Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99525 * 2 1 4 4 C 1.38179 * 119.99854 * 180.02562 * 2 1 3 5 5 C 1.40007 * 119.45472 * 359.97438 * 4 2 1 6 6 C 1.35635 * 121.09823 * 179.97438 * 5 4 2 7 7 C 1.41668 * 119.92693 * 0.27370 * 6 5 4 8 8 N 1.32729 * 120.52196 * 179.74373 * 7 6 5 9 9 O 1.21792 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.46552 * 118.95213 * 359.53122 * 7 6 5 11 11 O 1.35400 * 120.52994 * 180.24066 * 10 7 6 12 12 C 1.42897 * 117.00109 * 174.80777 * 11 10 7 13 13 H 1.09004 * 109.46690 * 324.20845 * 12 11 10 14 14 C 1.50701 * 109.47223 * 84.20938 * 12 11 10 15 15 H 1.07999 * 119.99549 * 240.00099 * 14 12 11 16 16 C 1.37874 * 119.99896 * 59.99964 * 14 12 11 17 17 N 1.31505 * 120.00376 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99839 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47237 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46999 * 119.99919 * 18 16 14 21 21 H 1.48495 * 109.47364 * 239.99993 * 18 16 14 22 22 C 1.50703 * 109.47226 * 204.20910 * 12 11 10 23 23 C 1.38234 * 119.99558 * 324.72859 * 22 12 11 24 24 C 1.38243 * 119.99583 * 179.80906 * 23 22 12 25 25 C 1.38233 * 119.99677 * 0.39826 * 24 23 22 26 26 C 1.38231 * 120.00435 * 359.85103 * 25 24 23 27 27 C 1.38230 * 119.99959 * 359.96022 * 26 25 24 28 28 C 1.38067 * 118.94266 * 0.44790 * 10 7 6 29 29 H 1.09003 * 109.47023 * 239.99522 * 1 2 3 30 30 H 1.08997 * 109.47365 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47275 * 120.00261 * 1 2 3 32 32 H 1.08997 * 109.47403 * 270.00114 * 3 2 1 33 33 H 1.09000 * 109.47501 * 30.00321 * 3 2 1 34 34 H 1.09006 * 109.46738 * 150.00414 * 3 2 1 35 35 H 1.08002 * 119.45384 * 0.02562 * 5 4 2 36 36 H 1.07995 * 120.03327 * 179.97438 * 6 5 4 37 37 H 0.97004 * 120.00488 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.00713 * 359.97438 * 23 22 12 39 39 H 1.08001 * 119.99765 * 180.22476 * 24 23 22 40 40 H 1.08003 * 119.99859 * 179.83583 * 25 24 23 41 41 H 1.07998 * 120.00173 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.00392 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.01172 * 179.79871 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1559 -1.1967 -0.0005 5 6 1.4443 -2.4024 -0.0005 6 6 2.0885 -3.5961 -0.0016 7 6 3.5046 -3.6349 0.0032 8 7 4.1471 -4.7964 0.0073 9 8 3.5189 -5.8398 0.0066 10 6 4.2490 -2.3725 -0.0013 11 8 5.6030 -2.3724 -0.0019 12 6 6.2516 -1.1048 -0.1216 13 1 5.6734 -0.4622 -0.7856 14 6 6.3525 -0.4617 1.2376 15 1 5.8845 0.4947 1.4185 16 6 7.0420 -1.0944 2.2501 17 7 7.6122 -2.2588 2.0297 18 14 7.1677 -0.2970 3.9346 19 1 6.4462 1.0009 3.9230 20 1 6.5597 -1.1916 4.9523 21 1 8.5963 -0.0668 4.2681 22 6 7.6341 -1.2994 -0.6890 23 6 8.3674 -2.4220 -0.3528 24 6 9.6340 -2.6025 -0.8764 25 6 10.1704 -1.6564 -1.7297 26 6 9.4391 -0.5314 -2.0618 27 6 8.1710 -0.3528 -1.5413 28 6 3.5476 -1.1833 -0.0006 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5139 -0.8899 32 1 2.3791 1.5835 -1.0276 33 1 1.6083 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 0.3645 -2.3818 -0.0005 36 1 1.5224 -4.5158 -0.0011 37 1 8.0977 -2.7038 2.7419 38 1 7.9498 -3.1593 0.3168 39 1 10.2055 -3.4813 -0.6166 40 1 11.1610 -1.7961 -2.1367 41 1 9.8584 0.2080 -2.7281 42 1 7.5998 0.5264 -1.8004 43 1 4.0787 -0.2429 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231286358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = 30.955654 kcal Electronic energy + Delta-G solvation = -27839.424807 eV Core-core repulsion = 24044.818330 eV Total energy + Delta-G solvation = -3794.606477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49492 -40.35420 -39.85838 -38.95843 -36.55495 -35.05370 -32.60677 -32.03256 -31.58667 -31.26020 -29.17173 -28.85667 -27.76681 -25.43644 -24.38959 -23.34905 -22.99652 -21.92848 -21.55319 -19.60992 -18.69760 -18.03274 -17.94372 -17.18740 -17.08462 -16.74106 -16.35411 -15.93359 -15.85724 -15.63486 -15.50681 -15.36344 -15.12493 -14.89232 -14.17950 -13.89855 -13.82799 -13.76455 -13.54969 -13.37731 -13.24278 -13.15105 -13.00604 -12.93514 -12.89033 -12.44746 -12.26920 -12.04071 -11.86507 -11.30983 -11.19026 -10.91080 -10.77336 -9.78883 -9.56258 -9.35207 -9.27725 -8.52861 -8.09816 -6.56272 -0.73602 0.60556 0.68364 0.87192 1.28691 1.31266 1.40408 1.51979 1.92588 2.24833 2.38305 2.85552 3.06829 3.21798 3.58216 3.80077 3.95188 4.05256 4.16252 4.24362 4.27917 4.34896 4.38805 4.43443 4.48479 4.55713 4.62403 4.65886 4.69784 4.80620 4.86922 4.90934 4.98566 5.07597 5.16961 5.30691 5.32214 5.46389 5.50733 5.60803 5.74800 5.75848 5.98855 6.01324 6.15108 6.21189 6.35987 6.47814 6.81800 7.23433 7.87340 8.68887 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.004915 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.310595 B = 5695.326418 C = 6224.714114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.072 3.928 4 C 0.326 3.674 5 C -0.253 4.253 6 C 0.026 3.974 7 C -0.249 4.249 8 N -0.321 5.321 9 O -0.001 6.001 10 C 0.285 3.715 11 O -0.290 6.290 12 C 0.234 3.766 13 H 0.043 0.957 14 C -0.556 4.556 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.859 5.859 18 Si 0.952 3.048 19 H -0.258 1.258 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.077 4.077 23 C -0.070 4.070 24 C -0.161 4.161 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.339 4.339 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.262 0.738 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.124 0.876 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 8.211 -5.577 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.303 5.303 3 C -0.070 4.070 4 C 0.211 3.789 5 C -0.275 4.275 6 C 0.004 3.996 7 C -0.367 4.367 8 N 0.145 4.855 9 O -0.343 6.343 10 C 0.228 3.772 11 O -0.196 6.196 12 C 0.182 3.818 13 H 0.061 0.939 14 C -0.592 4.592 15 H 0.089 0.911 16 C -0.168 4.168 17 N -0.494 5.494 18 Si 0.777 3.223 19 H -0.182 1.182 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.078 4.078 23 C -0.089 4.089 24 C -0.179 4.179 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.364 4.364 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.184 0.816 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.279 9.243 -5.472 14.867 hybrid contribution -0.240 0.306 1.325 1.381 sum -10.519 9.549 -4.147 14.800 Atomic orbital electron populations 1.22151 0.76002 1.05346 1.03048 1.46794 1.07624 1.03248 1.72646 1.22097 0.97827 0.84185 1.02931 1.18197 0.89979 0.87561 0.83182 1.20518 1.01550 0.89427 1.16049 1.21780 0.91554 1.00282 0.85967 1.21465 0.93307 0.92771 1.29160 1.73467 1.32192 0.96008 0.83788 1.93468 1.76685 1.24195 1.39927 1.20835 0.83821 0.92421 0.80144 1.86242 1.14663 1.38154 1.80577 1.19219 0.87573 0.79486 0.95571 0.93917 1.21515 1.35834 1.06626 0.95217 0.91051 1.25778 0.93502 0.95142 1.02361 1.70071 1.31822 1.15006 1.32461 0.85604 0.78058 0.78972 0.79681 1.18152 1.21360 1.20369 1.19887 0.96849 0.95399 0.95628 1.21651 0.94198 0.98623 0.94464 1.21385 0.96393 1.00452 0.99716 1.21301 1.00477 0.94600 0.98808 1.21185 0.94209 0.98769 1.01674 1.21013 0.97248 0.98800 0.98051 1.20790 0.93623 0.97730 1.24227 0.91080 0.87545 0.90642 0.91338 0.87666 0.92374 0.81360 0.81613 0.92779 0.85386 0.86418 0.84040 0.83554 0.85780 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.35 127.77 1.19 2.08 16 2 N -0.60 -12.74 3.37 -747.40 -2.52 -15.26 16 3 C 0.07 1.34 10.11 127.77 1.29 2.63 16 4 C 0.33 9.87 6.55 38.80 0.25 10.12 16 5 C -0.25 -7.02 9.16 22.10 0.20 -6.82 16 6 C 0.03 0.89 9.45 22.51 0.21 1.11 16 7 C -0.25 -11.40 6.87 42.02 0.29 -11.11 16 8 N -0.32 -15.98 11.47 -48.46 -0.56 -16.53 16 9 O 0.00 -0.05 18.31 -5.22 -0.10 -0.14 16 10 C 0.28 13.63 6.84 24.40 0.17 13.80 16 11 O -0.29 -15.63 8.21 -86.93 -0.71 -16.35 16 12 C 0.23 11.69 2.11 29.10 0.06 11.75 16 13 H 0.04 1.98 6.29 -2.39 -0.01 1.97 16 14 C -0.56 -28.77 7.94 25.60 0.20 -28.56 16 15 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 16 C 0.04 2.01 5.24 84.66 0.44 2.45 16 17 N -0.86 -48.39 8.50 21.44 0.18 -48.20 16 18 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.08 -3.76 4.80 -19.86 -0.10 -3.85 16 23 C -0.07 -3.55 7.46 22.27 0.17 -3.38 16 24 C -0.16 -6.87 10.05 22.27 0.22 -6.64 16 25 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 26 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16 27 C -0.13 -5.44 9.68 22.27 0.22 -5.22 16 28 C -0.34 -13.35 7.82 22.45 0.18 -13.17 16 29 H 0.07 0.77 7.89 -2.39 -0.02 0.76 16 30 H 0.11 0.68 7.79 -2.39 -0.02 0.66 16 31 H 0.08 0.75 7.89 -2.39 -0.02 0.74 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.26 7.92 -2.39 -0.02 1.24 16 34 H 0.06 1.43 6.11 -2.38 -0.01 1.41 16 35 H 0.17 3.11 6.57 -2.91 -0.02 3.09 16 36 H 0.17 4.74 7.49 -2.91 -0.02 4.72 16 37 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 38 H 0.13 7.40 5.50 -2.91 -0.02 7.38 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 42 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.15 5.68 3.69 -2.91 -0.01 5.67 16 Total: -1.00 -72.33 357.88 4.82 -67.51 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 1.04 Total: 28.45 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 5.45 Total: -44.14 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.89 Total: -79.99 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.81 Total: -16.49 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.33 4.82 -67.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231286358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.464 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds