Wall clock time and date at job start Tue Mar 31 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34680 * 116.99857 * 2 1 4 4 O 1.21429 * 119.99935 * 0.02562 * 3 2 1 5 5 C 1.48071 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.39345 * 119.72759 * 179.97438 * 5 3 2 7 7 C 1.38585 * 119.05464 * 179.97438 * 6 5 3 8 8 C 1.38628 * 118.48961 * 0.02562 * 7 6 5 9 9 C 1.38585 * 119.35978 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.54555 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.47262 * 95.00110 * 10 9 8 12 12 C 1.36938 * 119.99808 * 270.00151 * 11 10 9 13 13 H 1.08001 * 119.99681 * 320.82934 * 12 11 10 14 14 C 1.38807 * 120.00271 * 140.83273 * 12 11 10 15 15 N 1.31626 * 119.99945 * 336.86157 * 14 12 11 16 16 Si 1.86796 * 120.00322 * 156.85470 * 14 12 11 17 17 H 1.48508 * 109.47150 * 60.00340 * 16 14 12 18 18 H 1.48494 * 109.47328 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47228 * 300.00665 * 16 14 12 20 20 C 1.46501 * 120.00076 * 89.99621 * 11 10 9 21 21 C 1.50694 * 109.46997 * 84.14302 * 20 11 10 22 22 C 1.38236 * 120.00276 * 85.13487 * 21 20 11 23 23 C 1.38236 * 120.00302 * 179.97438 * 22 21 20 24 24 C 1.38237 * 120.00044 * 0.08470 * 23 22 21 25 25 C 1.38234 * 119.99687 * 359.87471 * 24 23 22 26 26 C 1.38236 * 120.00263 * 0.08014 * 25 24 23 27 27 N 1.31501 * 120.90601 * 0.27277 * 9 8 7 28 28 H 1.09003 * 109.46657 * 299.99809 * 1 2 3 29 29 H 1.08992 * 109.47348 * 59.99817 * 1 2 3 30 30 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.47184 * 0.02666 * 6 5 3 32 32 H 1.07998 * 120.75746 * 179.97438 * 7 6 5 33 33 H 1.08002 * 120.32169 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47672 * 335.00065 * 10 9 8 35 35 H 1.09000 * 109.47128 * 214.99941 * 10 9 8 36 36 H 0.96998 * 120.00249 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47051 * 324.14073 * 20 11 10 38 38 H 1.08994 * 109.46921 * 204.14228 * 20 11 10 39 39 H 1.07996 * 119.99737 * 359.69938 * 22 21 20 40 40 H 1.08000 * 120.00046 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99979 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.99871 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.00126 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 0.0005 5 6 3.5421 1.2776 -0.0006 6 6 4.1687 2.5222 -0.0011 7 6 5.5534 2.5786 -0.0011 8 6 6.2637 1.3880 -0.0011 9 6 5.5745 0.1857 -0.0016 10 6 6.3424 -1.1109 -0.0022 11 7 6.4877 -1.5931 1.3735 12 6 7.5721 -1.2165 2.1201 13 1 8.5468 -1.1477 1.6601 14 6 7.4186 -0.9232 3.4682 15 7 6.2418 -0.5603 3.9329 16 14 8.8820 -1.0439 4.6228 17 1 9.9465 -0.1117 4.1719 18 1 8.4576 -0.6827 5.9992 19 1 9.4053 -2.4336 4.6152 20 6 5.4727 -2.4781 1.9505 21 6 5.7644 -3.9025 1.5543 22 6 6.6517 -4.6587 2.2970 23 6 6.9189 -5.9655 1.9338 24 6 6.3001 -6.5155 0.8268 25 6 5.4122 -5.7595 0.0845 26 6 5.1443 -4.4531 0.4483 27 7 4.2598 0.1608 -0.0075 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5836 3.4300 -0.0007 32 1 6.0676 3.5283 -0.0019 33 1 7.3437 1.3974 -0.0007 34 1 7.3290 -0.9489 -0.4365 35 1 5.8032 -1.8522 -0.5920 36 1 6.1346 -0.3550 4.8748 37 1 4.4884 -2.1922 1.5801 38 1 5.4911 -2.3922 3.0369 39 1 7.1396 -4.2272 3.1584 40 1 7.6125 -6.5562 2.5139 41 1 6.5092 -7.5363 0.5428 42 1 4.9283 -6.1894 -0.7801 43 1 4.4508 -3.8623 -0.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231427749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:58 Heat of formation + Delta-G solvation = -12.486102 kcal Electronic energy + Delta-G solvation = -27343.455470 eV Core-core repulsion = 23546.965218 eV Total energy + Delta-G solvation = -3796.490252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80888 -40.63050 -39.92763 -37.64421 -37.27487 -33.95333 -33.48629 -33.08975 -31.57909 -31.47586 -28.89056 -27.87517 -27.31189 -25.64490 -24.29100 -23.23796 -22.77913 -22.17511 -21.49807 -19.22639 -18.74343 -18.16629 -17.48557 -17.38918 -17.04438 -16.83292 -16.61893 -16.03945 -15.85737 -15.61513 -15.35407 -15.21692 -14.70935 -14.58140 -14.21310 -14.10325 -13.91916 -13.65239 -13.42811 -13.23403 -13.09540 -12.89691 -12.72041 -12.56874 -12.32714 -12.26952 -11.98213 -11.89844 -11.84044 -11.68664 -11.55847 -10.82144 -10.60165 -10.39529 -9.99676 -9.63363 -9.41729 -8.61084 -7.87535 -5.45303 -0.41695 0.35730 0.68056 0.70109 1.35388 1.45845 1.50510 1.55077 1.60914 2.48954 2.84945 3.06645 3.18804 3.29205 3.84637 3.95766 3.97770 4.11968 4.15244 4.18247 4.25255 4.27941 4.30614 4.36619 4.46546 4.52663 4.66244 4.70090 4.73580 4.83694 4.87265 5.00616 5.03504 5.08348 5.20281 5.26067 5.34681 5.36657 5.56730 5.68714 5.73348 5.76000 5.80316 6.07260 6.33209 6.46213 6.48369 7.03865 7.12577 7.77746 8.37299 9.10572 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.004885 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.940830 B = 5730.418851 C = 7590.333685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.529 3.471 4 O -0.523 6.523 5 C 0.055 3.945 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.123 4.123 9 C 0.113 3.887 10 C 0.189 3.811 11 N -0.567 5.567 12 C -0.263 4.263 13 H 0.064 0.936 14 C -0.019 4.019 15 N -0.907 5.907 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.300 1.300 19 H -0.278 1.278 20 C 0.198 3.802 21 C -0.093 4.093 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.127 4.127 27 N -0.452 5.452 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.249 0.751 37 H 0.027 0.973 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 -2.504 -9.514 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.374 3.626 4 O -0.413 6.413 5 C -0.081 4.081 6 C -0.143 4.143 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.030 4.030 10 C 0.063 3.937 11 N -0.285 5.285 12 C -0.394 4.394 13 H 0.082 0.918 14 C -0.219 4.219 15 N -0.549 5.549 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.227 1.227 19 H -0.204 1.204 20 C 0.072 3.928 21 C -0.096 4.096 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.146 4.146 27 N -0.165 5.165 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.175 0.825 32 H 0.195 0.805 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.264 -2.970 -9.348 10.695 hybrid contribution 0.660 1.198 1.329 1.908 sum -3.603 -1.771 -8.019 8.968 Atomic orbital electron populations 1.23651 0.74253 1.05897 1.02881 1.86708 1.25266 1.31507 1.82888 1.21020 0.88236 0.81664 0.71680 1.90763 1.66399 1.36526 1.47610 1.20195 0.90692 0.91347 1.05914 1.22131 0.96165 0.97481 0.98504 1.21917 0.92816 1.00053 0.95639 1.22514 1.02695 0.92786 0.96420 1.22820 0.88854 0.98611 0.92760 1.20123 0.96869 0.88960 0.87784 1.43861 1.24275 1.49611 1.10782 1.19175 0.87468 1.41058 0.91661 0.91814 1.25805 0.97908 0.97725 1.00434 1.70225 1.25109 1.45722 1.13811 0.85697 0.80481 0.78443 0.77983 1.19578 1.22676 1.20423 1.19549 0.90101 0.84616 0.98533 1.20914 0.96187 0.96922 0.95538 1.21017 0.98200 0.94839 0.99928 1.21337 1.00444 0.94690 0.98168 1.21351 0.97517 1.00821 0.95388 1.21376 0.98550 0.93677 1.00363 1.21167 1.00513 0.96240 0.96650 1.67402 1.08936 1.30387 1.09763 0.91854 0.90898 0.85147 0.82482 0.80469 0.83015 0.90255 0.92116 0.94160 0.95488 0.92687 0.88835 0.84892 0.83505 0.83808 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.35 -11.94 10.38 -55.89 -0.58 -12.52 16 3 C 0.53 19.42 7.95 70.43 0.56 19.98 16 4 O -0.52 -19.27 16.11 20.06 0.32 -18.95 16 5 C 0.05 2.08 6.75 41.88 0.28 2.36 16 6 C -0.12 -3.91 9.63 22.62 0.22 -3.69 16 7 C -0.08 -2.29 10.17 22.45 0.23 -2.06 16 8 C -0.12 -4.18 9.73 22.45 0.22 -3.97 16 9 C 0.11 4.48 6.36 42.69 0.27 4.75 16 10 C 0.19 7.57 5.99 85.63 0.51 8.09 16 11 N -0.57 -26.55 2.38 -710.71 -1.69 -28.24 16 12 C -0.26 -13.24 9.42 84.03 0.79 -12.45 16 13 H 0.06 3.14 7.93 -2.91 -0.02 3.12 16 14 C -0.02 -1.02 4.82 84.86 0.41 -0.61 16 15 N -0.91 -51.33 11.81 21.65 0.26 -51.08 16 16 Si 0.95 42.42 29.61 68.60 2.03 44.45 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C 0.20 9.41 5.36 85.63 0.46 9.87 16 21 C -0.09 -3.81 5.45 -19.87 -0.11 -3.92 16 22 C -0.12 -4.77 9.72 22.27 0.22 -4.55 16 23 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 24 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 25 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.13 -4.41 9.58 22.27 0.21 -4.20 16 27 N -0.45 -18.70 10.03 -173.12 -1.74 -20.44 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.16 4.34 7.64 -2.91 -0.02 4.31 16 32 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 33 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.08 2.87 7.94 -2.38 -0.02 2.85 16 35 H 0.06 2.35 7.97 -2.39 -0.02 2.33 16 36 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 38 H 0.06 3.01 5.78 -2.39 -0.01 3.00 16 39 H 0.09 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -66.55 377.70 5.76 -60.79 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 1.01 Total: 24.95 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.14 Total: 1.03 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.17 Total: -99.76 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.26 Total: -31.47 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -66.55 5.76 -60.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231427749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.304 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds