Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47062 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.47339 * 30.00206 * 3 2 1 6 6 H 1.48503 * 109.47008 * 150.00220 * 3 2 1 7 7 C 1.38792 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00183 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00170 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00272 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47414 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99780 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00394 * 179.97438 * 11 10 9 14 14 C 1.45531 * 117.46793 * 0.02562 * 13 11 10 15 15 C 1.53086 * 110.02468 * 153.85573 * 14 13 11 16 16 O 1.43248 * 107.79672 * 49.42624 * 15 14 13 17 17 C 1.42316 * 113.42972 * 290.43799 * 16 15 14 18 18 H 1.09000 * 109.99376 * 294.66379 * 17 16 15 19 19 C 1.53901 * 109.51142 * 173.65080 * 17 16 15 20 20 N 1.47198 * 107.61560 * 256.62728 * 19 17 16 21 21 C 1.46898 * 110.99886 * 123.55185 * 20 19 17 22 22 C 1.53006 * 109.47006 * 69.87317 * 21 20 19 23 23 C 1.52996 * 117.50166 * 243.62116 * 22 21 20 24 24 C 1.52994 * 59.99957 * 252.51305 * 23 22 21 25 25 C 1.47295 * 109.13106 * 0.90381 * 20 19 17 26 26 C 1.44625 * 117.47246 * 180.02562 * 13 11 10 27 27 H 1.08998 * 109.64911 * 318.56410 * 26 13 11 28 28 H 0.97008 * 120.00390 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46940 * 59.99836 * 10 9 7 30 30 H 1.09006 * 109.47008 * 300.00131 * 10 9 7 31 31 H 1.08997 * 109.38411 * 33.67836 * 14 13 11 32 32 H 1.09005 * 109.28484 * 273.95695 * 14 13 11 33 33 H 1.09007 * 109.78970 * 289.85595 * 15 14 13 34 34 H 1.08993 * 109.79927 * 169.00483 * 15 14 13 35 35 H 1.08998 * 109.82448 * 137.10819 * 19 17 16 36 36 H 1.08997 * 109.89433 * 16.19121 * 19 17 16 37 37 H 1.09001 * 109.47062 * 309.87571 * 21 20 19 38 38 H 1.08993 * 109.47084 * 189.87018 * 21 20 19 39 39 H 1.08998 * 115.54488 * 29.33289 * 22 21 20 40 40 H 1.09000 * 117.49759 * 0.02562 * 23 22 21 41 41 H 1.08997 * 117.50019 * 145.01677 * 23 22 21 42 42 H 1.09001 * 117.49636 * 252.51335 * 24 23 22 43 43 H 1.08999 * 117.50088 * 107.49426 * 24 23 22 44 44 H 1.09011 * 110.07341 * 101.23715 * 25 20 19 45 45 H 1.09001 * 110.07426 * 222.77810 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2961 -0.0003 13 7 6.0458 -4.4945 0.0010 14 6 5.0720 -5.5760 0.0011 15 6 5.6810 -6.8298 -0.6319 16 8 6.9545 -7.0566 -0.0164 17 6 7.9335 -6.0850 -0.3671 18 1 8.1612 -6.1525 -1.4310 19 6 9.2098 -6.3194 0.4604 20 7 9.2434 -5.3031 1.5248 21 6 9.3322 -5.9312 2.8497 22 6 10.7144 -6.5643 3.0224 23 6 10.7796 -8.0838 3.1891 24 6 11.0482 -7.1705 4.3869 25 6 8.0428 -4.4560 1.4215 26 6 7.4815 -4.6693 0.0016 27 1 7.9385 -3.9499 -0.6778 28 1 -0.4851 0.8401 0.0004 29 1 3.6434 -3.4316 -0.8896 30 1 3.6441 -3.4313 0.8904 31 1 4.1943 -5.2726 -0.5696 32 1 4.7780 -5.7956 1.0275 33 1 5.8109 -6.6765 -1.7033 34 1 5.0290 -7.6856 -0.4572 35 1 10.0879 -6.2162 -0.1770 36 1 9.1881 -7.3159 0.9014 37 1 8.5660 -6.7014 2.9387 38 1 9.1796 -5.1760 3.6207 39 1 11.5238 -6.0825 2.4741 40 1 9.8379 -8.6325 3.1753 41 1 11.6321 -8.6021 2.7502 42 1 12.0774 -7.0880 4.7360 43 1 10.2832 -7.1185 5.1616 44 1 7.3056 -4.7596 2.1649 45 1 8.3102 -3.4091 1.5648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217337183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = -55.032322 kcal Electronic energy + Delta-G solvation = -26025.420735 eV Core-core repulsion = 22362.529491 eV Total energy + Delta-G solvation = -3662.891244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17274 -40.11036 -38.90311 -37.27687 -36.19305 -34.68649 -32.87752 -31.25672 -29.76486 -29.20750 -27.87362 -26.72024 -24.56015 -23.22762 -22.79880 -22.30007 -21.22186 -20.28711 -19.58023 -18.62610 -18.27186 -17.43079 -17.18480 -17.11122 -16.54261 -16.49266 -16.02427 -15.68712 -15.62432 -15.32241 -15.11409 -14.91995 -14.64862 -14.20614 -14.07686 -13.95936 -13.63467 -13.36064 -13.09876 -13.05172 -12.91906 -12.85677 -12.64934 -12.35742 -12.29080 -12.12924 -11.89341 -11.72895 -11.28214 -11.19515 -11.18453 -10.86658 -10.75890 -10.54278 -9.86957 -9.42514 -9.02893 -8.53033 -6.24303 0.92431 1.29970 1.38690 1.41738 1.49828 1.84230 2.23259 2.58970 2.64775 2.79204 2.85295 2.99856 3.20625 3.45767 3.52492 3.74429 3.84874 3.88985 4.01013 4.05598 4.06538 4.14445 4.17005 4.28027 4.31928 4.37746 4.41635 4.48235 4.59693 4.64257 4.72038 4.75447 4.80431 4.82283 4.85611 4.96786 5.04720 5.27367 5.31945 5.40205 5.69256 5.81524 5.95033 5.96465 6.08450 6.10049 6.92127 6.95685 8.59151 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002762 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.923675 B =10133.510100 C =10773.570773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.175 6.175 10 C -0.106 4.106 11 C 0.528 3.472 12 O -0.549 6.549 13 N -0.591 5.591 14 C 0.065 3.935 15 C 0.053 3.947 16 O -0.379 6.379 17 C 0.073 3.927 18 H 0.097 0.903 19 C 0.056 3.944 20 N -0.527 5.527 21 C 0.085 3.915 22 C -0.152 4.152 23 C -0.176 4.176 24 C -0.177 4.177 25 C 0.047 3.953 26 C 0.113 3.887 27 H 0.089 0.911 28 H 0.277 0.723 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.041 0.959 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.055 -20.673 2.025 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.052 5.948 10 C -0.256 4.256 11 C 0.315 3.685 12 O -0.426 6.426 13 N -0.326 5.326 14 C -0.057 4.057 15 C -0.023 4.023 16 O -0.298 6.298 17 C 0.014 3.986 18 H 0.115 0.885 19 C -0.071 4.071 20 N -0.251 5.251 21 C -0.042 4.042 22 C -0.170 4.170 23 C -0.213 4.213 24 C -0.214 4.214 25 C -0.083 4.083 26 C 0.007 3.993 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.504 -19.117 2.101 28.850 hybrid contribution -2.172 -0.248 0.081 2.188 sum 19.332 -19.365 2.182 27.450 Atomic orbital electron populations 1.70010 1.07229 1.29022 1.49072 1.25534 0.95264 1.02181 0.92929 0.85891 0.80669 0.79746 0.80224 1.18662 1.18372 1.16178 1.22427 0.90034 0.96731 1.58276 0.91756 1.84759 1.06680 1.05844 1.97566 1.23299 0.95353 0.99800 1.07188 1.20229 0.89857 0.82983 0.75405 1.90694 1.59176 1.43263 1.49515 1.46941 1.05981 1.05775 1.73866 1.22379 0.91980 0.87948 1.03440 1.23154 0.84682 0.97285 0.97187 1.88007 1.21266 1.48854 1.71660 1.23106 0.89711 0.85094 1.00720 0.88510 1.22901 0.95300 0.95687 0.93228 1.63256 1.37358 1.20509 1.03959 1.21842 0.95338 0.96994 0.90073 1.22177 0.97788 0.95689 1.01370 1.23106 1.03572 0.92189 1.02387 1.23021 1.03149 1.03991 0.91276 1.22997 0.90806 0.98325 0.96123 1.21657 0.80252 0.99395 0.97954 0.89323 0.91349 0.86544 0.87119 0.87808 0.90542 0.90826 0.84306 0.87213 0.90035 0.94464 0.91375 0.87189 0.89025 0.87762 0.87746 0.88886 0.94071 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 44.81 27.74 68.60 1.90 46.72 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 7 C -0.53 -30.30 10.04 67.95 0.68 -29.62 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 10 C -0.11 -3.94 4.64 71.23 0.33 -3.61 16 11 C 0.53 18.48 7.44 87.66 0.65 19.13 16 12 O -0.55 -23.43 15.24 -3.05 -0.05 -23.48 16 13 N -0.59 -15.45 2.83 -801.95 -2.27 -17.72 16 14 C 0.06 1.23 5.97 86.59 0.52 1.74 16 15 C 0.05 0.74 7.01 72.01 0.50 1.25 16 16 O -0.38 -6.82 10.30 -148.98 -1.53 -8.35 16 17 C 0.07 1.31 3.52 30.94 0.11 1.42 16 18 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 19 C 0.06 0.93 6.22 86.55 0.54 1.46 16 20 N -0.53 -10.88 5.12 -890.11 -4.56 -15.44 16 21 C 0.09 1.58 4.76 86.31 0.41 1.99 16 22 C -0.15 -2.25 5.30 -10.79 -0.06 -2.31 16 23 C -0.18 -2.12 10.14 30.59 0.31 -1.81 16 24 C -0.18 -2.22 10.25 30.59 0.31 -1.91 16 25 C 0.05 1.20 6.11 86.62 0.53 1.72 16 26 C 0.11 2.75 2.87 45.78 0.13 2.88 16 27 H 0.09 2.45 7.60 -2.39 -0.02 2.43 16 28 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.12 3.90 7.24 -2.39 -0.02 3.89 16 30 H 0.11 3.85 8.04 -2.39 -0.02 3.83 16 31 H 0.10 1.82 6.26 -2.39 -0.01 1.80 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 34 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.29 7.11 -2.39 -0.02 1.27 16 37 H 0.04 0.71 7.69 -2.39 -0.02 0.69 16 38 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.13 8.03 -2.39 -0.02 1.11 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.04 1.12 7.66 -2.38 -0.02 1.11 16 45 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.45 369.86 -0.87 -72.33 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.93 Total: 15.23 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.44 Total: -4.49 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -6.52 Total: -88.13 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.58 Total: -31.83 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -71.45 -0.87 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217337183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.295 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds