Wall clock time and date at job start Tue Mar 31 2020 14:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00236 * 2 1 4 4 O 1.21602 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.47551 * 120.00256 * 180.02562 * 3 2 1 6 6 C 1.39763 * 120.04571 * 359.97438 * 5 3 2 7 7 C 1.37686 * 120.03134 * 180.02562 * 6 5 3 8 8 C 1.39110 * 120.12597 * 359.74535 * 7 6 5 9 9 N 1.39210 * 119.95523 * 180.25275 * 8 7 6 10 10 C 1.38795 * 120.00304 * 254.44078 * 9 8 7 11 11 C 1.39617 * 119.84097 * 7.40315 * 10 9 8 12 12 C 1.36315 * 120.15391 * 179.71997 * 11 10 9 13 13 C 1.40903 * 119.84055 * 0.57570 * 12 11 10 14 14 C 1.41094 * 120.15623 * 179.67807 * 13 12 11 15 15 H 1.08004 * 119.99659 * 25.32399 * 14 13 12 16 16 C 1.39848 * 120.00479 * 205.33010 * 14 13 12 17 17 N 1.30913 * 119.99955 * 16.92474 * 16 14 13 18 18 Si 1.86805 * 120.00087 * 196.93387 * 16 14 13 19 19 H 1.48494 * 109.47288 * 89.99530 * 18 16 14 20 20 H 1.48503 * 109.46897 * 209.99226 * 18 16 14 21 21 H 1.48498 * 109.46882 * 329.99480 * 18 16 14 22 22 C 1.40908 * 119.69270 * 359.69959 * 13 12 11 23 23 C 1.36306 * 119.84453 * 359.97438 * 22 13 12 24 24 C 1.39664 * 120.09060 * 0.50988 * 8 7 6 25 25 O 1.35989 * 120.01390 * 179.77053 * 24 8 7 26 26 C 1.42901 * 116.99720 * 179.72132 * 25 24 8 27 27 C 1.38054 * 119.96889 * 359.48825 * 24 8 7 28 28 H 1.08997 * 109.47271 * 59.99721 * 1 2 3 29 29 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46545 * 299.99628 * 1 2 3 31 31 H 0.97004 * 120.00024 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.98496 * 0.04231 * 6 5 3 33 33 H 1.08002 * 119.93857 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00190 * 74.43976 * 9 8 7 35 35 H 1.07995 * 119.91993 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.07455 * 180.27523 * 12 11 10 37 37 H 0.96992 * 119.99848 * 180.02562 * 17 16 14 38 38 H 1.08003 * 120.07940 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.92788 * 180.02562 * 23 22 13 40 40 H 1.09007 * 109.46855 * 180.02562 * 26 25 24 41 41 H 1.08996 * 109.47339 * 60.00373 * 26 25 24 42 42 H 1.09001 * 109.46945 * 299.99518 * 26 25 24 43 43 H 1.08007 * 120.06401 * 180.23778 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5310 2.2203 0.0005 5 6 3.6145 1.1671 -0.0006 6 6 4.3142 -0.0427 -0.0006 7 6 5.6911 -0.0423 -0.0006 8 6 6.3890 1.1610 -0.0059 9 7 7.7811 1.1572 -0.0112 10 6 8.4804 1.4803 1.1433 11 6 7.7928 1.6570 2.3455 12 6 8.4739 1.9688 3.4844 13 6 9.8737 2.1246 3.4439 14 6 10.5845 2.4540 4.6173 15 1 10.1783 2.1976 5.5846 16 6 11.8150 3.1126 4.5280 17 7 12.1560 3.7146 3.4166 18 14 12.9721 3.1331 5.9944 19 1 13.8774 1.9580 5.9271 20 1 13.7776 4.3805 5.9718 21 1 12.1810 3.0773 7.2499 22 6 10.5604 1.9505 2.2258 23 6 9.8674 1.6323 1.0960 24 6 5.6950 2.3730 -0.0006 25 8 6.3788 3.5485 -0.0011 26 6 5.6044 4.7495 -0.0016 27 6 4.3144 2.3772 -0.0006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.9501 -0.8401 -0.0004 32 1 3.7748 -0.9783 -0.0008 33 1 6.2303 -0.9781 -0.0002 34 1 8.2624 0.9287 -0.8218 35 1 6.7194 1.5424 2.3740 36 1 7.9412 2.1009 4.4146 37 1 13.0095 4.1711 3.3546 38 1 11.6332 2.0688 2.1875 39 1 10.3924 1.4980 0.1618 40 1 6.2713 5.6117 -0.0024 41 1 4.9758 4.7768 0.8884 42 1 4.9757 4.7760 -0.8916 43 1 3.7762 3.3136 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215628439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:33 Heat of formation + Delta-G solvation = -33.683151 kcal Electronic energy + Delta-G solvation = -26623.739646 eV Core-core repulsion = 22826.330221 eV Total energy + Delta-G solvation = -3797.409426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69062 -40.50862 -39.58230 -38.25340 -36.53424 -35.72809 -34.79264 -31.95875 -31.33559 -31.04131 -30.00374 -28.60839 -27.38145 -26.27326 -24.25687 -23.21418 -22.71226 -22.23096 -21.48660 -19.75776 -19.15132 -18.05493 -17.91110 -17.64724 -17.36644 -16.89234 -16.63318 -16.49545 -16.21757 -15.68692 -15.25702 -15.08278 -14.84321 -14.63761 -14.54481 -14.04275 -13.90932 -13.75972 -13.54652 -13.49951 -13.19310 -13.10433 -12.81479 -12.75358 -12.55753 -12.43930 -12.24195 -12.04428 -11.57341 -11.23543 -11.16854 -11.15763 -10.58156 -10.24456 -9.88501 -9.40339 -9.22208 -8.55875 -8.23234 -6.04504 -0.31682 0.37402 1.09056 1.19455 1.40665 1.53225 1.57540 1.75070 2.15933 2.27397 2.36305 2.68978 2.83746 2.86872 3.69194 3.79601 3.87021 4.02422 4.09970 4.27294 4.29749 4.41222 4.46240 4.47644 4.52275 4.63733 4.64557 4.72876 4.94059 4.99377 5.06219 5.17729 5.19650 5.26383 5.30000 5.35093 5.41301 5.60031 5.73377 5.79488 5.92761 6.17436 6.33108 6.41934 6.47553 6.67742 6.87959 7.07384 7.12858 7.14105 7.23104 8.47593 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.002631 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.011053 B =10639.697217 C =10748.282650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.558 3.442 4 O -0.583 6.583 5 C -0.121 4.121 6 C -0.094 4.094 7 C -0.098 4.098 8 C 0.148 3.852 9 N -0.694 5.694 10 C 0.113 3.887 11 C -0.143 4.143 12 C -0.202 4.202 13 C 0.045 3.955 14 C -0.503 4.503 15 H 0.067 0.933 16 C 0.032 3.968 17 N -0.839 5.839 18 Si 0.978 3.022 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.144 4.144 23 C -0.160 4.160 24 C 0.095 3.905 25 O -0.323 6.323 26 C 0.020 3.980 27 C -0.155 4.155 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.419 0.581 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.408 0.592 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.283 0.717 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.786 -9.237 -9.842 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.346 3.654 4 O -0.464 6.464 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.053 3.947 9 N -0.326 5.326 10 C 0.017 3.983 11 C -0.165 4.165 12 C -0.222 4.222 13 C 0.042 3.958 14 C -0.535 4.535 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.467 5.467 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.164 4.164 23 C -0.182 4.182 24 C 0.047 3.953 25 O -0.236 6.236 26 C -0.074 4.074 27 C -0.176 4.176 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.069 0.931 31 H 0.257 0.743 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.245 0.755 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.989 -8.307 -9.867 21.330 hybrid contribution 0.828 0.440 0.433 1.033 sum -16.161 -7.867 -9.433 20.299 Atomic orbital electron populations 1.21750 0.78005 1.04684 1.01638 1.45630 1.08704 1.08191 1.74110 1.18334 0.87300 0.84140 0.75636 1.90754 1.70739 1.32954 1.51951 1.19719 0.92455 0.94148 1.06077 1.21359 0.93431 0.97412 0.99072 1.21511 0.94295 0.97161 0.98768 1.17375 0.84326 0.90462 1.02565 1.40895 1.01450 1.79075 1.11139 1.17249 0.90381 1.04503 0.86208 1.19909 0.97327 1.07139 0.92161 1.20682 0.93932 1.10467 0.97161 1.17805 0.91527 0.92475 0.93976 1.19589 1.04446 1.35609 0.93811 0.91486 1.26620 0.99252 0.92214 0.99933 1.69916 1.22073 1.25655 1.29081 0.85272 0.77879 0.78578 0.78323 1.18718 1.19567 1.18614 1.20853 0.99141 1.03340 0.93057 1.20231 0.92517 1.07240 0.98183 1.19727 0.90477 0.86880 0.98210 1.86243 1.36044 1.13001 1.88352 1.23255 0.97443 0.84898 1.01820 1.21227 0.91915 0.99725 1.04694 0.92830 0.86498 0.93138 0.74263 0.81020 0.82278 0.75473 0.88632 0.89150 0.90668 0.87893 0.86958 0.87276 0.92683 0.91283 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.70 127.77 1.37 2.27 16 2 N -0.71 -9.99 5.66 -487.74 -2.76 -12.75 16 3 C 0.56 13.13 7.76 86.70 0.67 13.80 16 4 O -0.58 -18.51 16.34 -4.04 -0.07 -18.58 16 5 C -0.12 -2.85 5.88 -20.08 -0.12 -2.96 16 6 C -0.09 -1.66 9.52 22.51 0.21 -1.44 16 7 C -0.10 -2.15 9.95 22.35 0.22 -1.93 16 8 C 0.15 4.45 4.55 38.52 0.18 4.63 16 9 N -0.69 -23.28 5.10 -179.85 -0.92 -24.20 16 10 C 0.11 4.86 6.44 38.71 0.25 5.11 16 11 C -0.14 -6.61 9.08 22.15 0.20 -6.41 16 12 C -0.20 -10.46 9.74 22.47 0.22 -10.24 16 13 C 0.04 2.52 5.57 -21.27 -0.12 2.40 16 14 C -0.50 -28.46 9.03 23.36 0.21 -28.25 16 15 H 0.07 3.69 7.90 -2.91 -0.02 3.67 16 16 C 0.03 1.69 5.15 85.22 0.44 2.13 16 17 N -0.84 -45.84 10.95 21.81 0.24 -45.60 16 18 Si 0.98 40.16 29.59 68.60 2.03 42.19 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 C -0.14 -7.73 8.63 22.47 0.19 -7.53 16 23 C -0.16 -7.41 9.83 22.15 0.22 -7.20 16 24 C 0.09 3.02 6.15 22.57 0.14 3.16 16 25 O -0.32 -11.32 10.09 -93.42 -0.94 -12.27 16 26 C 0.02 0.54 9.81 113.37 1.11 1.65 16 27 C -0.16 -4.42 8.57 22.60 0.19 -4.23 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.42 2.87 6.84 -92.71 -0.63 2.24 16 32 H 0.17 1.36 6.38 -2.91 -0.02 1.34 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.41 11.77 8.83 -92.71 -0.82 10.95 16 35 H 0.10 4.12 6.75 -2.91 -0.02 4.10 16 36 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 38 H 0.10 5.79 6.17 -2.91 -0.02 5.77 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.05 1.42 7.66 -2.39 -0.02 1.40 16 42 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 43 H 0.13 3.87 5.87 -2.91 -0.02 3.86 16 Total: -1.00 -74.25 364.51 2.79 -71.46 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.38 Total: 34.78 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 5.59 Total: -35.04 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.44 Total: -82.55 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.01 Total: -30.84 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -74.25 2.79 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215628439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.782 kcal (2) G-P(sol) polarization free energy of solvation -74.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds