Wall clock time and date at job start Tue Mar 31 2020 14:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99525 * 2 1 4 4 C 1.38179 * 119.99854 * 180.02562 * 2 1 3 5 5 C 1.40007 * 119.45472 * 359.97438 * 4 2 1 6 6 C 1.35635 * 121.09823 * 179.97438 * 5 4 2 7 7 C 1.41668 * 119.92693 * 0.27370 * 6 5 4 8 8 N 1.32729 * 120.52196 * 179.74373 * 7 6 5 9 9 O 1.21792 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.46552 * 118.95213 * 359.53122 * 7 6 5 11 11 O 1.35400 * 120.52994 * 180.24066 * 10 7 6 12 12 C 1.42897 * 117.00109 * 174.80777 * 11 10 7 13 13 H 1.09004 * 109.46690 * 324.20845 * 12 11 10 14 14 C 1.50701 * 109.47223 * 84.20938 * 12 11 10 15 15 H 1.07999 * 119.99549 * 240.00099 * 14 12 11 16 16 C 1.37874 * 119.99896 * 59.99964 * 14 12 11 17 17 N 1.31505 * 120.00376 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99839 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47237 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46999 * 119.99919 * 18 16 14 21 21 H 1.48495 * 109.47364 * 239.99993 * 18 16 14 22 22 C 1.50703 * 109.47226 * 204.20910 * 12 11 10 23 23 C 1.38234 * 119.99558 * 324.72859 * 22 12 11 24 24 C 1.38243 * 119.99583 * 179.80906 * 23 22 12 25 25 C 1.38233 * 119.99677 * 0.39826 * 24 23 22 26 26 C 1.38231 * 120.00435 * 359.85103 * 25 24 23 27 27 C 1.38230 * 119.99959 * 359.96022 * 26 25 24 28 28 C 1.38067 * 118.94266 * 0.44790 * 10 7 6 29 29 H 1.09003 * 109.47023 * 239.99522 * 1 2 3 30 30 H 1.08997 * 109.47365 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47275 * 120.00261 * 1 2 3 32 32 H 1.08997 * 109.47403 * 270.00114 * 3 2 1 33 33 H 1.09000 * 109.47501 * 30.00321 * 3 2 1 34 34 H 1.09006 * 109.46738 * 150.00414 * 3 2 1 35 35 H 1.08002 * 119.45384 * 0.02562 * 5 4 2 36 36 H 1.07995 * 120.03327 * 179.97438 * 6 5 4 37 37 H 0.97004 * 120.00488 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.00713 * 359.97438 * 23 22 12 39 39 H 1.08001 * 119.99765 * 180.22476 * 24 23 22 40 40 H 1.08003 * 119.99859 * 179.83583 * 25 24 23 41 41 H 1.07998 * 120.00173 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.00392 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.01172 * 179.79871 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1559 -1.1967 -0.0005 5 6 1.4443 -2.4024 -0.0005 6 6 2.0885 -3.5961 -0.0016 7 6 3.5046 -3.6349 0.0032 8 7 4.1471 -4.7964 0.0073 9 8 3.5189 -5.8398 0.0066 10 6 4.2490 -2.3725 -0.0013 11 8 5.6030 -2.3724 -0.0019 12 6 6.2516 -1.1048 -0.1216 13 1 5.6734 -0.4622 -0.7856 14 6 6.3525 -0.4617 1.2376 15 1 5.8845 0.4947 1.4185 16 6 7.0420 -1.0944 2.2501 17 7 7.6122 -2.2588 2.0297 18 14 7.1677 -0.2970 3.9346 19 1 6.4462 1.0009 3.9230 20 1 6.5597 -1.1916 4.9523 21 1 8.5963 -0.0668 4.2681 22 6 7.6341 -1.2994 -0.6890 23 6 8.3674 -2.4220 -0.3528 24 6 9.6340 -2.6025 -0.8764 25 6 10.1704 -1.6564 -1.7297 26 6 9.4391 -0.5314 -2.0618 27 6 8.1710 -0.3528 -1.5413 28 6 3.5476 -1.1833 -0.0006 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5139 -0.8899 32 1 2.3791 1.5835 -1.0276 33 1 1.6083 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 0.3645 -2.3818 -0.0005 36 1 1.5224 -4.5158 -0.0011 37 1 8.0977 -2.7038 2.7419 38 1 7.9498 -3.1593 0.3168 39 1 10.2055 -3.4813 -0.6166 40 1 11.1610 -1.7961 -2.1367 41 1 9.8584 0.2080 -2.7281 42 1 7.5998 0.5264 -1.8004 43 1 4.0787 -0.2429 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231286358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:45 Heat of formation + Delta-G solvation = 47.800256 kcal Electronic energy + Delta-G solvation = -27838.694370 eV Core-core repulsion = 24044.818330 eV Total energy + Delta-G solvation = -3793.876040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.01359 -38.69248 -38.43217 -37.42791 -35.23623 -33.26038 -30.94968 -30.68340 -30.11109 -29.72538 -28.07515 -27.20939 -26.50093 -23.71294 -23.12302 -21.80264 -21.46428 -20.43259 -20.02203 -18.10172 -17.01918 -16.59033 -16.41557 -15.67490 -15.59312 -15.27995 -15.06253 -14.53020 -14.35254 -14.15675 -14.07411 -13.65843 -13.53546 -13.34969 -12.83542 -12.58405 -12.52766 -12.36493 -12.27877 -12.20896 -12.00770 -11.69902 -11.53615 -11.47476 -11.15890 -10.82964 -10.66473 -10.58045 -10.22099 -9.64134 -9.58805 -9.40652 -9.00177 -8.18956 -7.96332 -7.79504 -7.65125 -7.26495 -6.23965 -4.63359 0.71203 2.02287 2.29705 2.47580 2.94482 2.97954 3.08749 3.17043 3.18696 3.96048 4.10276 4.33244 4.79399 4.85224 4.86060 4.94409 5.09870 5.16812 5.26260 5.28299 5.44184 5.46590 5.61340 5.69190 5.69725 5.77871 5.83889 5.93600 5.98544 6.07960 6.22758 6.32270 6.46803 6.51856 6.68133 6.70027 6.90775 6.95270 7.09533 7.14915 7.32236 7.35822 7.41087 7.54715 7.71475 7.84647 8.11909 8.21436 8.55734 9.14640 9.36495 10.58805 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.004915 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.310595 B = 5695.326418 C = 6224.714114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.615 5.615 3 C 0.080 3.920 4 C 0.316 3.684 5 C -0.270 4.270 6 C 0.027 3.973 7 C -0.210 4.210 8 N -0.281 5.281 9 O -0.003 6.003 10 C 0.324 3.676 11 O -0.258 6.258 12 C 0.231 3.769 13 H 0.039 0.961 14 C -0.550 4.550 15 H 0.070 0.930 16 C 0.084 3.916 17 N -0.836 5.836 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.049 4.049 23 C -0.044 4.044 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.124 4.124 28 C -0.327 4.327 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.269 0.731 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 5.397 -4.625 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.322 5.322 3 C -0.062 4.062 4 C 0.206 3.794 5 C -0.293 4.293 6 C 0.005 3.995 7 C -0.326 4.326 8 N 0.188 4.812 9 O -0.349 6.349 10 C 0.265 3.735 11 O -0.162 6.162 12 C 0.179 3.821 13 H 0.056 0.944 14 C -0.586 4.586 15 H 0.088 0.912 16 C -0.125 4.125 17 N -0.470 5.470 18 Si 0.726 3.274 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.049 4.049 23 C -0.063 4.063 24 C -0.168 4.168 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.142 4.142 28 C -0.351 4.351 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.182 0.818 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.154 6.412 -4.511 11.312 hybrid contribution -0.670 1.008 1.123 1.651 sum -8.824 7.420 -3.388 12.017 Atomic orbital electron populations 1.21740 0.79101 1.02697 1.01847 1.46346 1.05659 1.04040 1.76149 1.21892 0.98260 0.84206 1.01865 1.18060 0.90889 0.85536 0.84892 1.20101 0.99570 0.90864 1.18778 1.21538 0.93487 0.98203 0.86280 1.21222 0.91187 0.93574 1.26664 1.73578 1.30713 0.94971 0.81904 1.93549 1.76759 1.24533 1.40089 1.20368 0.84350 0.90755 0.78010 1.86310 1.12965 1.37946 1.79028 1.19262 0.87164 0.79641 0.96056 0.94360 1.21306 1.36285 1.06701 0.94268 0.91196 1.25074 0.93287 0.94609 0.99506 1.69816 1.30893 1.13960 1.32293 0.86418 0.78262 0.79511 0.83256 1.19493 1.20453 1.20390 1.19668 0.96707 0.94475 0.94063 1.21904 0.92549 0.98537 0.93312 1.21176 0.97260 0.99108 0.99218 1.20884 0.99034 0.95586 1.00283 1.20703 0.95290 0.98276 1.02356 1.20703 0.96058 0.98855 0.98574 1.20801 0.92021 0.99106 1.23151 0.92163 0.90632 0.92162 0.92699 0.91202 0.89889 0.85886 0.83893 0.91977 0.81781 0.87619 0.87919 0.87670 0.87650 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 9.35 59.85 0.56 1.32 16 2 N -0.61 -7.65 3.37 -187.59 -0.63 -8.29 16 3 C 0.08 0.87 10.11 59.85 0.61 1.48 16 4 C 0.32 5.08 6.55 -83.99 -0.55 4.53 16 5 C -0.27 -4.12 9.16 -39.85 -0.36 -4.48 16 6 C 0.03 0.47 9.45 -39.20 -0.37 0.10 16 7 C -0.21 -4.58 6.87 -82.82 -0.57 -5.15 16 8 N -0.28 -6.55 11.47 33.33 0.38 -6.17 16 9 O 0.00 -0.06 18.31 -4.23 -0.08 -0.14 16 10 C 0.32 7.33 6.84 -36.29 -0.25 7.08 16 11 O -0.26 -6.45 8.21 -17.89 -0.15 -6.60 16 12 C 0.23 5.46 2.11 -29.03 -0.06 5.40 16 13 H 0.04 0.84 6.29 -51.93 -0.33 0.51 16 14 C -0.55 -13.65 7.94 -34.44 -0.27 -13.92 16 15 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.08 2.14 5.24 -17.82 -0.09 2.05 16 17 N -0.84 -22.05 8.50 55.43 0.47 -21.58 16 18 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.05 -1.13 4.80 -104.62 -0.50 -1.64 16 23 C -0.04 -1.05 7.46 -39.58 -0.30 -1.35 16 24 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 25 C -0.14 -2.64 10.05 -39.59 -0.40 -3.04 16 26 C -0.15 -2.78 10.05 -39.59 -0.40 -3.17 16 27 C -0.12 -2.55 9.68 -39.59 -0.38 -2.93 16 28 C -0.33 -6.29 7.82 -39.30 -0.31 -6.60 16 29 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 30 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 31 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.58 7.92 -51.93 -0.41 0.16 16 34 H 0.08 1.06 6.11 -51.93 -0.32 0.75 16 35 H 0.12 1.46 6.57 -52.49 -0.34 1.12 16 36 H 0.14 2.13 7.49 -52.49 -0.39 1.74 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.17 4.33 5.50 -52.49 -0.29 4.04 16 39 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.15 2.83 3.69 -52.49 -0.19 2.63 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -29.99 357.88 -8.84 -38.83 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.16 Total: 7.26 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -4.05 Total: -23.84 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.22 Total: -36.04 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.22 Total: -6.74 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.99 -8.84 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231286358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.629 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds