753 1.20178 1.14611 1.17584 0.92116 0.93832 0.84702 1.19839 1.12025 1.04316 0.93629 1.20261 0.96884 0.96214 0.95612 1.20912 1.07788 1.00733 0.97562 1.17304 0.89255 0.90596 0.89485 1.19485 1.12034 1.00392 1.17695 0.90722 1.25848 0.95053 0.99073 0.94107 1.69824 1.20158 1.30971 1.21687 0.86400 0.81407 0.80119 0.78882 1.19178 1.20507 1.19039 1.20767 1.05087 0.97734 1.00014 1.21419 0.92230 0.98216 0.93630 0.90757 0.92192 0.92142 0.76563 0.85827 0.84910 0.92947 0.92674 0.88142 0.76216 0.90065 0.89685 0.89318 0.91187 0.86264 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.70 59.85 0.64 1.33 16 2 N -0.74 -6.92 5.66 -68.12 -0.39 -7.31 16 3 C 0.56 7.83 7.76 -12.44 -0.10 7.74 16 4 O -0.54 -9.61 16.34 5.29 0.09 -9.52 16 5 C -0.17 -2.39 5.87 -104.97 -0.62 -3.01 16 6 C -0.06 -0.63 9.53 -39.18 -0.37 -1.00 16 7 C -0.22 -2.55 9.01 -39.54 -0.36 -2.90 16 8 C 0.15 2.36 5.90 -38.89 -0.23 2.13 16 9 O -0.29 -4.62 9.98 -19.12 -0.19 -4.81 16 10 C 0.02 0.26 9.81 101.05 0.99 1.25 16 11 C 0.14 2.47 4.71 -83.59 -0.39 2.07 16 12 N -0.70 -14.12 5.20 -8.37 -0.04 -14.16 16 13 C 0.21 5.09 6.32 -83.84 -0.53 4.56 16 14 C -0.28 -6.48 9.11 -39.08 -0.36 -6.84 16 15 C -0.07 -1.68 10.01 -39.70 -0.40 -2.08 16 16 C -0.25 -6.39 9.79 -38.83 -0.38 -6.77 16 17 C 0.14 3.75 5.55 -106.86 -0.59 3.16 16 18 C -0.47 -12.70 9.06 -37.75 -0.34 -13.04 16 19 H 0.07 1.96 7.88 -52.49 -0.41 1.54 16 20 C 0.08 1.95 5.22 -17.34 -0.09 1.86 16 21 N -0.80 -21.21 10.88 55.55 0.60 -20.60 16 22 Si 0.91 19.25 29.58 -169.99 -5.03 14.23 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.21 -5.62 8.50 -38.67 -0.33 -5.95 16 27 C -0.03 -0.56 9.51 -39.00 -0.37 -0.93 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 2.47 6.85 -40.82 -0.28 2.19 16 32 H 0.12 0.82 6.39 -52.49 -0.34 0.49 16 33 H 0.13 1.16 6.27 -52.48 -0.33 0.84 16 34 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 35 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 7.60 8.84 -40.82 -0.36 7.24 16 38 H 0.08 1.81 6.61 -52.49 -0.35 1.47 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 41 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 42 H 0.12 3.24 6.23 -52.48 -0.33 2.91 16 43 H 0.14 2.53 7.64 -52.48 -0.40 2.13 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -33.25 364.31 -8.55 -41.80 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.26 Total: 13.30 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.82 Total: -18.41 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.18 Total: -42.07 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.10 Total: -14.33 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -8.55 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215317813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.975 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds