Wall clock time and date at job start Tue Mar 31 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34680 * 116.99857 * 2 1 4 4 O 1.21429 * 119.99935 * 0.02562 * 3 2 1 5 5 C 1.48071 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.39345 * 119.72759 * 179.97438 * 5 3 2 7 7 C 1.38585 * 119.05464 * 179.97438 * 6 5 3 8 8 C 1.38628 * 118.48961 * 0.02562 * 7 6 5 9 9 C 1.38585 * 119.35978 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.54555 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.47262 * 95.00110 * 10 9 8 12 12 C 1.36938 * 119.99808 * 270.00151 * 11 10 9 13 13 H 1.08001 * 119.99681 * 320.82934 * 12 11 10 14 14 C 1.38807 * 120.00271 * 140.83273 * 12 11 10 15 15 N 1.31626 * 119.99945 * 336.86157 * 14 12 11 16 16 Si 1.86796 * 120.00322 * 156.85470 * 14 12 11 17 17 H 1.48508 * 109.47150 * 60.00340 * 16 14 12 18 18 H 1.48494 * 109.47328 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47228 * 300.00665 * 16 14 12 20 20 C 1.46501 * 120.00076 * 89.99621 * 11 10 9 21 21 C 1.50694 * 109.46997 * 84.14302 * 20 11 10 22 22 C 1.38236 * 120.00276 * 85.13487 * 21 20 11 23 23 C 1.38236 * 120.00302 * 179.97438 * 22 21 20 24 24 C 1.38237 * 120.00044 * 0.08470 * 23 22 21 25 25 C 1.38234 * 119.99687 * 359.87471 * 24 23 22 26 26 C 1.38236 * 120.00263 * 0.08014 * 25 24 23 27 27 N 1.31501 * 120.90601 * 0.27277 * 9 8 7 28 28 H 1.09003 * 109.46657 * 299.99809 * 1 2 3 29 29 H 1.08992 * 109.47348 * 59.99817 * 1 2 3 30 30 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.47184 * 0.02666 * 6 5 3 32 32 H 1.07998 * 120.75746 * 179.97438 * 7 6 5 33 33 H 1.08002 * 120.32169 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47672 * 335.00065 * 10 9 8 35 35 H 1.09000 * 109.47128 * 214.99941 * 10 9 8 36 36 H 0.96998 * 120.00249 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47051 * 324.14073 * 20 11 10 38 38 H 1.08994 * 109.46921 * 204.14228 * 20 11 10 39 39 H 1.07996 * 119.99737 * 359.69938 * 22 21 20 40 40 H 1.08000 * 120.00046 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99979 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.99871 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.00126 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 0.0005 5 6 3.5421 1.2776 -0.0006 6 6 4.1687 2.5222 -0.0011 7 6 5.5534 2.5786 -0.0011 8 6 6.2637 1.3880 -0.0011 9 6 5.5745 0.1857 -0.0016 10 6 6.3424 -1.1109 -0.0022 11 7 6.4877 -1.5931 1.3735 12 6 7.5721 -1.2165 2.1201 13 1 8.5468 -1.1477 1.6601 14 6 7.4186 -0.9232 3.4682 15 7 6.2418 -0.5603 3.9329 16 14 8.8820 -1.0439 4.6228 17 1 9.9465 -0.1117 4.1719 18 1 8.4576 -0.6827 5.9992 19 1 9.4053 -2.4336 4.6152 20 6 5.4727 -2.4781 1.9505 21 6 5.7644 -3.9025 1.5543 22 6 6.6517 -4.6587 2.2970 23 6 6.9189 -5.9655 1.9338 24 6 6.3001 -6.5155 0.8268 25 6 5.4122 -5.7595 0.0845 26 6 5.1443 -4.4531 0.4483 27 7 4.2598 0.1608 -0.0075 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5836 3.4300 -0.0007 32 1 6.0676 3.5283 -0.0019 33 1 7.3437 1.3974 -0.0007 34 1 7.3290 -0.9489 -0.4365 35 1 5.8032 -1.8522 -0.5920 36 1 6.1346 -0.3550 4.8748 37 1 4.4884 -2.1922 1.5801 38 1 5.4911 -2.3922 3.0369 39 1 7.1396 -4.2272 3.1584 40 1 7.6125 -6.5562 2.5139 41 1 6.5092 -7.5363 0.5428 42 1 4.9283 -6.1894 -0.7801 43 1 4.4508 -3.8623 -0.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231427749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:59 Heat of formation + Delta-G solvation = 1.500548 kcal Electronic energy + Delta-G solvation = -27342.848964 eV Core-core repulsion = 23546.965218 eV Total energy + Delta-G solvation = -3795.883746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.44505 -39.24289 -38.53344 -36.29375 -35.63654 -32.32123 -32.06888 -31.53840 -30.22951 -29.93907 -27.77429 -26.32433 -25.57718 -24.31888 -22.69830 -21.86882 -21.37937 -20.77105 -19.95697 -17.87714 -16.99845 -16.79651 -16.19588 -16.01958 -15.66761 -15.37495 -14.96560 -14.50869 -14.34934 -14.16744 -13.97667 -13.54221 -13.35805 -13.25118 -12.86126 -12.77768 -12.54806 -12.25038 -12.03754 -11.90263 -11.62134 -11.48097 -10.97559 -10.86764 -10.72367 -10.66431 -10.64501 -10.49226 -10.24700 -10.13240 -9.92285 -9.45824 -9.06811 -8.62530 -8.54148 -8.28458 -8.01327 -6.77290 -5.98519 -3.52377 0.97211 1.71543 2.03490 2.06464 2.74357 2.83926 3.26695 3.34562 3.36335 4.21480 4.38715 4.48076 4.55089 5.11522 5.15409 5.17467 5.24729 5.27766 5.43649 5.46462 5.50964 5.51385 5.55135 5.62389 5.67165 5.87600 5.91411 6.11837 6.16718 6.23168 6.26650 6.38888 6.53266 6.54697 6.55372 6.65076 6.73268 6.85000 7.07975 7.08585 7.15308 7.41579 7.56365 7.68060 7.71418 7.83271 8.34734 8.46631 8.99030 9.59602 10.21488 11.02187 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.004885 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.940830 B = 5730.418851 C = 7590.333685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.331 6.331 3 C 0.530 3.470 4 O -0.513 6.513 5 C 0.081 3.919 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.117 4.117 9 C 0.134 3.866 10 C 0.187 3.813 11 N -0.556 5.556 12 C -0.269 4.269 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.870 5.870 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.183 3.817 21 C -0.073 4.073 22 C -0.098 4.098 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.120 4.120 27 N -0.428 5.428 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.258 0.742 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -1.644 -7.827 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.246 6.246 3 C 0.375 3.625 4 O -0.402 6.402 5 C -0.056 4.056 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.138 4.138 9 C -0.009 4.009 10 C 0.059 3.941 11 N -0.273 5.273 12 C -0.399 4.399 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.509 5.509 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.057 3.943 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.139 4.139 27 N -0.141 5.141 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.836 -2.101 -7.629 9.274 hybrid contribution 0.939 0.984 0.941 1.654 sum -3.898 -1.117 -6.688 7.821 Atomic orbital electron populations 1.23282 0.76843 1.03677 1.02200 1.86734 1.22585 1.31979 1.83302 1.21037 0.88282 0.81391 0.71836 1.90789 1.66245 1.36312 1.46829 1.19828 0.90099 0.90680 1.04956 1.21782 0.95333 0.97573 1.00145 1.21453 0.93276 0.98972 0.97820 1.22261 1.01773 0.92782 0.96973 1.22849 0.88705 0.97945 0.91438 1.20130 0.96008 0.88508 0.89422 1.43808 1.24667 1.48617 1.10176 1.19011 0.86847 1.42658 0.91340 0.91874 1.25276 0.96295 0.97215 0.99224 1.70089 1.23299 1.43124 1.14405 0.86537 0.82657 0.78554 0.80059 1.20507 1.21579 1.20485 1.19930 0.90902 0.82543 1.00914 1.21183 0.94399 0.98147 0.93804 1.21113 0.97310 0.93180 1.00082 1.21075 1.00250 0.95925 0.97484 1.20902 0.99120 0.99267 0.96812 1.20995 0.99165 0.94919 0.99699 1.21118 1.00512 0.94923 0.97325 1.67494 1.08437 1.29254 1.08901 0.91997 0.92127 0.88038 0.84514 0.84718 0.84513 0.91660 0.92285 0.93186 0.93556 0.89033 0.86325 0.87244 0.87414 0.87280 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.33 -5.61 10.38 -40.44 -0.42 -6.03 16 3 C 0.53 9.65 7.95 34.76 0.28 9.92 16 4 O -0.51 -9.53 16.11 -19.21 -0.31 -9.84 16 5 C 0.08 1.53 6.75 -83.02 -0.56 0.97 16 6 C -0.13 -2.12 9.63 -39.04 -0.38 -2.49 16 7 C -0.09 -1.39 10.17 -39.31 -0.40 -1.79 16 8 C -0.12 -2.04 9.73 -39.31 -0.38 -2.42 16 9 C 0.13 2.63 6.36 -82.61 -0.53 2.11 16 10 C 0.19 3.67 5.99 -5.19 -0.03 3.64 16 11 N -0.56 -12.59 2.38 -175.99 -0.42 -13.01 16 12 C -0.27 -6.60 9.42 -15.06 -0.14 -6.74 16 13 H 0.06 1.54 7.93 -52.49 -0.42 1.13 16 14 C 0.02 0.58 4.82 -17.43 -0.08 0.50 16 15 N -0.87 -23.51 11.81 55.49 0.66 -22.85 16 16 Si 0.89 20.11 29.61 -169.99 -5.03 15.07 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 C 0.18 4.11 5.36 -5.20 -0.03 4.08 16 21 C -0.07 -1.45 5.45 -104.63 -0.57 -2.02 16 22 C -0.10 -1.90 9.72 -39.58 -0.38 -2.28 16 23 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 24 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 26 C -0.12 -2.12 9.58 -39.58 -0.38 -2.50 16 27 N -0.43 -8.66 10.03 -6.07 -0.06 -8.72 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.14 2.02 7.64 -52.49 -0.40 1.62 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.07 1.19 7.94 -51.93 -0.41 0.77 16 35 H 0.06 1.11 7.97 -51.93 -0.41 0.70 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 38 H 0.09 2.33 5.78 -51.93 -0.30 2.03 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.12 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -29.39 377.70 -9.33 -38.72 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.72 Total: 6.05 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.71 Total: -5.09 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.18 Total: -44.58 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.73 Total: -15.86 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.39 -9.33 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231427749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.221 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds