Wall clock time and date at job start Tue Mar 31 2020 14:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00236 * 2 1 4 4 O 1.21602 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.47551 * 120.00256 * 180.02562 * 3 2 1 6 6 C 1.39763 * 120.04571 * 359.97438 * 5 3 2 7 7 C 1.37686 * 120.03134 * 180.02562 * 6 5 3 8 8 C 1.39110 * 120.12597 * 359.74535 * 7 6 5 9 9 N 1.39210 * 119.95523 * 180.25275 * 8 7 6 10 10 C 1.38795 * 120.00304 * 254.44078 * 9 8 7 11 11 C 1.39617 * 119.84097 * 7.40315 * 10 9 8 12 12 C 1.36315 * 120.15391 * 179.71997 * 11 10 9 13 13 C 1.40903 * 119.84055 * 0.57570 * 12 11 10 14 14 C 1.41094 * 120.15623 * 179.67807 * 13 12 11 15 15 H 1.08004 * 119.99659 * 25.32399 * 14 13 12 16 16 C 1.39848 * 120.00479 * 205.33010 * 14 13 12 17 17 N 1.30913 * 119.99955 * 16.92474 * 16 14 13 18 18 Si 1.86805 * 120.00087 * 196.93387 * 16 14 13 19 19 H 1.48494 * 109.47288 * 89.99530 * 18 16 14 20 20 H 1.48503 * 109.46897 * 209.99226 * 18 16 14 21 21 H 1.48498 * 109.46882 * 329.99480 * 18 16 14 22 22 C 1.40908 * 119.69270 * 359.69959 * 13 12 11 23 23 C 1.36306 * 119.84453 * 359.97438 * 22 13 12 24 24 C 1.39664 * 120.09060 * 0.50988 * 8 7 6 25 25 O 1.35989 * 120.01390 * 179.77053 * 24 8 7 26 26 C 1.42901 * 116.99720 * 179.72132 * 25 24 8 27 27 C 1.38054 * 119.96889 * 359.48825 * 24 8 7 28 28 H 1.08997 * 109.47271 * 59.99721 * 1 2 3 29 29 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46545 * 299.99628 * 1 2 3 31 31 H 0.97004 * 120.00024 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.98496 * 0.04231 * 6 5 3 33 33 H 1.08002 * 119.93857 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00190 * 74.43976 * 9 8 7 35 35 H 1.07995 * 119.91993 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.07455 * 180.27523 * 12 11 10 37 37 H 0.96992 * 119.99848 * 180.02562 * 17 16 14 38 38 H 1.08003 * 120.07940 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.92788 * 180.02562 * 23 22 13 40 40 H 1.09007 * 109.46855 * 180.02562 * 26 25 24 41 41 H 1.08996 * 109.47339 * 60.00373 * 26 25 24 42 42 H 1.09001 * 109.46945 * 299.99518 * 26 25 24 43 43 H 1.08007 * 120.06401 * 180.23778 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5310 2.2203 0.0005 5 6 3.6145 1.1671 -0.0006 6 6 4.3142 -0.0427 -0.0006 7 6 5.6911 -0.0423 -0.0006 8 6 6.3890 1.1610 -0.0059 9 7 7.7811 1.1572 -0.0112 10 6 8.4804 1.4803 1.1433 11 6 7.7928 1.6570 2.3455 12 6 8.4739 1.9688 3.4844 13 6 9.8737 2.1246 3.4439 14 6 10.5845 2.4540 4.6173 15 1 10.1783 2.1976 5.5846 16 6 11.8150 3.1126 4.5280 17 7 12.1560 3.7146 3.4166 18 14 12.9721 3.1331 5.9944 19 1 13.8774 1.9580 5.9271 20 1 13.7776 4.3805 5.9718 21 1 12.1810 3.0773 7.2499 22 6 10.5604 1.9505 2.2258 23 6 9.8674 1.6323 1.0960 24 6 5.6950 2.3730 -0.0006 25 8 6.3788 3.5485 -0.0011 26 6 5.6044 4.7495 -0.0016 27 6 4.3144 2.3772 -0.0006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.9501 -0.8401 -0.0004 32 1 3.7748 -0.9783 -0.0008 33 1 6.2303 -0.9781 -0.0002 34 1 8.2624 0.9287 -0.8218 35 1 6.7194 1.5424 2.3740 36 1 7.9412 2.1009 4.4146 37 1 13.0095 4.1711 3.3546 38 1 11.6332 2.0688 2.1875 39 1 10.3924 1.4980 0.1618 40 1 6.2713 5.6117 -0.0024 41 1 4.9758 4.7768 0.8884 42 1 4.9757 4.7760 -0.8916 43 1 3.7762 3.3136 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215628439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:33 Heat of formation + Delta-G solvation = -12.758110 kcal Electronic energy + Delta-G solvation = -26622.832269 eV Core-core repulsion = 22826.330221 eV Total energy + Delta-G solvation = -3796.502048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58214 -39.41416 -37.93297 -36.99782 -34.99564 -34.84452 -33.02977 -30.50003 -30.17308 -29.31931 -28.40454 -27.60468 -26.37234 -24.61051 -23.00271 -22.11084 -21.03951 -20.68164 -20.18892 -18.74549 -17.23185 -16.72336 -16.66511 -16.40286 -16.17106 -15.55500 -15.44561 -15.25593 -15.06638 -14.18621 -14.07778 -13.86926 -13.70909 -13.27559 -13.05099 -12.75064 -12.66509 -12.44742 -12.26134 -11.99060 -11.95568 -11.63780 -11.43807 -11.22748 -11.05759 -10.97114 -10.87080 -10.54981 -10.13703 -9.69809 -9.44402 -9.38086 -9.32469 -8.93799 -8.65997 -8.03736 -7.49246 -6.67271 -6.46384 -4.07743 0.77344 1.42509 2.75944 2.90397 2.97286 3.11284 3.14550 3.17760 3.32739 3.45580 3.81572 4.03672 4.12308 4.57970 4.73437 4.83435 4.92366 5.00388 5.12438 5.21182 5.30023 5.33812 5.48732 5.55954 5.66168 5.75171 5.80934 6.05577 6.10600 6.19427 6.27569 6.30206 6.35704 6.62964 6.88420 7.04404 7.18298 7.22909 7.29233 7.46686 7.59751 7.67333 7.81281 8.01118 8.13299 8.31885 8.47932 8.59446 8.75488 9.03713 9.11994 10.35141 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.002631 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.011053 B =10639.697217 C =10748.282650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.562 3.438 4 O -0.540 6.540 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.107 4.107 8 C 0.181 3.819 9 N -0.703 5.703 10 C 0.084 3.916 11 C -0.137 4.137 12 C -0.192 4.192 13 C 0.082 3.918 14 C -0.465 4.465 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.805 5.805 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.128 4.128 23 C -0.150 4.150 24 C 0.112 3.888 25 O -0.289 6.289 26 C 0.024 3.976 27 C -0.146 4.146 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.403 0.597 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.397 0.603 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.277 0.723 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -6.928 -9.045 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.351 3.649 4 O -0.418 6.418 5 C -0.124 4.124 6 C -0.133 4.133 7 C -0.128 4.128 8 C 0.085 3.915 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.159 4.159 12 C -0.212 4.212 13 C 0.079 3.921 14 C -0.496 4.496 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.432 5.432 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.148 4.148 23 C -0.171 4.171 24 C 0.063 3.937 25 O -0.201 6.201 26 C -0.071 4.071 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.363 -5.938 -9.026 18.781 hybrid contribution 0.630 -0.189 0.369 0.754 sum -14.733 -6.127 -8.657 18.154 Atomic orbital electron populations 1.21541 0.79371 1.02229 1.02435 1.45704 1.07791 1.08757 1.76351 1.18281 0.87390 0.83578 0.75659 1.90767 1.70134 1.31229 1.49714 1.19496 0.92000 0.93893 1.06999 1.20940 0.94070 0.96386 1.01926 1.21261 0.93526 0.97589 1.00403 1.17033 0.85244 0.89341 0.99927 1.41030 1.00477 1.79859 1.12112 1.17225 0.90671 1.08039 0.85121 1.19825 0.96762 1.06979 0.92321 1.20539 0.94247 1.10182 0.96218 1.17515 0.90554 0.90718 0.93283 1.19393 1.02661 1.33600 0.93913 0.90874 1.25813 0.98235 0.93197 0.96900 1.69856 1.21357 1.24916 1.27101 0.86381 0.80265 0.78196 0.82206 1.19506 1.20553 1.18847 1.20900 0.99674 1.02065 0.92162 1.20023 0.91675 1.07384 0.98055 1.19591 0.89907 0.87053 0.97129 1.86321 1.34217 1.11718 1.87870 1.23093 0.97202 0.85830 1.00982 1.21186 0.92378 0.98860 1.04160 0.92180 0.90586 0.92111 0.76240 0.85786 0.84557 0.76750 0.89882 0.89141 0.91258 0.86234 0.89364 0.88127 0.92660 0.92998 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 59.85 0.64 1.26 16 2 N -0.73 -6.47 5.66 -68.14 -0.39 -6.86 16 3 C 0.56 7.25 7.76 -12.46 -0.10 7.15 16 4 O -0.54 -8.79 16.34 5.28 0.09 -8.70 16 5 C -0.12 -1.57 5.88 -104.95 -0.62 -2.19 16 6 C -0.11 -1.25 9.52 -39.21 -0.37 -1.62 16 7 C -0.11 -1.38 9.95 -39.46 -0.39 -1.77 16 8 C 0.18 2.89 4.55 -83.65 -0.38 2.51 16 9 N -0.70 -12.34 5.10 -8.20 -0.04 -12.39 16 10 C 0.08 1.82 6.44 -83.68 -0.54 1.28 16 11 C -0.14 -3.16 9.08 -39.76 -0.36 -3.52 16 12 C -0.19 -4.81 9.74 -39.27 -0.38 -5.20 16 13 C 0.08 2.22 5.57 -106.80 -0.59 1.62 16 14 C -0.46 -12.59 9.03 -37.90 -0.34 -12.93 16 15 H 0.07 1.92 7.90 -52.48 -0.41 1.51 16 16 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 17 N -0.81 -21.29 10.95 55.54 0.61 -20.68 16 18 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.13 -3.33 8.63 -39.27 -0.34 -3.67 16 23 C -0.15 -3.46 9.83 -39.76 -0.39 -3.85 16 24 C 0.11 1.82 6.15 -39.12 -0.24 1.58 16 25 O -0.29 -5.04 10.09 -19.71 -0.20 -5.23 16 26 C 0.02 0.32 9.81 101.05 0.99 1.31 16 27 C -0.15 -2.13 8.57 -39.07 -0.33 -2.47 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.40 2.41 6.84 -40.82 -0.28 2.13 16 32 H 0.12 0.89 6.38 -52.49 -0.34 0.55 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.40 6.10 8.83 -40.82 -0.36 5.74 16 35 H 0.08 1.81 6.75 -52.49 -0.35 1.46 16 36 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 41 H 0.05 0.69 7.66 -51.93 -0.40 0.30 16 42 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.14 1.99 5.87 -52.48 -0.31 1.68 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -32.40 364.51 -8.58 -40.97 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.26 Total: 11.94 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.84 Total: -18.69 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.18 Total: -39.92 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.11 Total: -13.94 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.40 -8.58 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215628439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.216 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds