Wall clock time and date at job start Tue Mar 31 2020 14:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00133 * 2 1 4 4 N 1.46501 * 109.47235 * 79.99517 * 3 2 1 5 5 C 1.34778 * 119.99746 * 95.00258 * 4 3 2 6 6 O 1.21548 * 119.99934 * 0.02562 * 5 4 3 7 7 C 1.47861 * 119.99606 * 180.02562 * 5 4 3 8 8 C 1.39635 * 120.10985 * 359.97438 * 7 5 4 9 9 C 1.37997 * 120.01368 * 179.97438 * 8 7 5 10 10 C 1.38229 * 120.23674 * 0.04580 * 9 8 7 11 11 C 1.39042 * 120.21233 * 359.97438 * 10 9 8 12 12 N 1.39632 * 120.01272 * 179.97438 * 11 10 9 13 13 C 1.38815 * 119.99605 * 328.26862 * 12 11 10 14 14 C 1.39610 * 119.84292 * 334.43402 * 13 12 11 15 15 C 1.36315 * 120.15223 * 179.72187 * 14 13 12 16 16 C 1.40897 * 119.83958 * 0.54836 * 15 14 13 17 17 C 1.41108 * 120.14767 * 179.69647 * 16 15 14 18 18 H 1.08002 * 119.99728 * 207.75374 * 17 16 15 19 19 C 1.39846 * 120.00303 * 27.76405 * 17 16 15 20 20 N 1.30915 * 119.99781 * 12.24212 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 192.24150 * 19 17 16 22 22 H 1.48506 * 109.47095 * 90.00016 * 21 19 17 23 23 H 1.48499 * 109.47360 * 209.99870 * 21 19 17 24 24 H 1.48496 * 109.47523 * 330.00203 * 21 19 17 25 25 C 1.40902 * 119.69757 * 359.72938 * 16 15 14 26 26 C 1.36309 * 119.83877 * 359.97438 * 25 16 15 27 27 C 1.38750 * 119.98171 * 0.25782 * 11 10 9 28 28 H 1.09005 * 109.46872 * 60.00274 * 1 2 3 29 29 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47423 * 300.00260 * 1 2 3 31 31 H 1.09007 * 109.47159 * 319.99988 * 3 2 1 32 32 H 1.08998 * 109.47495 * 200.00135 * 3 2 1 33 33 H 0.97000 * 120.00118 * 274.99768 * 4 3 2 34 34 H 1.07994 * 119.98790 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.88205 * 180.02562 * 9 8 7 36 36 H 1.07995 * 119.89534 * 179.97438 * 10 9 8 37 37 H 0.96995 * 120.00052 * 148.53879 * 12 11 10 38 38 H 1.08001 * 119.92007 * 359.97438 * 14 13 12 39 39 H 1.08003 * 120.07448 * 180.29501 * 15 14 13 40 40 H 0.97001 * 120.00172 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.08162 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.92449 * 179.97438 * 26 25 16 43 43 H 1.08003 * 120.11331 * 179.72635 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 1.9897 1.8491 1.3602 5 6 3.0708 1.7187 2.1544 6 8 4.0629 1.1504 1.7420 7 6 3.0498 2.2670 3.5275 8 6 1.9114 2.9208 4.0033 9 6 1.8938 3.4313 5.2853 10 6 3.0008 3.2991 6.1025 11 6 4.1396 2.6503 5.6383 12 7 5.2557 2.5196 6.4671 13 6 5.5405 3.5002 7.4075 14 6 5.0954 4.8078 7.2042 15 6 5.3666 5.7745 8.1263 16 6 6.1078 5.4539 9.2808 17 6 6.3978 6.4509 10.2363 18 1 7.2827 6.3696 10.8501 19 6 5.5391 7.5442 10.3889 20 7 4.3560 7.5303 9.8286 21 14 6.0804 9.0241 11.3919 22 1 6.7628 10.0004 10.5050 23 1 4.8919 9.6642 12.0108 24 1 7.0168 8.5845 12.4572 25 6 6.5588 4.1334 9.4765 26 6 6.2752 3.1754 8.5493 27 6 4.1688 2.1378 4.3492 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.4389 1.9576 -0.6606 32 1 3.0402 1.2446 -0.3515 33 1 1.1981 2.3031 1.6892 34 1 1.0443 3.0261 3.3682 35 1 1.0120 3.9362 5.6513 36 1 2.9812 3.7011 7.1046 37 1 5.8342 1.7456 6.3831 38 1 4.5315 5.0530 6.3164 39 1 5.0176 6.7846 7.9701 40 1 3.7605 8.2888 9.9341 41 1 7.1278 3.8809 10.3590 42 1 6.6205 2.1630 8.6977 43 1 5.0539 1.6373 3.9850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216465688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:17 Heat of formation + Delta-G solvation = -26.263577 kcal Electronic energy + Delta-G solvation = -25843.994878 eV Core-core repulsion = 22046.907189 eV Total energy + Delta-G solvation = -3797.087689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33272 -39.17267 -37.99203 -37.37350 -35.14254 -34.10888 -33.14086 -31.04096 -30.01261 -29.60865 -28.16871 -27.65507 -25.61078 -24.80069 -23.03981 -22.30563 -21.04166 -20.83225 -20.03870 -18.27065 -17.39798 -17.15861 -16.78014 -16.38475 -16.15301 -15.75610 -15.42081 -15.14265 -14.71159 -14.51254 -14.17244 -14.01692 -13.69073 -13.55722 -13.19709 -12.90868 -12.48310 -12.31445 -12.09023 -11.90116 -11.81376 -11.71473 -11.42350 -11.19201 -11.15172 -10.94979 -10.63700 -10.62715 -10.15406 -9.92891 -9.83612 -9.68557 -9.46086 -9.19677 -8.76866 -8.02161 -7.65063 -6.77850 -6.57655 -4.28596 1.01325 1.60079 2.69127 2.86191 2.96128 2.97281 3.06219 3.09318 3.18948 3.60120 3.91826 4.00118 4.09860 4.51454 4.62076 4.67004 4.91945 4.95891 5.04695 5.15050 5.24255 5.31711 5.51479 5.61442 5.69687 5.81692 6.01725 6.06339 6.11073 6.19052 6.39004 6.59299 6.60817 6.66907 6.76273 6.83290 6.99629 7.06347 7.18514 7.26013 7.40975 7.51774 7.68701 7.97538 8.05089 8.10353 8.27866 8.39742 8.58482 8.85898 8.92767 10.19659 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.002191 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.475304 B =12774.715825 C =13377.030724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.273 3.727 4 N -0.743 5.743 5 C 0.571 3.429 6 O -0.532 6.532 7 C -0.110 4.110 8 C -0.142 4.142 9 C -0.093 4.093 10 C -0.137 4.137 11 C 0.201 3.799 12 N -0.675 5.675 13 C 0.034 3.966 14 C -0.132 4.132 15 C -0.134 4.134 16 C 0.093 3.907 17 C -0.459 4.459 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.803 5.803 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.199 4.199 26 C -0.124 4.124 27 C -0.126 4.126 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.399 0.601 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.398 0.602 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.279 0.721 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -7.059 -14.204 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C 0.112 3.888 4 N -0.405 5.405 5 C 0.360 3.640 6 O -0.408 6.408 7 C -0.114 4.114 8 C -0.163 4.163 9 C -0.111 4.111 10 C -0.159 4.159 11 C 0.099 3.901 12 N -0.296 5.296 13 C -0.060 4.060 14 C -0.152 4.152 15 C -0.154 4.154 16 C 0.090 3.910 17 C -0.489 4.489 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.429 5.429 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.219 4.219 26 C -0.145 4.145 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.235 0.765 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.232 0.768 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.070 -7.433 -14.486 18.637 hybrid contribution -0.353 0.874 0.671 1.157 sum -9.423 -6.558 -13.815 17.963 Atomic orbital electron populations 1.22826 0.81280 1.03102 0.99893 1.88130 1.19870 1.29058 1.93651 1.22618 1.00850 0.82698 0.82648 1.46549 1.17888 1.59771 1.16296 1.18454 0.82499 0.77889 0.85120 1.90760 1.32844 1.42178 1.75054 1.19448 0.95739 1.02869 0.93336 1.20893 0.97081 1.01493 0.96833 1.20847 0.98084 0.98802 0.93400 1.21373 0.91355 1.02101 1.01085 1.17686 0.87359 0.95812 0.89260 1.41651 1.26162 1.24284 1.37484 1.17234 1.08361 0.88097 0.92277 1.20363 1.03661 0.91665 0.99534 1.21013 1.02420 0.98718 0.93246 1.17637 0.90412 0.91227 0.91706 1.19490 1.07951 1.03932 1.17540 0.90552 1.25875 0.93992 0.99275 0.95297 1.69816 1.05974 1.30220 1.36881 0.86274 0.79080 0.80936 0.80183 1.19384 1.20358 1.18724 1.20611 1.08661 0.93232 0.99438 1.20007 1.02959 0.97817 0.93705 1.20835 0.98535 1.04162 0.91371 0.93811 0.89581 0.93965 0.90763 0.86151 0.76549 0.86676 0.85653 0.84573 0.76774 0.88739 0.85887 0.90990 0.88619 0.89130 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.88 101.05 1.10 1.26 16 2 O -0.39 -4.04 10.93 -35.23 -0.39 -4.43 16 3 C 0.27 2.39 7.13 59.85 0.43 2.81 16 4 N -0.74 -7.23 5.48 -66.04 -0.36 -7.59 16 5 C 0.57 7.87 7.77 -12.32 -0.10 7.78 16 6 O -0.53 -9.14 15.85 5.32 0.08 -9.06 16 7 C -0.11 -1.54 5.87 -104.99 -0.62 -2.16 16 8 C -0.14 -1.69 9.54 -39.15 -0.37 -2.07 16 9 C -0.09 -1.22 10.02 -39.67 -0.40 -1.62 16 10 C -0.14 -2.23 7.71 -39.29 -0.30 -2.53 16 11 C 0.20 3.36 5.89 -83.82 -0.49 2.87 16 12 N -0.68 -11.87 5.42 -8.33 -0.05 -11.91 16 13 C 0.03 0.72 6.06 -83.68 -0.51 0.21 16 14 C -0.13 -2.95 7.77 -39.76 -0.31 -3.26 16 15 C -0.13 -3.34 8.61 -39.27 -0.34 -3.68 16 16 C 0.09 2.39 5.56 -106.79 -0.59 1.79 16 17 C -0.46 -11.83 9.04 -37.89 -0.34 -12.17 16 18 H 0.08 1.90 7.87 -52.49 -0.41 1.48 16 19 C 0.07 1.76 5.23 -17.34 -0.09 1.67 16 20 N -0.80 -20.17 10.84 55.54 0.60 -19.56 16 21 Si 0.91 18.38 29.58 -169.99 -5.03 13.35 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 25 C -0.20 -4.68 9.74 -39.27 -0.38 -5.06 16 26 C -0.12 -2.64 9.87 -39.77 -0.39 -3.03 16 27 C -0.13 -1.97 9.51 -38.95 -0.37 -2.34 16 28 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 32 H 0.12 1.21 7.28 -51.93 -0.38 0.83 16 33 H 0.40 2.78 6.86 -40.82 -0.28 2.50 16 34 H 0.12 0.95 6.40 -52.49 -0.34 0.61 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.14 2.49 6.56 -52.49 -0.34 2.14 16 37 H 0.40 6.11 8.88 -40.82 -0.36 5.75 16 38 H 0.09 2.01 6.29 -52.49 -0.33 1.68 16 39 H 0.12 3.19 6.18 -52.48 -0.32 2.87 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.05 7.65 -52.48 -0.40 1.65 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -30.08 364.35 -8.97 -39.05 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.25 Total: 14.18 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -4.08 Total: -19.52 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.20 Total: -39.07 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.30 Total: -13.48 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.08 -8.97 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216465688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.786 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds