Wall clock time and date at job start Tue Mar 31 2020 14:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00133 * 2 1 4 4 N 1.46501 * 109.47235 * 79.99517 * 3 2 1 5 5 C 1.34778 * 119.99746 * 95.00258 * 4 3 2 6 6 O 1.21548 * 119.99934 * 0.02562 * 5 4 3 7 7 C 1.47861 * 119.99606 * 180.02562 * 5 4 3 8 8 C 1.39635 * 120.10985 * 359.97438 * 7 5 4 9 9 C 1.37997 * 120.01368 * 179.97438 * 8 7 5 10 10 C 1.38229 * 120.23674 * 0.04580 * 9 8 7 11 11 C 1.39042 * 120.21233 * 359.97438 * 10 9 8 12 12 N 1.39632 * 120.01272 * 179.97438 * 11 10 9 13 13 C 1.38815 * 119.99605 * 328.26862 * 12 11 10 14 14 C 1.39610 * 119.84292 * 334.43402 * 13 12 11 15 15 C 1.36315 * 120.15223 * 179.72187 * 14 13 12 16 16 C 1.40897 * 119.83958 * 0.54836 * 15 14 13 17 17 C 1.41108 * 120.14767 * 179.69647 * 16 15 14 18 18 H 1.08002 * 119.99728 * 207.75374 * 17 16 15 19 19 C 1.39846 * 120.00303 * 27.76405 * 17 16 15 20 20 N 1.30915 * 119.99781 * 12.24212 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 192.24150 * 19 17 16 22 22 H 1.48506 * 109.47095 * 90.00016 * 21 19 17 23 23 H 1.48499 * 109.47360 * 209.99870 * 21 19 17 24 24 H 1.48496 * 109.47523 * 330.00203 * 21 19 17 25 25 C 1.40902 * 119.69757 * 359.72938 * 16 15 14 26 26 C 1.36309 * 119.83877 * 359.97438 * 25 16 15 27 27 C 1.38750 * 119.98171 * 0.25782 * 11 10 9 28 28 H 1.09005 * 109.46872 * 60.00274 * 1 2 3 29 29 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47423 * 300.00260 * 1 2 3 31 31 H 1.09007 * 109.47159 * 319.99988 * 3 2 1 32 32 H 1.08998 * 109.47495 * 200.00135 * 3 2 1 33 33 H 0.97000 * 120.00118 * 274.99768 * 4 3 2 34 34 H 1.07994 * 119.98790 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.88205 * 180.02562 * 9 8 7 36 36 H 1.07995 * 119.89534 * 179.97438 * 10 9 8 37 37 H 0.96995 * 120.00052 * 148.53879 * 12 11 10 38 38 H 1.08001 * 119.92007 * 359.97438 * 14 13 12 39 39 H 1.08003 * 120.07448 * 180.29501 * 15 14 13 40 40 H 0.97001 * 120.00172 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.08162 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.92449 * 179.97438 * 26 25 16 43 43 H 1.08003 * 120.11331 * 179.72635 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 1.9897 1.8491 1.3602 5 6 3.0708 1.7187 2.1544 6 8 4.0629 1.1504 1.7420 7 6 3.0498 2.2670 3.5275 8 6 1.9114 2.9208 4.0033 9 6 1.8938 3.4313 5.2853 10 6 3.0008 3.2991 6.1025 11 6 4.1396 2.6503 5.6383 12 7 5.2557 2.5196 6.4671 13 6 5.5405 3.5002 7.4075 14 6 5.0954 4.8078 7.2042 15 6 5.3666 5.7745 8.1263 16 6 6.1078 5.4539 9.2808 17 6 6.3978 6.4509 10.2363 18 1 7.2827 6.3696 10.8501 19 6 5.5391 7.5442 10.3889 20 7 4.3560 7.5303 9.8286 21 14 6.0804 9.0241 11.3919 22 1 6.7628 10.0004 10.5050 23 1 4.8919 9.6642 12.0108 24 1 7.0168 8.5845 12.4572 25 6 6.5588 4.1334 9.4765 26 6 6.2752 3.1754 8.5493 27 6 4.1688 2.1378 4.3492 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.4389 1.9576 -0.6606 32 1 3.0402 1.2446 -0.3515 33 1 1.1981 2.3031 1.6892 34 1 1.0443 3.0261 3.3682 35 1 1.0120 3.9362 5.6513 36 1 2.9812 3.7011 7.1046 37 1 5.8342 1.7456 6.3831 38 1 4.5315 5.0530 6.3164 39 1 5.0176 6.7846 7.9701 40 1 3.7605 8.2888 9.9341 41 1 7.1278 3.8809 10.3590 42 1 6.6205 2.1630 8.6977 43 1 5.0539 1.6373 3.9850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216465688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:16 Heat of formation + Delta-G solvation = -46.015925 kcal Electronic energy + Delta-G solvation = -25844.851404 eV Core-core repulsion = 22046.907189 eV Total energy + Delta-G solvation = -3797.944215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43307 -40.46456 -39.16347 -38.52344 -36.64975 -35.16132 -34.73368 -32.23766 -31.53552 -31.33880 -29.64182 -28.32338 -26.58949 -26.32579 -24.14354 -23.64627 -22.68656 -22.28053 -21.27387 -19.38252 -19.20928 -18.22491 -17.77838 -17.45278 -17.26166 -16.96023 -16.87695 -16.16332 -15.79150 -15.67366 -15.60349 -15.38756 -14.89652 -14.60063 -14.55646 -14.41865 -14.06560 -13.73299 -13.58375 -13.30599 -12.88288 -12.82199 -12.73538 -12.61589 -12.37923 -12.31582 -12.27072 -11.75121 -11.57156 -11.39532 -11.22024 -10.93428 -10.85274 -10.57774 -9.93525 -9.56871 -9.44335 -8.57067 -8.18869 -6.16148 -0.14638 0.40271 1.03130 1.13811 1.40687 1.52210 1.53732 1.80052 2.06499 2.24518 2.62846 2.77220 2.91181 3.06123 3.65767 3.75502 3.95336 4.01322 4.17370 4.27162 4.37700 4.42297 4.47293 4.51925 4.54438 4.56346 4.64830 4.88533 4.91408 5.00192 5.11357 5.19444 5.22623 5.27224 5.34692 5.40405 5.49640 5.59652 5.71471 5.87857 5.93222 6.09358 6.11570 6.31156 6.43119 6.57864 6.76078 6.94446 6.99525 7.09165 7.11756 8.41939 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.002191 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.475304 B =12774.715825 C =13377.030724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.423 6.423 3 C 0.269 3.731 4 N -0.724 5.724 5 C 0.570 3.430 6 O -0.574 6.574 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.089 4.089 10 C -0.152 4.152 11 C 0.180 3.820 12 N -0.677 5.677 13 C 0.059 3.941 14 C -0.136 4.136 15 C -0.151 4.151 16 C 0.057 3.943 17 C -0.497 4.497 18 H 0.073 0.927 19 C 0.031 3.969 20 N -0.835 5.835 21 Si 0.981 3.019 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.207 4.207 26 C -0.131 4.131 27 C -0.131 4.131 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.111 0.889 37 H 0.408 0.592 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.285 0.715 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -7.281 -15.915 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.338 6.338 3 C 0.108 3.892 4 N -0.386 5.386 5 C 0.359 3.641 6 O -0.454 6.454 7 C -0.121 4.121 8 C -0.135 4.135 9 C -0.107 4.107 10 C -0.174 4.174 11 C 0.080 3.920 12 N -0.300 5.300 13 C -0.036 4.036 14 C -0.157 4.157 15 C -0.171 4.171 16 C 0.054 3.946 17 C -0.527 4.527 18 H 0.091 0.909 19 C -0.182 4.182 20 N -0.462 5.462 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.227 4.227 26 C -0.152 4.152 27 C -0.154 4.154 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.254 0.746 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.129 0.871 37 H 0.245 0.755 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.402 -7.679 -16.247 21.282 hybrid contribution 0.172 0.731 0.945 1.208 sum -11.231 -6.948 -15.302 20.212 Atomic orbital electron populations 1.23042 0.79350 1.03899 1.01469 1.88094 1.22110 1.29859 1.93744 1.22829 1.00832 0.83210 0.82320 1.46431 1.17190 1.58662 1.16268 1.18472 0.82966 0.77492 0.85220 1.90748 1.34666 1.44228 1.75767 1.19654 0.95941 1.02985 0.93505 1.21345 0.97454 0.98242 0.96458 1.21185 0.97877 0.98213 0.93455 1.21362 0.92684 1.02688 1.00715 1.17773 0.87322 0.97299 0.89597 1.41525 1.27196 1.24040 1.37261 1.17291 1.05944 0.88208 0.92168 1.20406 1.03932 0.91999 0.99329 1.20917 1.03545 0.98552 0.94113 1.17950 0.91854 0.92419 0.92365 1.19691 1.08709 1.05650 1.18691 0.90924 1.26669 0.93706 1.01574 0.96285 1.69880 1.06857 1.31208 1.38275 0.85211 0.78771 0.77176 0.78573 1.18942 1.19410 1.18459 1.20807 1.08589 0.93019 1.00299 1.20288 1.02810 0.98856 0.93221 1.20848 0.99231 1.04140 0.91186 0.91564 0.89370 0.92970 0.86417 0.88145 0.74615 0.81934 0.82794 0.87078 0.75548 0.87955 0.87718 0.90459 0.87913 0.86078 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.88 113.37 1.23 1.41 16 2 O -0.42 -7.71 10.93 -148.98 -1.63 -9.34 16 3 C 0.27 3.95 7.13 127.77 0.91 4.86 16 4 N -0.72 -11.62 5.48 -581.59 -3.18 -14.81 16 5 C 0.57 14.56 7.77 86.79 0.67 15.23 16 6 O -0.57 -19.48 15.85 -3.87 -0.06 -19.54 16 7 C -0.12 -3.00 5.87 -20.10 -0.12 -3.12 16 8 C -0.12 -2.27 9.54 22.55 0.22 -2.05 16 9 C -0.09 -2.08 10.02 22.21 0.22 -1.86 16 10 C -0.15 -4.83 7.71 22.46 0.17 -4.66 16 11 C 0.18 5.92 5.89 38.21 0.23 6.15 16 12 N -0.68 -23.63 5.42 -180.27 -0.98 -24.61 16 13 C 0.06 2.49 6.06 38.70 0.23 2.73 16 14 C -0.14 -6.25 7.77 22.15 0.17 -6.08 16 15 C -0.15 -7.89 8.61 22.47 0.19 -7.69 16 16 C 0.06 3.04 5.56 -21.27 -0.12 2.92 16 17 C -0.50 -26.76 9.04 23.36 0.21 -26.55 16 18 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 19 C 0.03 1.54 5.23 85.22 0.45 1.99 16 20 N -0.83 -43.49 10.84 21.81 0.24 -43.26 16 21 Si 0.98 38.50 29.58 68.60 2.03 40.53 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 C -0.21 -9.96 9.74 22.47 0.22 -9.74 16 26 C -0.13 -5.57 9.87 22.15 0.22 -5.35 16 27 C -0.13 -4.00 9.51 22.68 0.22 -3.78 16 28 H 0.07 0.34 8.09 -2.38 -0.02 0.32 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 0.72 7.93 -2.38 -0.02 0.70 16 32 H 0.10 1.89 7.28 -2.39 -0.02 1.88 16 33 H 0.42 3.71 6.86 -92.71 -0.64 3.07 16 34 H 0.16 1.65 6.40 -2.91 -0.02 1.63 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.11 4.11 6.56 -2.91 -0.02 4.09 16 37 H 0.41 12.34 8.88 -92.71 -0.82 11.51 16 38 H 0.10 4.45 6.29 -2.91 -0.02 4.43 16 39 H 0.10 5.75 6.18 -2.91 -0.02 5.74 16 40 H 0.28 13.47 8.30 -92.71 -0.77 12.70 16 41 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.12 3.90 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -69.48 364.35 1.35 -68.13 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.39 Total: 38.48 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 5.33 Total: -35.59 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.93 Total: -82.67 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.69 Total: -28.88 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -69.48 1.35 -68.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216465688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.115 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds