Wall clock time and date at job start Tue Mar 31 2020 14:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00476 * 2 1 4 4 O 1.21581 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00037 * 179.97438 * 3 2 1 6 6 C 1.39710 * 120.06659 * 0.02562 * 5 3 2 7 7 C 1.37824 * 120.04193 * 180.02562 * 6 5 3 8 8 C 1.38772 * 120.17679 * 0.02562 * 7 6 5 9 9 O 1.35803 * 119.93813 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00167 * 0.02562 * 9 8 7 11 11 C 1.39575 * 120.12200 * 0.02562 * 8 7 6 12 12 N 1.40000 * 120.02037 * 179.97438 * 11 8 7 13 13 C 1.39691 * 120.00198 * 71.42970 * 12 11 8 14 14 C 1.39362 * 119.95123 * 6.09789 * 13 12 11 15 15 C 1.38469 * 120.42233 * 180.02562 * 14 13 12 16 16 C 1.37693 * 120.32555 * 359.94994 * 15 14 13 17 17 C 1.40757 * 119.90053 * 0.02730 * 16 15 14 18 18 C 1.41404 * 120.20428 * 180.27802 * 17 16 15 19 19 H 1.08001 * 120.00077 * 331.82772 * 18 17 16 20 20 C 1.39925 * 120.00077 * 151.83942 * 18 17 16 21 21 N 1.30838 * 119.99877 * 347.53474 * 20 18 17 22 22 Si 1.86796 * 120.00391 * 167.53631 * 20 18 17 23 23 H 1.48493 * 109.47257 * 59.99878 * 22 20 18 24 24 H 1.48502 * 109.47385 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47099 * 299.99778 * 22 20 18 26 26 C 1.38299 * 119.95967 * 186.07309 * 13 12 11 27 27 C 1.38329 * 119.95772 * 0.25812 * 11 8 7 28 28 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47119 * 300.00226 * 1 2 3 30 30 H 1.09005 * 109.46840 * 60.00008 * 1 2 3 31 31 H 0.97006 * 119.99876 * 180.02562 * 2 1 3 32 32 H 1.08002 * 119.97213 * 359.97438 * 6 5 3 33 33 H 1.08005 * 119.91078 * 179.97438 * 7 6 5 34 34 H 1.09007 * 109.46576 * 299.99458 * 10 9 8 35 35 H 1.08999 * 109.47330 * 59.99838 * 10 9 8 36 36 H 1.08995 * 109.47266 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00102 * 251.43126 * 12 11 8 38 38 H 1.08002 * 119.78917 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.83570 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.05009 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00377 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.15788 * 0.02562 * 26 13 12 43 43 H 1.08008 * 120.08395 * 179.72613 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5311 2.2201 -0.0005 5 6 3.6151 1.1670 0.0006 6 6 4.3149 -0.0421 0.0006 7 6 5.6932 -0.0417 0.0016 8 6 6.3903 1.1582 0.0033 9 8 7.7483 1.1531 0.0048 10 6 8.3923 -0.1226 0.0041 11 6 5.6983 2.3704 0.0043 12 7 6.4038 3.5796 0.0065 13 6 7.0894 3.9904 -1.1392 14 6 6.9676 3.2626 -2.3214 15 6 7.6432 3.6606 -3.4626 16 6 8.4427 4.7815 -3.4419 17 6 8.5752 5.5270 -2.2553 18 6 9.3899 6.6824 -2.2284 19 1 10.2345 6.7634 -2.8966 20 6 9.1019 7.7209 -1.3359 21 7 7.9566 7.7414 -0.7037 22 14 10.3526 9.0779 -1.0468 23 1 10.6330 9.7738 -2.3283 24 1 9.8098 10.0504 -0.0646 25 1 11.6091 8.4887 -0.5182 26 6 7.8878 5.1189 -1.0989 27 6 4.3151 2.3761 0.0092 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.7755 -0.9778 0.0006 33 1 6.2321 -0.9777 0.0021 34 1 8.0962 -0.6794 0.8933 35 1 8.0983 -0.6775 -0.8868 36 1 9.4733 0.0161 0.0060 37 1 6.4165 4.1323 0.8036 38 1 6.3428 2.3820 -2.3474 39 1 7.5423 3.0893 -4.3736 40 1 8.9674 5.0882 -4.3347 41 1 7.7570 8.4610 -0.0847 42 1 7.9830 5.6838 -0.1832 43 1 3.7775 3.3129 0.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215317813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:15 Heat of formation + Delta-G solvation = -38.200245 kcal Electronic energy + Delta-G solvation = -26808.629439 eV Core-core repulsion = 23011.024138 eV Total energy + Delta-G solvation = -3797.605301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66907 -40.52497 -39.49568 -38.15930 -36.42575 -35.69448 -35.06888 -31.67224 -31.52170 -31.34795 -28.86902 -28.60387 -27.18041 -27.07188 -24.17879 -23.48198 -22.79596 -22.12220 -21.28284 -19.65656 -18.87462 -18.65634 -17.84790 -17.60800 -16.92626 -16.69663 -16.48025 -16.30565 -16.25767 -16.21065 -15.30045 -15.07972 -14.84712 -14.62610 -14.53855 -14.10676 -14.00893 -13.85829 -13.55580 -13.30387 -13.15005 -12.99358 -12.83685 -12.75406 -12.56952 -12.21476 -12.02323 -11.97328 -11.59987 -11.36614 -11.28086 -11.10203 -10.77065 -10.21052 -9.97366 -9.23346 -9.19969 -8.58195 -8.01796 -6.33145 -0.15116 0.21219 1.08997 1.30362 1.38491 1.50362 1.58019 1.77753 2.18472 2.24002 2.34269 2.67760 2.79729 2.85445 3.75818 3.79340 3.85477 3.91411 4.16229 4.31165 4.41910 4.44133 4.47514 4.54428 4.64108 4.69715 4.73144 4.76647 4.96091 4.98316 5.08329 5.11553 5.20191 5.22419 5.28409 5.37703 5.43576 5.50893 5.64404 5.94000 6.07882 6.20100 6.22456 6.42205 6.52477 6.58854 6.88866 7.04633 7.05647 7.17405 7.20298 8.42515 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003128 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.455106 B = 8949.556252 C = 9829.770777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.559 3.441 4 O -0.590 6.590 5 C -0.181 4.181 6 C -0.030 4.030 7 C -0.203 4.203 8 C 0.145 3.855 9 O -0.324 6.324 10 C 0.014 3.986 11 C 0.101 3.899 12 N -0.701 5.701 13 C 0.224 3.776 14 C -0.277 4.277 15 C -0.067 4.067 16 C -0.274 4.274 17 C 0.108 3.892 18 C -0.502 4.502 19 H 0.074 0.926 20 C 0.033 3.967 21 N -0.831 5.831 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.242 4.242 27 C -0.048 4.048 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.283 0.717 42 H 0.101 0.899 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 -22.214 5.254 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.348 3.652 4 O -0.472 6.472 5 C -0.185 4.185 6 C -0.048 4.048 7 C -0.221 4.221 8 C 0.095 3.905 9 O -0.236 6.236 10 C -0.080 4.080 11 C 0.007 3.993 12 N -0.329 5.329 13 C 0.125 3.875 14 C -0.300 4.300 15 C -0.085 4.085 16 C -0.295 4.295 17 C 0.105 3.895 18 C -0.533 4.533 19 H 0.092 0.908 20 C -0.181 4.181 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.266 4.266 27 C -0.070 4.070 28 H 0.138 0.862 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.258 0.742 32 H 0.196 0.804 33 H 0.193 0.807 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.219 -21.343 5.347 23.487 hybrid contribution 0.645 0.992 0.365 1.238 sum -7.574 -20.351 5.712 22.453 Atomic orbital electron populations 1.21727 0.78200 1.04653 1.01446 1.45557 1.08527 1.08011 1.74611 1.18364 0.87409 0.84057 0.75378 1.90770 1.70875 1.33302 1.52215 1.19619 0.92430 0.94174 1.12275 1.21406 0.93327 0.97175 0.92912 1.21455 0.95248 0.96930 1.08513 1.19949 0.83426 0.93998 0.93098 1.86250 1.16192 1.34135 1.87002 1.23431 0.98635 0.82971 1.02961 1.16931 0.89567 0.84808 1.07981 1.41667 1.56317 1.21497 1.13445 1.17671 0.90921 0.92716 0.86166 1.20031 1.11959 1.04654 0.93328 1.20604 0.95485 0.95542 0.96894 1.21067 1.09237 1.01843 0.97342 1.17696 0.89952 0.91377 0.90503 1.19761 1.12727 1.01480 1.19296 0.90803 1.26737 0.96856 1.01298 0.93205 1.69913 1.21787 1.31996 1.22073 0.85253 0.78519 0.76810 0.79053 1.18451 1.19424 1.18461 1.20675 1.07344 0.99215 0.99357 1.21245 0.92020 0.98623 0.95069 0.86227 0.93153 0.93406 0.74237 0.80402 0.80746 0.90139 0.90923 0.87810 0.76477 0.88551 0.86418 0.88764 0.90633 0.88126 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.70 127.77 1.37 2.43 16 2 N -0.71 -11.00 5.66 -487.71 -2.76 -13.77 16 3 C 0.56 14.83 7.76 86.72 0.67 15.50 16 4 O -0.59 -21.68 16.34 -3.97 -0.06 -21.74 16 5 C -0.18 -4.68 5.87 -20.09 -0.12 -4.80 16 6 C -0.03 -0.50 9.53 22.53 0.21 -0.28 16 7 C -0.20 -3.85 9.01 22.30 0.20 -3.65 16 8 C 0.14 4.25 5.90 22.72 0.13 4.38 16 9 O -0.32 -10.09 9.98 -91.35 -0.91 -11.00 16 10 C 0.01 0.26 9.81 113.37 1.11 1.37 16 11 C 0.10 3.61 4.71 38.18 0.18 3.79 16 12 N -0.70 -29.75 5.20 -180.40 -0.94 -30.69 16 13 C 0.22 11.13 6.32 38.17 0.24 11.37 16 14 C -0.28 -13.17 9.11 22.60 0.21 -12.97 16 15 C -0.07 -3.16 10.01 22.20 0.22 -2.94 16 16 C -0.27 -14.51 9.79 22.76 0.22 -14.28 16 17 C 0.11 6.22 5.55 -21.31 -0.12 6.10 16 18 C -0.50 -28.73 9.06 23.46 0.21 -28.51 16 19 H 0.07 4.05 7.88 -2.91 -0.02 4.03 16 20 C 0.03 1.74 5.22 85.25 0.45 2.18 16 21 N -0.83 -46.15 10.88 21.82 0.24 -45.91 16 22 Si 0.98 40.47 29.58 68.60 2.03 42.50 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 C -0.24 -13.58 8.50 22.86 0.19 -13.39 16 27 C -0.05 -1.64 9.51 22.65 0.22 -1.42 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.42 2.90 6.85 -92.70 -0.63 2.27 16 32 H 0.18 1.03 6.39 -2.91 -0.02 1.01 16 33 H 0.18 1.89 6.27 -2.91 -0.02 1.87 16 34 H 0.08 1.00 7.65 -2.38 -0.02 0.99 16 35 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.40 16.48 8.84 -92.71 -0.82 15.66 16 38 H 0.10 4.25 6.61 -2.91 -0.02 4.23 16 39 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.28 14.36 8.30 -92.71 -0.77 13.60 16 42 H 0.10 5.90 6.23 -2.91 -0.02 5.88 16 43 H 0.11 4.44 7.64 -2.91 -0.02 4.42 16 Total: -1.00 -79.66 364.31 2.81 -76.84 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.38 Total: 38.90 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 5.61 Total: -35.14 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.46 Total: -90.37 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.98 Total: -32.74 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -79.66 2.81 -76.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215317813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.645 kcal (2) G-P(sol) polarization free energy of solvation -79.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds