Wall clock time and date at job start Tue Mar 31 2020 14:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34675 * 117.00083 * 2 1 4 4 O 1.21435 * 119.99546 * 359.97438 * 3 2 1 5 5 C 1.48051 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.92376 * 359.97438 * 5 3 2 7 7 C 1.38125 * 118.99295 * 180.02562 * 6 5 3 8 8 N 1.31822 * 120.90351 * 359.97438 * 7 6 5 9 9 C 1.31794 * 122.06101 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.54860 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.46911 * 274.99277 * 10 9 8 12 12 C 1.36937 * 120.00742 * 270.00100 * 11 10 9 13 13 H 1.07993 * 120.00461 * 141.63731 * 12 11 10 14 14 C 1.38809 * 119.99654 * 321.64451 * 12 11 10 15 15 N 1.31621 * 120.00023 * 160.80983 * 14 12 11 16 16 Si 1.86808 * 120.00125 * 340.81192 * 14 12 11 17 17 H 1.48501 * 109.46761 * 95.27162 * 16 14 12 18 18 H 1.48497 * 109.47270 * 215.27076 * 16 14 12 19 19 H 1.48496 * 109.46954 * 335.27055 * 16 14 12 20 20 C 1.46511 * 119.99667 * 90.00383 * 11 10 9 21 21 C 1.50696 * 109.46820 * 265.24026 * 20 11 10 22 22 C 1.38236 * 120.00001 * 94.79513 * 21 20 11 23 23 C 1.38241 * 119.99581 * 179.97438 * 22 21 20 24 24 C 1.38226 * 120.00420 * 0.08894 * 23 22 21 25 25 C 1.38239 * 120.00068 * 359.86204 * 24 23 22 26 26 C 1.38233 * 119.99956 * 274.76534 * 21 20 11 27 27 C 1.38168 * 120.90240 * 0.26725 * 9 8 7 28 28 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47436 * 299.99849 * 1 2 3 30 30 H 1.09005 * 109.47455 * 60.00033 * 1 2 3 31 31 H 1.07999 * 120.50476 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.54747 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46857 * 155.00031 * 10 9 8 34 34 H 1.09000 * 109.47058 * 34.99472 * 10 9 8 35 35 H 0.97005 * 119.99820 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46957 * 145.23662 * 20 11 10 37 37 H 1.08996 * 109.47065 * 25.24006 * 20 11 10 38 38 H 1.07996 * 119.99954 * 359.69556 * 22 21 20 39 39 H 1.08002 * 119.99604 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00197 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00370 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.00018 * 0.02562 * 26 21 20 43 43 H 1.07996 * 120.50411 * 179.70590 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4019 2.2184 -0.0005 5 6 3.5418 1.2775 -0.0006 6 6 4.3226 0.1169 -0.0006 7 6 5.6987 0.2357 -0.0006 8 7 6.2759 1.4208 -0.0011 9 6 5.5781 2.5388 -0.0011 10 6 6.2968 3.8635 -0.0011 11 7 6.6353 4.2354 1.3749 12 6 5.7552 4.9725 2.1213 13 1 5.6298 4.7612 3.1729 14 6 5.0241 5.9914 1.5261 15 7 3.9329 6.4440 2.1065 16 14 5.5888 6.7201 -0.0986 17 1 4.8793 6.0471 -1.2161 18 1 5.2836 8.1732 -0.1221 19 1 7.0524 6.5193 -0.2491 20 6 7.9157 3.8185 1.9524 21 6 7.7261 2.5366 2.7215 22 6 7.9770 1.3214 2.1122 23 6 7.8036 0.1455 2.8180 24 6 7.3776 0.1846 4.1324 25 6 7.1277 1.3999 4.7421 26 6 7.3020 2.5758 4.0366 27 6 4.1967 2.5131 0.0049 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8564 -0.8574 -0.0006 32 1 6.3101 -0.6546 -0.0010 33 1 5.6514 4.6270 -0.4354 34 1 7.2101 3.7814 -0.5905 35 1 3.4223 7.1563 1.6908 36 1 8.2810 4.5950 2.6245 37 1 8.6399 3.6593 1.1536 38 1 8.3041 1.2906 1.0834 39 1 7.9991 -0.8040 2.3418 40 1 7.2417 -0.7341 4.6836 41 1 6.7953 1.4305 5.7692 42 1 7.1061 3.5252 4.5127 43 1 3.6313 3.4332 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235211611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:33 Heat of formation + Delta-G solvation = 14.972348 kcal Electronic energy + Delta-G solvation = -28069.357925 eV Core-core repulsion = 24274.058360 eV Total energy + Delta-G solvation = -3795.299565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.57803 -39.48586 -38.55058 -36.38171 -35.97065 -32.59317 -32.06427 -31.73790 -30.26779 -30.09291 -27.94616 -26.53541 -25.74940 -24.36305 -22.70569 -21.93170 -21.86811 -20.60038 -20.17649 -17.94898 -17.23130 -16.66754 -16.32785 -16.14743 -15.79278 -15.39668 -15.27695 -14.68867 -14.64860 -14.34935 -14.09972 -13.66892 -13.47218 -13.27549 -13.00027 -12.80405 -12.61675 -12.55355 -12.27168 -12.20282 -11.95159 -11.53379 -11.27485 -10.92722 -10.81924 -10.63662 -10.61117 -10.51820 -10.30989 -10.07490 -9.72724 -9.57758 -9.12755 -8.70159 -8.61035 -8.26721 -8.06315 -6.97582 -6.07319 -3.53620 0.87831 1.49071 1.97902 2.02910 2.65065 2.77611 3.23232 3.41348 3.44334 4.09605 4.41890 4.42243 4.70495 4.71377 5.03469 5.04200 5.12193 5.15947 5.27188 5.32998 5.41851 5.42603 5.45121 5.46473 5.56328 5.79373 5.84436 5.92217 6.01826 6.11728 6.16585 6.24808 6.28147 6.32316 6.36226 6.51761 6.59539 6.64145 6.70418 6.99934 7.06045 7.07689 7.37539 7.63713 7.79393 7.94075 8.29287 8.37139 8.84574 9.58620 9.96739 11.06762 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008457 B = 0.006524 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.253726 B = 4290.837119 C = 6294.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.508 3.492 4 O -0.490 6.490 5 C -0.085 4.085 6 C -0.139 4.139 7 C 0.087 3.913 8 N -0.447 5.447 9 C 0.127 3.873 10 C 0.177 3.823 11 N -0.582 5.582 12 C -0.272 4.272 13 H 0.081 0.919 14 C 0.041 3.959 15 N -0.890 5.890 16 Si 0.873 3.127 17 H -0.283 1.283 18 H -0.298 1.298 19 H -0.264 1.264 20 C 0.184 3.816 21 C -0.088 4.088 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.097 4.097 27 C -0.083 4.083 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -14.570 -3.650 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.377 6.377 5 C -0.094 4.094 6 C -0.159 4.159 7 C -0.070 4.070 8 N -0.158 5.158 9 C -0.014 4.014 10 C 0.050 3.950 11 N -0.301 5.301 12 C -0.401 4.401 13 H 0.099 0.901 14 C -0.161 4.161 15 N -0.529 5.529 16 Si 0.703 3.297 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.188 1.188 20 C 0.059 3.941 21 C -0.091 4.091 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.116 4.116 27 C -0.105 4.105 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.637 -14.003 -3.631 14.704 hybrid contribution -1.462 0.182 -0.615 1.596 sum 1.175 -13.820 -4.246 14.505 Atomic orbital electron populations 1.23268 0.76136 1.03539 1.02787 1.86520 1.23437 1.32765 1.84612 1.21278 0.89086 0.81441 0.73027 1.90878 1.66499 1.35910 1.44405 1.19374 0.89018 0.95254 1.05785 1.22221 0.95385 0.98263 1.00078 1.22589 0.91725 0.95743 0.96906 1.67417 1.41120 0.98023 1.09217 1.22589 0.90383 0.95914 0.92483 1.20414 0.97449 0.88430 0.88673 1.44088 1.16166 1.58831 1.10995 1.18759 1.17246 1.09210 0.94873 0.90147 1.25465 0.96245 0.96570 0.97814 1.69839 1.13955 1.28752 1.40376 0.86989 0.80188 0.78180 0.84326 1.21125 1.22632 1.18829 1.19947 0.87288 0.91470 0.95441 1.20877 0.97098 0.96991 0.94085 1.21184 0.98679 0.91635 0.99319 1.20960 1.01890 0.97810 0.94664 1.20937 1.01668 0.97134 0.95555 1.21022 1.01736 0.92941 0.99554 1.21093 0.97992 0.97906 0.94592 1.22232 0.95845 0.97498 0.94876 0.88068 0.91701 0.91866 0.84366 0.82945 0.91301 0.91630 0.92414 0.91681 0.92902 0.85439 0.87394 0.87506 0.87263 0.86415 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.06 9.92 -40.43 -0.40 -5.46 16 3 C 0.51 8.95 7.92 34.76 0.28 9.23 16 4 O -0.49 -10.13 16.24 -19.22 -0.31 -10.44 16 5 C -0.09 -1.51 5.91 -104.66 -0.62 -2.13 16 6 C -0.14 -2.02 9.71 -39.01 -0.38 -2.40 16 7 C 0.09 1.26 11.05 -17.60 -0.19 1.06 16 8 N -0.45 -7.61 6.95 -9.53 -0.07 -7.67 16 9 C 0.13 2.49 6.36 -82.63 -0.53 1.96 16 10 C 0.18 3.68 4.81 -5.19 -0.02 3.66 16 11 N -0.58 -12.97 2.06 -175.98 -0.36 -13.34 16 12 C -0.27 -7.17 9.93 -15.06 -0.15 -7.32 16 13 H 0.08 2.33 7.78 -52.49 -0.41 1.92 16 14 C 0.04 1.12 5.35 -17.43 -0.09 1.03 16 15 N -0.89 -26.30 13.97 55.49 0.78 -25.52 16 16 Si 0.87 21.03 24.86 -169.99 -4.23 16.81 16 17 H -0.28 -6.64 6.71 56.52 0.38 -6.26 16 18 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.18 3.53 5.85 -5.19 -0.03 3.50 16 21 C -0.09 -1.61 5.43 -104.63 -0.57 -2.18 16 22 C -0.09 -1.47 7.50 -39.58 -0.30 -1.76 16 23 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.13 -2.03 10.05 -39.59 -0.40 -2.43 16 25 C -0.13 -2.22 10.05 -39.58 -0.40 -2.61 16 26 C -0.10 -1.79 9.65 -39.58 -0.38 -2.17 16 27 C -0.08 -1.70 9.29 -39.01 -0.36 -2.06 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 1.62 7.71 -52.49 -0.40 1.21 16 32 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.07 1.55 3.02 -51.93 -0.16 1.39 16 34 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 37 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 38 H 0.13 2.02 6.98 -52.49 -0.37 1.65 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.24 7.85 -52.49 -0.41 1.83 16 43 H 0.15 3.35 7.74 -52.49 -0.41 2.94 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -31.27 364.09 -8.08 -39.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.50 Total: 6.39 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.48 Total: -5.59 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.35 Total: -46.53 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.71 Total: -15.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.23 Total: 16.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.27 -8.08 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235211611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.322 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds