Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00165 * 2 1 4 4 N 1.46493 * 109.47451 * 79.99984 * 3 2 1 5 5 C 1.34779 * 120.00082 * 94.99980 * 4 3 2 6 6 O 1.21548 * 120.00375 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.39631 * 120.10814 * 359.72461 * 7 5 4 9 9 C 1.38000 * 120.01627 * 179.79476 * 8 7 5 10 10 C 1.38228 * 120.23360 * 0.45942 * 9 8 7 11 11 C 1.39042 * 120.21043 * 359.79170 * 10 9 8 12 12 N 1.39621 * 120.00665 * 179.97438 * 11 10 9 13 13 C 1.38687 * 120.00321 * 7.40094 * 12 11 10 14 14 C 1.38806 * 120.29710 * 258.03019 * 13 12 11 15 15 C 1.38115 * 120.02442 * 179.97438 * 14 13 12 16 16 C 1.38933 * 120.63265 * 359.97438 * 15 14 13 17 17 C 1.36431 * 120.60298 * 359.97438 * 16 15 14 18 18 C 1.40743 * 119.95380 * 359.76701 * 17 16 15 19 19 C 1.41004 * 120.30804 * 180.23326 * 18 17 16 20 20 H 1.08005 * 119.99898 * 204.93299 * 19 18 17 21 21 C 1.39910 * 120.00473 * 24.93264 * 19 18 17 22 22 N 1.30895 * 119.99491 * 18.54469 * 21 19 18 23 23 Si 1.86796 * 120.00717 * 198.54869 * 21 19 18 24 24 H 1.48504 * 109.47338 * 89.99758 * 23 21 19 25 25 H 1.48493 * 109.47370 * 210.00326 * 23 21 19 26 26 H 1.48510 * 109.46840 * 330.00031 * 23 21 19 27 27 C 1.38743 * 119.98562 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.47248 * 300.00224 * 1 2 3 29 29 H 1.09004 * 109.47055 * 59.99981 * 1 2 3 30 30 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47200 * 200.00410 * 3 2 1 32 32 H 1.09005 * 109.47155 * 319.99900 * 3 2 1 33 33 H 0.97006 * 120.00379 * 275.00435 * 4 3 2 34 34 H 1.07997 * 119.99014 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.88270 * 180.23329 * 9 8 7 36 36 H 1.07998 * 119.89668 * 179.77190 * 10 9 8 37 37 H 0.97006 * 120.00080 * 187.39624 * 12 11 10 38 38 H 1.08007 * 119.99001 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.68526 * 179.97438 * 15 14 13 40 40 H 1.07990 * 119.69654 * 179.97438 * 16 15 14 41 41 H 1.07994 * 120.01843 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99497 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.11593 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 1.9898 1.8491 1.3601 5 6 3.0709 1.7187 2.1544 6 8 4.0630 1.1503 1.7420 7 6 3.0500 2.2670 3.5274 8 6 1.9135 2.9254 4.0015 9 6 1.8946 3.4327 5.2848 10 6 3.0015 3.3002 6.1020 11 6 4.1401 2.6509 5.6379 12 7 5.2559 2.5200 6.4669 13 6 5.1785 2.8981 7.7989 14 6 5.7179 4.1071 8.2162 15 6 5.6372 4.4783 9.5440 16 6 5.0184 3.6519 10.4737 17 6 4.4786 2.4586 10.0917 18 6 4.5420 2.0580 8.7439 19 6 3.9822 0.8285 8.3400 20 1 4.3530 0.3308 7.4561 21 6 2.9465 0.2532 9.0841 22 7 2.2532 0.9872 9.9171 23 14 2.5531 -1.5625 8.8892 24 1 3.3542 -2.3497 9.8608 25 1 1.1073 -1.7858 9.1436 26 1 2.8854 -1.9954 7.5080 27 6 4.1671 2.1333 4.3510 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.0402 1.2445 -0.3516 32 1 1.4388 1.9576 -0.6606 33 1 1.1981 2.3030 1.6893 34 1 1.0482 3.0351 3.3648 35 1 1.0130 3.9382 5.6506 36 1 2.9820 3.7025 7.1041 37 1 6.0854 2.1644 6.1111 38 1 6.2010 4.7578 7.5022 39 1 6.0592 5.4201 9.8627 40 1 4.9642 3.9570 11.5082 41 1 3.9994 1.8238 10.8222 42 1 1.5349 0.5884 10.4327 43 1 5.0502 1.6282 3.9885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216465128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = -45.994994 kcal Electronic energy + Delta-G solvation = -26779.045511 eV Core-core repulsion = 22981.102203 eV Total energy + Delta-G solvation = -3797.943307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31010 -40.31346 -39.08466 -38.47034 -36.06265 -35.53806 -34.93313 -32.00214 -31.53700 -31.24606 -29.01520 -28.27991 -26.94450 -26.34840 -24.18246 -23.15706 -22.84605 -22.27157 -21.10242 -19.39871 -19.09620 -18.14608 -17.68788 -17.41219 -17.21541 -16.95282 -16.70649 -16.14837 -16.00163 -15.65518 -15.48873 -15.45466 -14.97805 -14.49446 -14.48093 -14.38699 -14.15752 -13.68334 -13.46686 -13.07794 -12.88210 -12.84387 -12.72054 -12.51242 -12.30679 -12.23689 -12.14421 -11.86441 -11.53610 -11.34536 -11.05816 -10.89044 -10.86751 -10.54205 -9.81971 -9.34434 -9.29567 -8.70777 -8.17354 -6.31596 -0.00197 0.69582 0.93036 1.08150 1.33940 1.43779 1.48639 1.88140 2.11829 2.16676 2.71129 2.88450 2.98099 3.13834 3.70098 3.73914 4.01221 4.07179 4.27588 4.41362 4.46947 4.47207 4.53646 4.58797 4.59816 4.66896 4.75568 4.87524 4.90608 5.02204 5.14105 5.25750 5.29072 5.38770 5.41688 5.50660 5.59901 5.63927 5.85210 6.01383 6.06301 6.10780 6.19150 6.36008 6.46396 6.55080 6.82737 6.90712 6.97965 7.12603 7.27678 8.27982 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003604 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.821515 B = 7766.701066 C = 9078.832653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.425 6.425 3 C 0.269 3.731 4 N -0.724 5.724 5 C 0.571 3.429 6 O -0.575 6.575 7 C -0.111 4.111 8 C -0.138 4.138 9 C -0.085 4.085 10 C -0.157 4.157 11 C 0.218 3.782 12 N -0.669 5.669 13 C 0.000 4.000 14 C -0.090 4.090 15 C -0.236 4.236 16 C -0.105 4.105 17 C -0.183 4.183 18 C 0.091 3.909 19 C -0.466 4.466 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.810 5.810 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.271 1.271 27 C -0.159 4.159 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.397 0.603 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.288 0.712 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 3.773 -13.833 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.339 6.339 3 C 0.108 3.892 4 N -0.386 5.386 5 C 0.360 3.640 6 O -0.455 6.455 7 C -0.114 4.114 8 C -0.159 4.159 9 C -0.103 4.103 10 C -0.180 4.180 11 C 0.115 3.885 12 N -0.291 5.291 13 C -0.094 4.094 14 C -0.110 4.110 15 C -0.256 4.256 16 C -0.124 4.124 17 C -0.203 4.203 18 C 0.087 3.913 19 C -0.495 4.495 20 H 0.082 0.918 21 C -0.170 4.170 22 N -0.435 5.435 23 Si 0.784 3.216 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.196 1.196 27 C -0.183 4.183 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.253 0.747 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.716 3.195 -13.870 15.738 hybrid contribution -0.190 -0.712 0.571 0.932 sum -6.906 2.483 -13.299 15.189 Atomic orbital electron populations 1.23029 0.79430 1.03818 1.01437 1.88093 1.22062 1.30042 1.93750 1.22851 1.00859 0.83151 0.82293 1.46432 1.17143 1.58741 1.16282 1.18476 0.82966 0.77383 0.85156 1.90724 1.34795 1.44218 1.75793 1.19581 0.95851 1.02618 0.93395 1.21156 0.97526 1.00676 0.96508 1.21074 0.97407 0.98437 0.93420 1.20925 0.94059 1.02857 1.00166 1.17911 0.88491 0.92749 0.89378 1.41158 1.11354 1.69764 1.06851 1.17397 1.13189 0.95610 0.83194 1.21047 0.99394 0.94575 0.95996 1.20583 1.09870 1.01812 0.93291 1.20739 0.97990 0.94838 0.98803 1.20984 1.05057 0.98309 0.95912 1.18077 0.90107 0.91860 0.91249 1.19424 1.15696 1.04571 1.09825 0.91836 1.26494 0.94378 1.03029 0.93087 1.69878 1.15304 1.38178 1.20163 0.85504 0.78476 0.78242 0.79413 1.18572 1.18895 1.19568 1.20578 0.99831 1.04756 0.93118 0.93263 0.91259 0.89517 0.88058 0.86197 0.74695 0.82374 0.83571 0.88180 0.76747 0.87137 0.86326 0.87175 0.88103 0.90096 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.88 113.37 1.23 1.48 16 2 O -0.42 -9.36 10.93 -148.98 -1.63 -10.98 16 3 C 0.27 4.85 7.13 127.77 0.91 5.76 16 4 N -0.72 -14.84 5.48 -581.60 -3.18 -18.03 16 5 C 0.57 17.58 7.77 86.79 0.67 18.26 16 6 O -0.58 -22.24 15.85 -3.87 -0.06 -22.30 16 7 C -0.11 -3.57 5.87 -20.10 -0.12 -3.69 16 8 C -0.14 -3.68 9.54 22.55 0.22 -3.47 16 9 C -0.08 -2.64 10.02 22.21 0.22 -2.42 16 10 C -0.16 -6.26 9.25 22.46 0.21 -6.05 16 11 C 0.22 8.82 6.24 38.21 0.24 9.06 16 12 N -0.67 -27.84 4.66 -179.46 -0.84 -28.67 16 13 C 0.00 0.00 4.44 39.01 0.17 0.18 16 14 C -0.09 -3.80 9.96 22.38 0.22 -3.58 16 15 C -0.24 -9.67 10.03 22.41 0.22 -9.44 16 16 C -0.11 -4.64 9.97 22.01 0.22 -4.42 16 17 C -0.18 -9.17 8.64 22.46 0.19 -8.98 16 18 C 0.09 4.65 5.39 -21.17 -0.11 4.54 16 19 C -0.47 -24.40 8.37 23.35 0.20 -24.21 16 20 H 0.06 3.42 7.60 -2.91 -0.02 3.39 16 21 C 0.05 2.31 5.12 85.24 0.44 2.75 16 22 N -0.81 -40.71 11.03 21.82 0.24 -40.47 16 23 Si 0.96 39.00 29.60 68.60 2.03 41.04 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C -0.16 -5.98 9.45 22.68 0.21 -5.77 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 2.21 7.28 -2.38 -0.02 2.19 16 32 H 0.12 1.04 7.93 -2.38 -0.02 1.02 16 33 H 0.42 5.66 6.86 -92.70 -0.64 5.02 16 34 H 0.16 2.62 6.40 -2.91 -0.02 2.60 16 35 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.10 4.58 6.90 -2.91 -0.02 4.56 16 37 H 0.40 15.03 8.84 -92.70 -0.82 14.21 16 38 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.11 4.25 8.06 -2.92 -0.02 4.23 16 41 H 0.10 5.32 6.21 -2.91 -0.02 5.30 16 42 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 43 H 0.12 4.53 7.65 -2.91 -0.02 4.51 16 Total: -1.00 -67.01 367.50 1.52 -65.50 By element: Atomic # 1 Polarization: 44.32 SS G_CDS: -0.39 Total: 43.93 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 5.35 Total: -30.00 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -3.78 Total: -87.17 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.69 Total: -33.29 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.04 kcal Total: -67.01 1.52 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216465128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.500 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds