Wall clock time and date at job start Tue Mar 31 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47062 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.47339 * 30.00206 * 3 2 1 6 6 H 1.48503 * 109.47008 * 150.00220 * 3 2 1 7 7 C 1.38792 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00183 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00170 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00272 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47414 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99780 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00394 * 179.97438 * 11 10 9 14 14 C 1.45531 * 117.46793 * 0.02562 * 13 11 10 15 15 C 1.53086 * 110.02468 * 153.85573 * 14 13 11 16 16 O 1.43248 * 107.79672 * 49.42624 * 15 14 13 17 17 C 1.42316 * 113.42972 * 290.43799 * 16 15 14 18 18 H 1.09000 * 109.99376 * 294.66379 * 17 16 15 19 19 C 1.53901 * 109.51142 * 173.65080 * 17 16 15 20 20 N 1.47198 * 107.61560 * 256.62728 * 19 17 16 21 21 C 1.46898 * 110.99886 * 123.55185 * 20 19 17 22 22 C 1.53006 * 109.47006 * 69.87317 * 21 20 19 23 23 C 1.52996 * 117.50166 * 243.62116 * 22 21 20 24 24 C 1.52994 * 59.99957 * 252.51305 * 23 22 21 25 25 C 1.47295 * 109.13106 * 0.90381 * 20 19 17 26 26 C 1.44625 * 117.47246 * 180.02562 * 13 11 10 27 27 H 1.08998 * 109.64911 * 318.56410 * 26 13 11 28 28 H 0.97008 * 120.00390 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46940 * 59.99836 * 10 9 7 30 30 H 1.09006 * 109.47008 * 300.00131 * 10 9 7 31 31 H 1.08997 * 109.38411 * 33.67836 * 14 13 11 32 32 H 1.09005 * 109.28484 * 273.95695 * 14 13 11 33 33 H 1.09007 * 109.78970 * 289.85595 * 15 14 13 34 34 H 1.08993 * 109.79927 * 169.00483 * 15 14 13 35 35 H 1.08998 * 109.82448 * 137.10819 * 19 17 16 36 36 H 1.08997 * 109.89433 * 16.19121 * 19 17 16 37 37 H 1.09001 * 109.47062 * 309.87571 * 21 20 19 38 38 H 1.08993 * 109.47084 * 189.87018 * 21 20 19 39 39 H 1.08998 * 115.54488 * 29.33289 * 22 21 20 40 40 H 1.09000 * 117.49759 * 0.02562 * 23 22 21 41 41 H 1.08997 * 117.50019 * 145.01677 * 23 22 21 42 42 H 1.09001 * 117.49636 * 252.51335 * 24 23 22 43 43 H 1.08999 * 117.50088 * 107.49426 * 24 23 22 44 44 H 1.09011 * 110.07341 * 101.23715 * 25 20 19 45 45 H 1.09001 * 110.07426 * 222.77810 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2961 -0.0003 13 7 6.0458 -4.4945 0.0010 14 6 5.0720 -5.5760 0.0011 15 6 5.6810 -6.8298 -0.6319 16 8 6.9545 -7.0566 -0.0164 17 6 7.9335 -6.0850 -0.3671 18 1 8.1612 -6.1525 -1.4310 19 6 9.2098 -6.3194 0.4604 20 7 9.2434 -5.3031 1.5248 21 6 9.3322 -5.9312 2.8497 22 6 10.7144 -6.5643 3.0224 23 6 10.7796 -8.0838 3.1891 24 6 11.0482 -7.1705 4.3869 25 6 8.0428 -4.4560 1.4215 26 6 7.4815 -4.6693 0.0016 27 1 7.9385 -3.9499 -0.6778 28 1 -0.4851 0.8401 0.0004 29 1 3.6434 -3.4316 -0.8896 30 1 3.6441 -3.4313 0.8904 31 1 4.1943 -5.2726 -0.5696 32 1 4.7780 -5.7956 1.0275 33 1 5.8109 -6.6765 -1.7033 34 1 5.0290 -7.6856 -0.4572 35 1 10.0879 -6.2162 -0.1770 36 1 9.1881 -7.3159 0.9014 37 1 8.5660 -6.7014 2.9387 38 1 9.1796 -5.1760 3.6207 39 1 11.5238 -6.0825 2.4741 40 1 9.8379 -8.6325 3.1753 41 1 11.6321 -8.6021 2.7502 42 1 12.0774 -7.0880 4.7360 43 1 10.2832 -7.1185 5.1616 44 1 7.3056 -4.7596 2.1649 45 1 8.3102 -3.4091 1.5648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217337183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:21 Heat of formation + Delta-G solvation = -32.652570 kcal Electronic energy + Delta-G solvation = -26024.450276 eV Core-core repulsion = 22362.529491 eV Total energy + Delta-G solvation = -3661.920785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14604 -38.97273 -38.09512 -36.54723 -35.02555 -32.47276 -31.96738 -29.98457 -28.90099 -28.13204 -25.91841 -25.58844 -23.69676 -22.67131 -21.83308 -21.35662 -20.45284 -19.04903 -17.83570 -17.55217 -17.07149 -16.55428 -16.05782 -15.68369 -15.46024 -15.04554 -14.96402 -14.83230 -14.45701 -14.13727 -13.93831 -13.54988 -13.25172 -13.19924 -12.99540 -12.79967 -12.34120 -12.21866 -12.09217 -11.90841 -11.79678 -11.51277 -11.38087 -11.29034 -11.03570 -10.89931 -10.64648 -10.60392 -10.26854 -10.14176 -9.88473 -9.53188 -9.03568 -8.79350 -8.53793 -8.50908 -6.96479 -6.32201 -4.04564 2.53081 2.80389 3.01836 3.30653 3.35724 3.45340 3.48207 3.53583 3.76352 4.13764 4.30008 4.32506 4.47217 4.50250 4.56687 4.63818 4.71994 4.77705 4.85223 4.98085 5.05301 5.07397 5.08879 5.14580 5.19293 5.25860 5.30902 5.32824 5.40333 5.46699 5.56544 5.58085 5.64925 5.67267 5.77592 5.80204 5.91770 5.93779 5.97670 6.46039 6.64968 6.79431 6.83959 7.22997 7.90638 8.31176 8.37681 9.13892 10.76910 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002762 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.923675 B =10133.510100 C =10773.570773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.526 3.474 12 O -0.509 6.509 13 N -0.605 5.605 14 C 0.076 3.924 15 C 0.050 3.950 16 O -0.371 6.371 17 C 0.066 3.934 18 H 0.078 0.922 19 C 0.054 3.946 20 N -0.523 5.523 21 C 0.082 3.918 22 C -0.144 4.144 23 C -0.184 4.184 24 C -0.179 4.179 25 C 0.039 3.961 26 C 0.117 3.883 27 H 0.103 0.897 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.647 -18.738 2.366 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.272 4.272 11 C 0.314 3.686 12 O -0.382 6.382 13 N -0.342 5.342 14 C -0.047 4.047 15 C -0.027 4.027 16 O -0.290 6.290 17 C 0.007 3.993 18 H 0.096 0.904 19 C -0.074 4.074 20 N -0.247 5.247 21 C -0.046 4.046 22 C -0.163 4.163 23 C -0.221 4.221 24 C -0.216 4.216 25 C -0.090 4.090 26 C 0.011 3.989 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.098 -17.127 2.439 26.518 hybrid contribution -1.750 -0.679 -0.048 1.877 sum 18.349 -17.806 2.391 25.680 Atomic orbital electron populations 1.69936 1.05907 1.27810 1.47952 1.24709 0.94458 0.98981 0.93143 0.86736 0.81908 0.83270 0.79954 1.19193 1.19909 1.15903 1.22293 0.88172 0.97530 1.58928 0.89393 1.84816 1.09391 0.99833 1.97407 1.23338 0.93781 1.04507 1.05583 1.20469 0.90870 0.81948 0.75327 1.90706 1.58664 1.41666 1.47169 1.46976 1.04882 1.06472 1.75862 1.22046 0.92213 0.87918 1.02561 1.22980 0.85180 0.97580 0.96924 1.88003 1.20644 1.49118 1.71201 1.23074 0.89649 0.87063 0.99545 0.90437 1.22813 0.94970 0.96035 0.93622 1.63262 1.38721 1.19783 1.02903 1.21872 0.94357 0.97458 0.90911 1.22295 0.98946 0.94817 1.00214 1.23065 1.03158 0.93065 1.02829 1.22939 1.02542 1.04549 0.91597 1.23215 0.90268 0.99203 0.96283 1.21557 0.81242 0.97704 0.98368 0.87884 0.91904 0.88477 0.88442 0.88647 0.91016 0.91951 0.87102 0.88900 0.90575 0.94090 0.90361 0.86914 0.88969 0.88906 0.88734 0.88879 0.92947 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.17 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.31 4.64 36.00 0.17 -2.14 16 11 C 0.53 9.31 7.44 -10.99 -0.08 9.23 16 12 O -0.51 -10.70 15.24 5.55 0.08 -10.62 16 13 N -0.61 -8.26 2.83 -167.41 -0.47 -8.73 16 14 C 0.08 0.81 5.97 -4.52 -0.03 0.78 16 15 C 0.05 0.44 7.01 37.20 0.26 0.70 16 16 O -0.37 -3.90 10.30 -35.23 -0.36 -4.26 16 17 C 0.07 0.67 3.52 -26.20 -0.09 0.58 16 18 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 19 C 0.05 0.50 6.22 -3.19 -0.02 0.48 16 20 N -0.52 -5.60 5.12 -232.69 -1.19 -6.79 16 21 C 0.08 0.79 4.76 -3.82 -0.02 0.77 16 22 C -0.14 -1.17 5.30 -90.62 -0.48 -1.65 16 23 C -0.18 -1.31 10.14 -26.74 -0.27 -1.58 16 24 C -0.18 -1.27 10.25 -26.74 -0.27 -1.54 16 25 C 0.04 0.50 6.11 -3.00 -0.02 0.48 16 26 C 0.12 1.47 2.87 -68.26 -0.20 1.28 16 27 H 0.10 1.43 7.60 -51.93 -0.39 1.04 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 1.69 7.24 -51.92 -0.38 1.32 16 30 H 0.10 1.74 8.04 -51.91 -0.42 1.32 16 31 H 0.10 0.96 6.26 -51.93 -0.32 0.63 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.70 7.11 -51.93 -0.37 0.33 16 37 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 38 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.71 7.66 -51.92 -0.40 0.31 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -32.78 369.86 -10.46 -43.23 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.32 Total: 0.17 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.84 Total: -4.46 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.89 Total: -41.04 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.28 Total: -14.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.78 -10.46 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217337183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.581 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds