Wall clock time and date at job start Tue Mar 31 2020 14:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00165 * 2 1 4 4 N 1.46493 * 109.47451 * 79.99984 * 3 2 1 5 5 C 1.34779 * 120.00082 * 94.99980 * 4 3 2 6 6 O 1.21548 * 120.00375 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.39631 * 120.10814 * 359.72461 * 7 5 4 9 9 C 1.38000 * 120.01627 * 179.79476 * 8 7 5 10 10 C 1.38228 * 120.23360 * 0.45942 * 9 8 7 11 11 C 1.39042 * 120.21043 * 359.79170 * 10 9 8 12 12 N 1.39621 * 120.00665 * 179.97438 * 11 10 9 13 13 C 1.38687 * 120.00321 * 7.40094 * 12 11 10 14 14 C 1.38806 * 120.29710 * 258.03019 * 13 12 11 15 15 C 1.38115 * 120.02442 * 179.97438 * 14 13 12 16 16 C 1.38933 * 120.63265 * 359.97438 * 15 14 13 17 17 C 1.36431 * 120.60298 * 359.97438 * 16 15 14 18 18 C 1.40743 * 119.95380 * 359.76701 * 17 16 15 19 19 C 1.41004 * 120.30804 * 180.23326 * 18 17 16 20 20 H 1.08005 * 119.99898 * 204.93299 * 19 18 17 21 21 C 1.39910 * 120.00473 * 24.93264 * 19 18 17 22 22 N 1.30895 * 119.99491 * 18.54469 * 21 19 18 23 23 Si 1.86796 * 120.00717 * 198.54869 * 21 19 18 24 24 H 1.48504 * 109.47338 * 89.99758 * 23 21 19 25 25 H 1.48493 * 109.47370 * 210.00326 * 23 21 19 26 26 H 1.48510 * 109.46840 * 330.00031 * 23 21 19 27 27 C 1.38743 * 119.98562 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.47248 * 300.00224 * 1 2 3 29 29 H 1.09004 * 109.47055 * 59.99981 * 1 2 3 30 30 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47200 * 200.00410 * 3 2 1 32 32 H 1.09005 * 109.47155 * 319.99900 * 3 2 1 33 33 H 0.97006 * 120.00379 * 275.00435 * 4 3 2 34 34 H 1.07997 * 119.99014 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.88270 * 180.23329 * 9 8 7 36 36 H 1.07998 * 119.89668 * 179.77190 * 10 9 8 37 37 H 0.97006 * 120.00080 * 187.39624 * 12 11 10 38 38 H 1.08007 * 119.99001 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.68526 * 179.97438 * 15 14 13 40 40 H 1.07990 * 119.69654 * 179.97438 * 16 15 14 41 41 H 1.07994 * 120.01843 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99497 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.11593 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 1.9898 1.8491 1.3601 5 6 3.0709 1.7187 2.1544 6 8 4.0630 1.1503 1.7420 7 6 3.0500 2.2670 3.5274 8 6 1.9135 2.9254 4.0015 9 6 1.8946 3.4327 5.2848 10 6 3.0015 3.3002 6.1020 11 6 4.1401 2.6509 5.6379 12 7 5.2559 2.5200 6.4669 13 6 5.1785 2.8981 7.7989 14 6 5.7179 4.1071 8.2162 15 6 5.6372 4.4783 9.5440 16 6 5.0184 3.6519 10.4737 17 6 4.4786 2.4586 10.0917 18 6 4.5420 2.0580 8.7439 19 6 3.9822 0.8285 8.3400 20 1 4.3530 0.3308 7.4561 21 6 2.9465 0.2532 9.0841 22 7 2.2532 0.9872 9.9171 23 14 2.5531 -1.5625 8.8892 24 1 3.3542 -2.3497 9.8608 25 1 1.1073 -1.7858 9.1436 26 1 2.8854 -1.9954 7.5080 27 6 4.1671 2.1333 4.3510 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.0402 1.2445 -0.3516 32 1 1.4388 1.9576 -0.6606 33 1 1.1981 2.3030 1.6893 34 1 1.0482 3.0351 3.3648 35 1 1.0130 3.9382 5.6506 36 1 2.9820 3.7025 7.1041 37 1 6.0854 2.1644 6.1111 38 1 6.2010 4.7578 7.5022 39 1 6.0592 5.4201 9.8627 40 1 4.9642 3.9570 11.5082 41 1 3.9994 1.8238 10.8222 42 1 1.5349 0.5884 10.4327 43 1 5.0502 1.6282 3.9885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216465128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:14 Heat of formation + Delta-G solvation = -27.400426 kcal Electronic energy + Delta-G solvation = -26778.239190 eV Core-core repulsion = 22981.102203 eV Total energy + Delta-G solvation = -3797.136986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05754 -38.86424 -37.84850 -37.19504 -34.54469 -33.84843 -33.71827 -30.63214 -29.87401 -29.60622 -27.69924 -27.24599 -25.39846 -25.16048 -22.92892 -21.76377 -21.08871 -20.79043 -19.72443 -18.08350 -17.33748 -17.01868 -16.62855 -16.12405 -15.94281 -15.43129 -15.20465 -15.16764 -14.48437 -14.36372 -14.16857 -13.85283 -13.53777 -13.45723 -13.15365 -12.74592 -12.47831 -12.27029 -12.12561 -11.72018 -11.61708 -11.31694 -11.21855 -11.16889 -10.91929 -10.74365 -10.52249 -10.45757 -10.25703 -9.79348 -9.67895 -9.49689 -9.30763 -9.26651 -8.43176 -7.55738 -7.54766 -6.95283 -6.62682 -4.46091 1.36788 2.07728 2.65143 2.83725 3.03217 3.08308 3.08677 3.16616 3.22442 3.76774 3.87071 4.34973 4.50050 4.53450 4.65415 4.92082 5.04478 5.09834 5.34004 5.40927 5.45249 5.47448 5.52274 5.88530 6.05413 6.12983 6.16926 6.24964 6.31250 6.38957 6.52785 6.72314 6.82289 6.95323 6.97454 7.01670 7.06367 7.18252 7.27569 7.42822 7.49017 7.65310 7.83782 7.98931 8.14180 8.26904 8.29648 8.46626 8.65400 8.75206 8.97800 10.03931 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003604 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.821515 B = 7766.701066 C = 9078.832653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.274 3.726 4 N -0.744 5.744 5 C 0.572 3.428 6 O -0.535 6.535 7 C -0.105 4.105 8 C -0.160 4.160 9 C -0.087 4.087 10 C -0.134 4.134 11 C 0.235 3.765 12 N -0.663 5.663 13 C -0.008 4.008 14 C -0.083 4.083 15 C -0.243 4.243 16 C -0.101 4.101 17 C -0.158 4.158 18 C 0.116 3.884 19 C -0.440 4.440 20 H 0.080 0.920 21 C 0.079 3.921 22 N -0.783 5.783 23 Si 0.903 3.097 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.260 1.260 27 C -0.147 4.147 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.399 0.601 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.391 0.609 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.282 0.718 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 2.798 -12.185 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C 0.112 3.888 4 N -0.406 5.406 5 C 0.362 3.638 6 O -0.412 6.412 7 C -0.109 4.109 8 C -0.181 4.181 9 C -0.106 4.106 10 C -0.157 4.157 11 C 0.130 3.870 12 N -0.283 5.283 13 C -0.102 4.102 14 C -0.103 4.103 15 C -0.263 4.263 16 C -0.120 4.120 17 C -0.178 4.178 18 C 0.112 3.888 19 C -0.469 4.469 20 H 0.098 0.902 21 C -0.140 4.140 22 N -0.408 5.408 23 Si 0.727 3.273 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.226 0.774 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.787 2.194 -12.204 13.292 hybrid contribution -0.748 -0.525 0.170 0.930 sum -5.535 1.669 -12.034 13.351 Atomic orbital electron populations 1.22813 0.81358 1.03062 0.99823 1.88130 1.19806 1.29113 1.93669 1.22588 1.00689 0.82660 0.82835 1.46554 1.17993 1.59883 1.16192 1.18527 0.82357 0.77729 0.85196 1.90738 1.33007 1.42284 1.75153 1.19321 0.95822 1.02770 0.92977 1.20729 0.97011 1.03491 0.96887 1.20742 0.97703 0.98919 0.93201 1.20984 0.92517 1.01400 1.00811 1.17828 0.88511 0.91740 0.88931 1.41211 1.10691 1.68926 1.07472 1.17255 1.14689 0.95729 0.82519 1.20755 0.99520 0.94732 0.95248 1.20205 1.11286 1.01133 0.93640 1.20473 0.98634 0.95553 0.97300 1.21001 1.03474 0.97180 0.96104 1.17798 0.89190 0.91278 0.90551 1.19450 1.14350 1.03569 1.09492 0.90229 1.25917 0.94825 0.99862 0.93389 1.69847 1.14721 1.36891 1.19317 0.86369 0.78132 0.82528 0.80254 1.19167 1.20185 1.18392 1.20543 0.99019 1.04331 0.93148 0.93931 0.93922 0.89638 0.86258 0.90955 0.76560 0.87234 0.86313 0.85134 0.77403 0.89214 0.89349 0.89415 0.86435 0.90705 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.88 101.05 1.10 1.32 16 2 O -0.39 -4.76 10.93 -35.23 -0.39 -5.15 16 3 C 0.27 2.84 7.13 59.84 0.43 3.27 16 4 N -0.74 -8.75 5.48 -66.04 -0.36 -9.11 16 5 C 0.57 9.20 7.77 -12.32 -0.10 9.10 16 6 O -0.53 -10.31 15.85 5.32 0.08 -10.22 16 7 C -0.11 -1.76 5.87 -104.99 -0.62 -2.38 16 8 C -0.16 -2.37 9.54 -39.15 -0.37 -2.75 16 9 C -0.09 -1.43 10.02 -39.67 -0.40 -1.82 16 10 C -0.13 -2.64 9.25 -39.29 -0.36 -3.01 16 11 C 0.23 4.62 6.24 -83.83 -0.52 4.09 16 12 N -0.66 -13.28 4.66 -8.08 -0.04 -13.32 16 13 C -0.01 -0.19 4.44 -83.28 -0.37 -0.56 16 14 C -0.08 -1.75 9.96 -39.42 -0.39 -2.15 16 15 C -0.24 -5.13 10.03 -39.37 -0.40 -5.52 16 16 C -0.10 -2.24 9.97 -39.98 -0.40 -2.63 16 17 C -0.16 -3.84 8.64 -39.29 -0.34 -4.18 16 18 C 0.12 2.85 5.39 -106.64 -0.57 2.28 16 19 C -0.44 -11.02 8.37 -37.91 -0.32 -11.34 16 20 H 0.08 2.02 7.60 -52.48 -0.40 1.63 16 21 C 0.08 1.91 5.12 -17.33 -0.09 1.82 16 22 N -0.78 -19.14 11.03 55.55 0.61 -18.53 16 23 Si 0.90 18.60 29.60 -169.99 -5.03 13.56 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 27 C -0.15 -2.71 9.45 -38.95 -0.37 -3.08 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.12 1.37 7.28 -51.93 -0.38 0.99 16 32 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 33 H 0.40 3.63 6.86 -40.82 -0.28 3.35 16 34 H 0.11 1.21 6.40 -52.49 -0.34 0.87 16 35 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.13 2.87 6.90 -52.49 -0.36 2.51 16 37 H 0.39 7.05 8.84 -40.82 -0.36 6.69 16 38 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.12 2.97 6.21 -52.49 -0.33 2.64 16 42 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 43 H 0.13 2.30 7.65 -52.49 -0.40 1.90 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -29.31 367.50 -9.01 -38.33 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -5.35 Total: 16.43 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -4.09 Total: -17.53 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.21 Total: -40.95 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.30 Total: -15.37 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.31 -9.01 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216465128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.925 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds