Wall clock time and date at job start Tue Mar 31 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46495 * 119.99846 * 2 1 4 4 C 1.38181 * 119.99782 * 180.02562 * 2 1 3 5 5 C 1.40003 * 119.45379 * 185.73247 * 4 2 1 6 6 C 1.35638 * 121.10081 * 179.97438 * 5 4 2 7 7 C 1.41666 * 119.92507 * 359.77721 * 6 5 4 8 8 N 1.32739 * 120.51861 * 180.25615 * 7 6 5 9 9 O 1.21799 * 120.00478 * 0.19322 * 8 7 6 10 10 C 1.46541 * 118.95268 * 0.44092 * 7 6 5 11 11 O 1.35407 * 120.52479 * 179.81214 * 10 7 6 12 12 C 1.42904 * 116.99624 * 184.79601 * 11 10 7 13 13 H 1.08995 * 109.47184 * 35.43847 * 12 11 10 14 14 C 1.50698 * 109.46870 * 275.44043 * 12 11 10 15 15 H 1.08005 * 120.00428 * 332.17746 * 14 12 11 16 16 C 1.37872 * 120.00168 * 152.18242 * 14 12 11 17 17 N 1.31515 * 120.00579 * 183.76892 * 16 14 12 18 18 Si 1.86805 * 119.99821 * 3.76795 * 16 14 12 19 19 H 1.48504 * 109.47040 * 84.95620 * 18 16 14 20 20 H 1.48499 * 109.47234 * 204.95886 * 18 16 14 21 21 H 1.48501 * 109.47124 * 324.95662 * 18 16 14 22 22 C 1.50701 * 109.46934 * 155.44236 * 12 11 10 23 23 C 1.38237 * 119.99695 * 37.85009 * 22 12 11 24 24 C 1.38245 * 119.99613 * 179.79067 * 23 22 12 25 25 C 1.38240 * 119.99823 * 0.43890 * 24 23 22 26 26 C 1.38236 * 119.99750 * 359.81609 * 25 24 23 27 27 C 1.38230 * 120.00026 * 218.12378 * 22 12 11 28 28 C 1.38063 * 118.94462 * 359.54711 * 10 7 6 29 29 H 1.09002 * 109.46803 * 185.43440 * 1 2 3 30 30 H 1.09002 * 109.46722 * 305.43030 * 1 2 3 31 31 H 1.08991 * 109.46946 * 65.42841 * 1 2 3 32 32 H 1.09002 * 109.47235 * 269.99731 * 3 2 1 33 33 H 1.08998 * 109.47769 * 29.99964 * 3 2 1 34 34 H 1.09004 * 109.46818 * 150.00106 * 3 2 1 35 35 H 1.08004 * 119.44954 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.03400 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00407 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00319 * 359.97438 * 23 22 12 39 39 H 1.07997 * 119.99864 * 180.27209 * 24 23 22 40 40 H 1.07996 * 119.99958 * 179.83663 * 25 24 23 41 41 H 1.08001 * 119.99663 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.99860 * 359.97438 * 27 22 12 43 43 H 1.07996 * 120.00970 * 180.23189 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1560 -1.1967 -0.0005 5 6 3.5506 -1.1865 0.1212 6 6 4.2620 -2.3414 0.1251 7 6 3.5924 -3.5844 0.0093 8 7 4.2765 -4.7219 0.0169 9 8 5.4893 -4.7025 0.1276 10 6 2.1330 -3.5943 -0.1231 11 8 1.4609 -4.7640 -0.2397 12 6 0.0529 -4.6829 -0.4701 13 1 -0.1625 -3.8232 -1.1045 14 6 -0.6634 -4.5276 0.8466 15 1 -0.2253 -4.9257 1.7500 16 6 -1.8781 -3.8775 0.8981 17 7 -2.4679 -3.6765 2.0563 18 14 -2.6863 -3.2820 -0.6773 19 1 -3.4655 -4.3911 -1.2838 20 1 -3.5953 -2.1487 -0.3696 21 1 -1.6403 -2.8326 -1.6309 22 6 -0.4176 -5.9415 -1.1526 23 6 0.1252 -7.1630 -0.8003 24 6 -0.3095 -8.3180 -1.4233 25 6 -1.2806 -8.2503 -2.4049 26 6 -1.8195 -7.0281 -2.7608 27 6 -1.3880 -5.8737 -2.1347 28 6 1.4537 -2.3923 -0.1215 29 1 -0.3633 -1.0231 0.0973 30 1 -0.3633 0.5958 0.8374 31 1 -0.3633 0.4273 -0.9345 32 1 2.3792 1.5834 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1383 0.5138 35 1 4.0687 -0.2434 0.2136 36 1 5.3375 -2.3134 0.2205 37 1 -3.3224 -3.2187 2.0925 38 1 0.8868 -7.2154 -0.0363 39 1 0.1114 -9.2729 -1.1450 40 1 -1.6183 -9.1523 -2.8935 41 1 -2.5785 -6.9753 -3.5273 42 1 -1.8091 -4.9189 -2.4127 43 1 0.3779 -2.3797 -0.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231286359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:47 Heat of formation + Delta-G solvation = 31.183381 kcal Electronic energy + Delta-G solvation = -27838.916737 eV Core-core repulsion = 24044.320135 eV Total energy + Delta-G solvation = -3794.596602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74568 -40.62487 -40.04904 -39.27889 -36.67854 -35.23294 -33.23198 -32.19046 -31.91899 -31.59572 -29.44088 -29.07165 -27.88706 -25.43340 -24.53645 -23.72335 -23.29011 -21.89648 -21.73021 -19.68866 -19.43063 -18.47025 -18.17565 -17.43901 -17.22720 -16.90797 -16.46782 -16.20245 -16.03553 -15.91399 -15.62633 -15.46183 -15.32153 -15.05545 -14.87204 -14.35877 -14.06367 -13.92150 -13.83045 -13.52647 -13.45743 -13.31605 -13.15347 -13.03431 -12.82377 -12.65036 -12.24073 -12.11807 -11.92852 -11.73988 -11.52414 -11.03642 -10.89857 -9.92309 -9.86283 -9.67916 -9.53176 -8.60752 -8.57147 -6.68111 -0.85973 0.38898 0.44029 0.45918 1.07428 1.15311 1.21731 1.40496 1.80760 2.03794 2.05352 2.71517 2.71750 2.92194 3.38846 3.64541 3.73880 3.84980 3.91994 4.04171 4.08991 4.13169 4.17368 4.25721 4.31897 4.34413 4.40692 4.49337 4.61365 4.62700 4.68136 4.68623 4.81088 4.86150 4.95905 5.06212 5.08295 5.10383 5.21610 5.42663 5.49859 5.55259 5.66118 5.79318 5.91074 6.06742 6.09126 6.26168 6.42734 6.96770 7.74376 8.58773 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.005806 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.632511 B = 4821.187121 C = 6765.196675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.599 5.599 3 C 0.072 3.928 4 C 0.324 3.676 5 C -0.249 4.249 6 C 0.032 3.968 7 C -0.242 4.242 8 N -0.330 5.330 9 O 0.036 5.964 10 C 0.274 3.726 11 O -0.305 6.305 12 C 0.216 3.784 13 H 0.052 0.948 14 C -0.538 4.538 15 H 0.030 0.970 16 C 0.045 3.955 17 N -0.918 5.918 18 Si 0.907 3.093 19 H -0.246 1.246 20 H -0.265 1.265 21 H -0.243 1.243 22 C -0.080 4.080 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.151 4.151 28 C -0.341 4.341 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.277 0.723 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 9.381 -9.704 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.301 5.301 3 C -0.068 4.068 4 C 0.209 3.791 5 C -0.271 4.271 6 C 0.010 3.990 7 C -0.358 4.358 8 N 0.146 4.854 9 O -0.318 6.318 10 C 0.220 3.780 11 O -0.214 6.214 12 C 0.162 3.838 13 H 0.069 0.931 14 C -0.575 4.575 15 H 0.048 0.952 16 C -0.157 4.157 17 N -0.555 5.555 18 Si 0.730 3.270 19 H -0.171 1.171 20 H -0.190 1.190 21 H -0.167 1.167 22 C -0.080 4.080 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.169 4.169 28 C -0.365 4.365 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.172 0.828 42 H 0.129 0.871 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.912 8.817 -9.766 13.476 hybrid contribution -0.650 0.850 0.397 1.142 sum 2.262 9.668 -9.369 13.651 Atomic orbital electron populations 1.22131 0.78628 1.03186 1.03875 1.46777 1.06534 1.04339 1.72479 1.22238 0.98263 0.82557 1.03788 1.18275 0.92154 0.85460 0.83193 1.20657 0.90563 1.00759 1.15144 1.21874 1.01888 0.89768 0.85464 1.21350 0.90992 0.94967 1.28513 1.73507 1.03378 1.23991 0.84521 1.93494 1.06352 1.94090 1.37827 1.20699 0.89803 0.85276 0.82199 1.85923 1.24516 1.28995 1.81930 1.19535 0.75310 0.93712 0.95292 0.93074 1.21064 1.06190 1.38321 0.91952 0.95154 1.25579 0.96468 0.94179 0.99457 1.69992 1.17609 1.41358 1.26524 0.86526 0.80210 0.80133 0.80146 1.17054 1.18990 1.16745 1.20130 0.97510 0.95472 0.94936 1.20948 1.00074 0.92901 1.00028 1.21460 0.97676 0.97889 0.96610 1.21487 0.96642 0.98592 0.97583 1.21402 1.00140 0.91808 1.00019 1.21071 0.98665 0.99910 0.97267 1.20937 1.01263 0.91125 1.23136 0.92873 0.89404 0.89597 0.90508 0.88648 0.88895 0.80409 0.80379 0.91374 0.88341 0.83553 0.82066 0.82785 0.87129 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.63 10.56 127.77 1.35 2.98 16 2 N -0.60 -14.68 3.37 -747.39 -2.52 -17.20 16 3 C 0.07 0.96 10.32 127.77 1.32 2.28 16 4 C 0.32 10.40 6.53 38.80 0.25 10.65 16 5 C -0.25 -6.66 9.11 22.10 0.20 -6.46 16 6 C 0.03 1.00 9.45 22.51 0.21 1.22 16 7 C -0.24 -10.36 6.87 42.02 0.29 -10.07 16 8 N -0.33 -14.82 11.48 -48.46 -0.56 -15.38 16 9 O 0.04 1.39 18.31 -5.23 -0.10 1.30 16 10 C 0.27 13.00 6.84 24.39 0.17 13.16 16 11 O -0.30 -15.98 8.90 -87.01 -0.77 -16.75 16 12 C 0.22 10.95 1.56 29.10 0.05 11.00 16 13 H 0.05 2.53 3.59 -2.39 -0.01 2.52 16 14 C -0.54 -31.16 8.29 25.60 0.21 -30.95 16 15 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 16 C 0.05 2.50 5.47 84.65 0.46 2.96 16 17 N -0.92 -54.03 13.96 21.45 0.30 -53.73 16 18 Si 0.91 39.55 23.58 68.60 1.62 41.17 16 19 H -0.25 -10.31 6.62 99.48 0.66 -9.65 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.24 -9.75 6.09 99.48 0.61 -9.14 16 22 C -0.08 -3.73 4.85 -19.87 -0.10 -3.82 16 23 C -0.12 -5.34 9.36 22.27 0.21 -5.13 16 24 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 25 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 26 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 27 C -0.15 -6.10 8.23 22.27 0.18 -5.91 16 28 C -0.34 -14.35 7.89 22.45 0.18 -14.17 16 29 H 0.05 1.80 5.30 -2.39 -0.01 1.79 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.91 8.07 -2.39 -0.02 0.89 16 34 H 0.09 0.99 5.89 -2.38 -0.01 0.98 16 35 H 0.18 2.98 5.90 -2.91 -0.02 2.96 16 36 H 0.18 4.36 7.49 -2.91 -0.02 4.33 16 37 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.10 4.69 7.71 -2.91 -0.02 4.67 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.11 4.30 4.98 -2.91 -0.01 4.29 16 43 H 0.14 6.19 3.07 -2.91 -0.01 6.18 16 Total: -1.00 -77.01 351.87 4.54 -72.47 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.91 Total: 31.20 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 5.66 Total: -43.08 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.77 Total: -86.30 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.87 Total: -15.46 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.62 Total: 41.17 kcal Total: -77.01 4.54 -72.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231286359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.652 kcal (2) G-P(sol) polarization free energy of solvation -77.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds