Wall clock time and date at job start Tue Mar 31 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46495 * 119.99846 * 2 1 4 4 C 1.38181 * 119.99782 * 180.02562 * 2 1 3 5 5 C 1.40003 * 119.45379 * 185.73247 * 4 2 1 6 6 C 1.35638 * 121.10081 * 179.97438 * 5 4 2 7 7 C 1.41666 * 119.92507 * 359.77721 * 6 5 4 8 8 N 1.32739 * 120.51861 * 180.25615 * 7 6 5 9 9 O 1.21799 * 120.00478 * 0.19322 * 8 7 6 10 10 C 1.46541 * 118.95268 * 0.44092 * 7 6 5 11 11 O 1.35407 * 120.52479 * 179.81214 * 10 7 6 12 12 C 1.42904 * 116.99624 * 184.79601 * 11 10 7 13 13 H 1.08995 * 109.47184 * 35.43847 * 12 11 10 14 14 C 1.50698 * 109.46870 * 275.44043 * 12 11 10 15 15 H 1.08005 * 120.00428 * 332.17746 * 14 12 11 16 16 C 1.37872 * 120.00168 * 152.18242 * 14 12 11 17 17 N 1.31515 * 120.00579 * 183.76892 * 16 14 12 18 18 Si 1.86805 * 119.99821 * 3.76795 * 16 14 12 19 19 H 1.48504 * 109.47040 * 84.95620 * 18 16 14 20 20 H 1.48499 * 109.47234 * 204.95886 * 18 16 14 21 21 H 1.48501 * 109.47124 * 324.95662 * 18 16 14 22 22 C 1.50701 * 109.46934 * 155.44236 * 12 11 10 23 23 C 1.38237 * 119.99695 * 37.85009 * 22 12 11 24 24 C 1.38245 * 119.99613 * 179.79067 * 23 22 12 25 25 C 1.38240 * 119.99823 * 0.43890 * 24 23 22 26 26 C 1.38236 * 119.99750 * 359.81609 * 25 24 23 27 27 C 1.38230 * 120.00026 * 218.12378 * 22 12 11 28 28 C 1.38063 * 118.94462 * 359.54711 * 10 7 6 29 29 H 1.09002 * 109.46803 * 185.43440 * 1 2 3 30 30 H 1.09002 * 109.46722 * 305.43030 * 1 2 3 31 31 H 1.08991 * 109.46946 * 65.42841 * 1 2 3 32 32 H 1.09002 * 109.47235 * 269.99731 * 3 2 1 33 33 H 1.08998 * 109.47769 * 29.99964 * 3 2 1 34 34 H 1.09004 * 109.46818 * 150.00106 * 3 2 1 35 35 H 1.08004 * 119.44954 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.03400 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00407 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00319 * 359.97438 * 23 22 12 39 39 H 1.07997 * 119.99864 * 180.27209 * 24 23 22 40 40 H 1.07996 * 119.99958 * 179.83663 * 25 24 23 41 41 H 1.08001 * 119.99663 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.99860 * 359.97438 * 27 22 12 43 43 H 1.07996 * 120.00970 * 180.23189 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1560 -1.1967 -0.0005 5 6 3.5506 -1.1865 0.1212 6 6 4.2620 -2.3414 0.1251 7 6 3.5924 -3.5844 0.0093 8 7 4.2765 -4.7219 0.0169 9 8 5.4893 -4.7025 0.1276 10 6 2.1330 -3.5943 -0.1231 11 8 1.4609 -4.7640 -0.2397 12 6 0.0529 -4.6829 -0.4701 13 1 -0.1625 -3.8232 -1.1045 14 6 -0.6634 -4.5276 0.8466 15 1 -0.2253 -4.9257 1.7500 16 6 -1.8781 -3.8775 0.8981 17 7 -2.4679 -3.6765 2.0563 18 14 -2.6863 -3.2820 -0.6773 19 1 -3.4655 -4.3911 -1.2838 20 1 -3.5953 -2.1487 -0.3696 21 1 -1.6403 -2.8326 -1.6309 22 6 -0.4176 -5.9415 -1.1526 23 6 0.1252 -7.1630 -0.8003 24 6 -0.3095 -8.3180 -1.4233 25 6 -1.2806 -8.2503 -2.4049 26 6 -1.8195 -7.0281 -2.7608 27 6 -1.3880 -5.8737 -2.1347 28 6 1.4537 -2.3923 -0.1215 29 1 -0.3633 -1.0231 0.0973 30 1 -0.3633 0.5958 0.8374 31 1 -0.3633 0.4273 -0.9345 32 1 2.3792 1.5834 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1383 0.5138 35 1 4.0687 -0.2434 0.2136 36 1 5.3375 -2.3134 0.2205 37 1 -3.3224 -3.2187 2.0925 38 1 0.8868 -7.2154 -0.0363 39 1 0.1114 -9.2729 -1.1450 40 1 -1.6183 -9.1523 -2.8935 41 1 -2.5785 -6.9753 -3.5273 42 1 -1.8091 -4.9189 -2.4127 43 1 0.3779 -2.3797 -0.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231286359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:48 Heat of formation + Delta-G solvation = 51.022061 kcal Electronic energy + Delta-G solvation = -27838.056467 eV Core-core repulsion = 24044.320135 eV Total energy + Delta-G solvation = -3793.736332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26880 -39.06107 -38.62572 -37.81841 -35.37341 -33.33844 -31.58832 -30.85478 -30.47505 -30.20811 -28.14984 -27.54197 -26.62684 -23.71234 -23.24394 -22.24688 -21.86967 -20.47453 -20.20963 -18.17341 -17.54679 -16.94342 -16.74950 -16.04239 -15.86454 -15.37997 -15.17277 -14.78646 -14.58679 -14.40207 -14.29717 -14.01791 -13.74706 -13.36816 -13.12460 -12.83462 -12.75901 -12.57301 -12.50938 -12.43431 -12.32064 -12.02238 -11.89249 -11.61812 -11.27738 -11.03264 -10.80046 -10.61350 -10.26766 -10.01649 -9.82680 -9.61265 -9.08042 -8.41316 -8.39194 -8.18714 -7.97789 -7.37880 -6.54954 -4.59529 0.52145 1.82333 1.87304 1.93251 2.79608 2.83841 2.89095 2.94171 3.00102 3.58826 3.91517 4.13393 4.34195 4.73396 4.75495 4.77478 4.99533 5.06832 5.18651 5.25224 5.34163 5.38838 5.41748 5.45418 5.49617 5.52517 5.63363 5.70792 5.76855 5.82846 5.93124 6.07348 6.11790 6.17984 6.39034 6.46439 6.52967 6.56368 6.76963 6.93337 6.95028 7.01032 7.01988 7.17651 7.28102 7.51778 7.76440 8.05247 8.56052 9.00016 9.13526 10.56159 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.005806 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.632511 B = 4821.187121 C = 6765.196675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.083 3.917 4 C 0.321 3.679 5 C -0.266 4.266 6 C 0.029 3.971 7 C -0.206 4.206 8 N -0.289 5.289 9 O 0.008 5.992 10 C 0.316 3.684 11 O -0.278 6.278 12 C 0.202 3.798 13 H 0.052 0.948 14 C -0.533 4.533 15 H 0.091 0.909 16 C 0.089 3.911 17 N -0.869 5.869 18 Si 0.847 3.153 19 H -0.256 1.256 20 H -0.279 1.279 21 H -0.261 1.261 22 C -0.046 4.046 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.139 4.139 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.319 4.319 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.272 0.728 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 7.409 -6.971 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.315 5.315 3 C -0.059 4.059 4 C 0.210 3.790 5 C -0.289 4.289 6 C 0.007 3.993 7 C -0.323 4.323 8 N 0.182 4.818 9 O -0.341 6.341 10 C 0.260 3.740 11 O -0.185 6.185 12 C 0.148 3.852 13 H 0.070 0.930 14 C -0.570 4.570 15 H 0.109 0.891 16 C -0.117 4.117 17 N -0.504 5.504 18 Si 0.673 3.327 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.047 4.047 23 C -0.112 4.112 24 C -0.139 4.139 25 C -0.157 4.157 26 C -0.138 4.138 27 C -0.150 4.150 28 C -0.343 4.343 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.923 6.798 -7.026 10.204 hybrid contribution -0.758 1.382 -0.514 1.658 sum 2.165 8.181 -7.540 11.334 Atomic orbital electron populations 1.22023 0.78457 1.04966 1.01598 1.46397 1.06166 1.03758 1.75154 1.21827 0.97676 0.84586 1.01847 1.18104 0.91122 0.85479 0.84253 1.20221 0.91614 0.99360 1.17706 1.21541 1.00458 0.91020 0.86312 1.21125 0.91490 0.93333 1.26326 1.73522 1.02890 1.22614 0.82754 1.93571 1.06990 1.94107 1.39420 1.20218 0.88730 0.85171 0.79858 1.85976 1.24604 1.27388 1.80537 1.19794 0.75498 0.92745 0.97156 0.93049 1.21171 1.05544 1.38088 0.92221 0.89079 1.24840 0.96426 0.94553 0.95876 1.69850 1.16817 1.39793 1.23904 0.87496 0.80863 0.80059 0.84237 1.18047 1.20463 1.18631 1.20067 0.95801 0.95843 0.92997 1.20953 0.99443 0.91527 0.99242 1.21100 0.97710 0.98069 0.97040 1.20954 0.98512 0.97152 0.99057 1.20905 1.00109 0.92630 1.00193 1.20874 0.98738 0.98356 0.97041 1.20954 1.01838 0.90021 1.21491 0.89093 0.91378 0.92268 0.92587 0.90952 0.90455 0.85261 0.83479 0.91731 0.85746 0.86493 0.86745 0.86712 0.87306 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.56 59.85 0.63 1.60 16 2 N -0.61 -8.23 3.37 -187.58 -0.63 -8.86 16 3 C 0.08 0.75 10.32 59.84 0.62 1.37 16 4 C 0.32 5.29 6.53 -83.99 -0.55 4.74 16 5 C -0.27 -3.90 9.11 -39.85 -0.36 -4.27 16 6 C 0.03 0.47 9.45 -39.20 -0.37 0.10 16 7 C -0.21 -4.23 6.87 -82.82 -0.57 -4.80 16 8 N -0.29 -6.18 11.48 33.33 0.38 -5.80 16 9 O 0.01 0.15 18.31 -4.23 -0.08 0.07 16 10 C 0.32 6.94 6.84 -36.30 -0.25 6.69 16 11 O -0.28 -6.59 8.90 -17.91 -0.16 -6.75 16 12 C 0.20 4.73 1.56 -29.04 -0.05 4.69 16 13 H 0.05 1.19 3.59 -51.93 -0.19 1.00 16 14 C -0.53 -14.06 8.29 -34.44 -0.29 -14.34 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 17 N -0.87 -24.04 13.96 55.43 0.77 -23.26 16 18 Si 0.85 18.62 23.58 -169.99 -4.01 14.61 16 19 H -0.26 -5.59 6.62 56.52 0.37 -5.21 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.26 -5.32 6.09 56.52 0.34 -4.97 16 22 C -0.05 -1.03 4.85 -104.62 -0.51 -1.53 16 23 C -0.09 -1.94 9.36 -39.58 -0.37 -2.31 16 24 C -0.12 -2.13 10.05 -39.58 -0.40 -2.52 16 25 C -0.14 -2.27 10.05 -39.58 -0.40 -2.67 16 26 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.13 -2.68 8.23 -39.59 -0.33 -3.01 16 28 C -0.32 -6.37 7.89 -39.30 -0.31 -6.68 16 29 H 0.09 1.51 5.30 -51.93 -0.28 1.23 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.08 0.63 5.89 -51.93 -0.31 0.32 16 35 H 0.13 1.43 5.90 -52.48 -0.31 1.12 16 36 H 0.15 1.99 7.49 -52.48 -0.39 1.59 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.12 2.64 7.71 -52.49 -0.40 2.23 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 2.16 4.98 -52.49 -0.26 1.90 16 43 H 0.16 3.25 3.07 -52.49 -0.16 3.09 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -30.57 351.87 -7.30 -37.87 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.90 Total: 10.03 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.99 Total: -23.23 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.52 Total: -37.92 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.24 Total: -6.68 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.01 Total: 14.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.57 -7.30 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231286359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.896 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds