Wall clock time and date at job start Tue Mar 31 2020 14:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34675 * 117.00083 * 2 1 4 4 O 1.21435 * 119.99546 * 359.97438 * 3 2 1 5 5 C 1.48051 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.92376 * 359.97438 * 5 3 2 7 7 C 1.38125 * 118.99295 * 180.02562 * 6 5 3 8 8 N 1.31822 * 120.90351 * 359.97438 * 7 6 5 9 9 C 1.31794 * 122.06101 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.54860 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.46911 * 274.99277 * 10 9 8 12 12 C 1.36937 * 120.00742 * 270.00100 * 11 10 9 13 13 H 1.07993 * 120.00461 * 141.63731 * 12 11 10 14 14 C 1.38809 * 119.99654 * 321.64451 * 12 11 10 15 15 N 1.31621 * 120.00023 * 160.80983 * 14 12 11 16 16 Si 1.86808 * 120.00125 * 340.81192 * 14 12 11 17 17 H 1.48501 * 109.46761 * 95.27162 * 16 14 12 18 18 H 1.48497 * 109.47270 * 215.27076 * 16 14 12 19 19 H 1.48496 * 109.46954 * 335.27055 * 16 14 12 20 20 C 1.46511 * 119.99667 * 90.00383 * 11 10 9 21 21 C 1.50696 * 109.46820 * 265.24026 * 20 11 10 22 22 C 1.38236 * 120.00001 * 94.79513 * 21 20 11 23 23 C 1.38241 * 119.99581 * 179.97438 * 22 21 20 24 24 C 1.38226 * 120.00420 * 0.08894 * 23 22 21 25 25 C 1.38239 * 120.00068 * 359.86204 * 24 23 22 26 26 C 1.38233 * 119.99956 * 274.76534 * 21 20 11 27 27 C 1.38168 * 120.90240 * 0.26725 * 9 8 7 28 28 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47436 * 299.99849 * 1 2 3 30 30 H 1.09005 * 109.47455 * 60.00033 * 1 2 3 31 31 H 1.07999 * 120.50476 * 0.02562 * 6 5 3 32 32 H 1.07995 * 119.54747 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46857 * 155.00031 * 10 9 8 34 34 H 1.09000 * 109.47058 * 34.99472 * 10 9 8 35 35 H 0.97005 * 119.99820 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46957 * 145.23662 * 20 11 10 37 37 H 1.08996 * 109.47065 * 25.24006 * 20 11 10 38 38 H 1.07996 * 119.99954 * 359.69556 * 22 21 20 39 39 H 1.08002 * 119.99604 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00197 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00370 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.00018 * 0.02562 * 26 21 20 43 43 H 1.07996 * 120.50411 * 179.70590 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4019 2.2184 -0.0005 5 6 3.5418 1.2775 -0.0006 6 6 4.3226 0.1169 -0.0006 7 6 5.6987 0.2357 -0.0006 8 7 6.2759 1.4208 -0.0011 9 6 5.5781 2.5388 -0.0011 10 6 6.2968 3.8635 -0.0011 11 7 6.6353 4.2354 1.3749 12 6 5.7552 4.9725 2.1213 13 1 5.6298 4.7612 3.1729 14 6 5.0241 5.9914 1.5261 15 7 3.9329 6.4440 2.1065 16 14 5.5888 6.7201 -0.0986 17 1 4.8793 6.0471 -1.2161 18 1 5.2836 8.1732 -0.1221 19 1 7.0524 6.5193 -0.2491 20 6 7.9157 3.8185 1.9524 21 6 7.7261 2.5366 2.7215 22 6 7.9770 1.3214 2.1122 23 6 7.8036 0.1455 2.8180 24 6 7.3776 0.1846 4.1324 25 6 7.1277 1.3999 4.7421 26 6 7.3020 2.5758 4.0366 27 6 4.1967 2.5131 0.0049 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8564 -0.8574 -0.0006 32 1 6.3101 -0.6546 -0.0010 33 1 5.6514 4.6270 -0.4354 34 1 7.2101 3.7814 -0.5905 35 1 3.4223 7.1563 1.6908 36 1 8.2810 4.5950 2.6245 37 1 8.6399 3.6593 1.1536 38 1 8.3041 1.2906 1.0834 39 1 7.9991 -0.8040 2.3418 40 1 7.2417 -0.7341 4.6836 41 1 6.7953 1.4305 5.7692 42 1 7.1061 3.5252 4.5127 43 1 3.6313 3.4332 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235211611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:32 Heat of formation + Delta-G solvation = -2.379853 kcal Electronic energy + Delta-G solvation = -28070.110372 eV Core-core repulsion = 24274.058360 eV Total energy + Delta-G solvation = -3796.052013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90944 -40.82577 -39.84847 -37.68835 -37.61441 -34.13319 -33.78907 -33.18063 -31.59471 -31.53037 -28.95450 -28.03340 -27.50668 -25.65743 -24.19115 -23.42061 -23.17735 -21.92884 -21.65552 -19.40992 -18.76044 -18.17473 -17.56604 -17.47983 -17.42655 -16.85334 -16.67986 -16.16543 -15.96855 -15.69947 -15.57985 -15.11080 -14.73721 -14.57004 -14.52280 -14.36028 -14.13553 -14.00291 -13.83340 -13.41673 -13.18012 -12.96481 -12.85422 -12.58778 -12.22293 -12.05320 -11.99897 -11.94168 -11.90332 -11.63080 -11.60623 -10.95860 -10.71999 -10.47553 -9.98431 -9.53943 -9.41232 -8.81064 -8.20373 -5.63811 -0.48228 0.15165 0.70127 0.75307 1.28202 1.39038 1.40790 1.47200 1.50642 2.39069 2.71253 3.10731 3.12454 3.37879 3.52349 3.62042 3.78963 3.94866 4.10809 4.16817 4.24127 4.25499 4.26150 4.35870 4.40371 4.49687 4.55616 4.62712 4.64148 4.70348 4.80667 4.87048 4.92201 4.98482 5.04038 5.10523 5.16495 5.35285 5.41092 5.67567 5.79056 5.81979 5.88390 6.08387 6.18762 6.38250 6.48843 6.91757 7.00890 7.56775 7.98406 8.98243 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008457 B = 0.006524 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.253726 B = 4290.837119 C = 6294.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.510 3.490 4 O -0.535 6.535 5 C -0.099 4.099 6 C -0.112 4.112 7 C 0.098 3.902 8 N -0.441 5.441 9 C 0.115 3.885 10 C 0.175 3.825 11 N -0.591 5.591 12 C -0.249 4.249 13 H 0.038 0.962 14 C -0.015 4.015 15 N -0.946 5.946 16 Si 0.935 3.065 17 H -0.278 1.278 18 H -0.309 1.309 19 H -0.242 1.242 20 C 0.182 3.818 21 C -0.105 4.105 22 C -0.089 4.089 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.146 4.146 26 C -0.127 4.127 27 C -0.117 4.117 28 H 0.147 0.853 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.180 0.820 32 H 0.207 0.793 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.261 0.739 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -19.856 -5.272 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.355 3.645 4 O -0.425 6.425 5 C -0.108 4.108 6 C -0.132 4.132 7 C -0.060 4.060 8 N -0.152 5.152 9 C -0.024 4.024 10 C 0.049 3.951 11 N -0.311 5.311 12 C -0.378 4.378 13 H 0.055 0.945 14 C -0.212 4.212 15 N -0.590 5.590 16 Si 0.764 3.236 17 H -0.206 1.206 18 H -0.238 1.238 19 H -0.165 1.165 20 C 0.058 3.942 21 C -0.108 4.108 22 C -0.107 4.107 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.164 4.164 26 C -0.146 4.146 27 C -0.139 4.139 28 H 0.165 0.835 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.197 0.803 32 H 0.224 0.776 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.460 -19.332 -5.269 20.527 hybrid contribution -2.050 1.513 -0.045 2.548 sum 2.410 -17.819 -5.314 18.750 Atomic orbital electron populations 1.23674 0.73955 1.06410 1.02512 1.86498 1.25445 1.30409 1.83676 1.21402 0.89246 0.81822 0.72012 1.90863 1.67415 1.37623 1.46617 1.19513 0.89502 0.95510 1.06239 1.22707 0.95406 0.98497 0.96583 1.23493 0.92255 0.96148 0.94091 1.67436 1.40722 0.98110 1.08922 1.22113 0.89757 0.96359 0.94125 1.20340 0.98278 0.88939 0.87522 1.44090 1.16669 1.59193 1.11170 1.18493 1.16750 1.09047 0.93554 0.94474 1.26050 0.96311 0.97343 1.01499 1.69985 1.15956 1.30236 1.42800 0.85979 0.80803 0.76317 0.80535 1.20596 1.23814 1.16498 1.20043 0.86257 0.91888 0.96056 1.20768 0.98631 0.97429 0.93925 1.21309 0.98329 0.91236 0.99852 1.21387 0.99941 0.98755 0.94355 1.21336 1.00121 0.97403 0.96038 1.21243 1.01822 0.93066 1.00236 1.21072 1.00112 0.97835 0.95532 1.21958 0.96403 0.97240 0.98252 0.83487 0.92513 0.91809 0.80264 0.77644 0.93613 0.88930 0.92969 0.93089 0.90245 0.84255 0.83329 0.84250 0.86216 0.89256 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.34 -8.95 9.92 -55.84 -0.55 -9.50 16 3 C 0.51 17.85 7.92 70.43 0.56 18.41 16 4 O -0.54 -23.16 16.24 20.05 0.33 -22.84 16 5 C -0.10 -3.40 5.91 -19.89 -0.12 -3.51 16 6 C -0.11 -2.73 9.71 22.64 0.22 -2.51 16 7 C 0.10 2.25 11.05 84.67 0.94 3.19 16 8 N -0.44 -13.42 6.95 -184.05 -1.28 -14.70 16 9 C 0.12 4.44 6.36 42.55 0.27 4.71 16 10 C 0.18 7.28 4.81 85.64 0.41 7.69 16 11 N -0.59 -27.01 2.06 -710.67 -1.46 -28.47 16 12 C -0.25 -13.95 9.93 84.03 0.83 -13.12 16 13 H 0.04 2.37 7.78 -2.91 -0.02 2.35 16 14 C -0.02 -0.89 5.35 84.86 0.45 -0.44 16 15 N -0.95 -60.37 13.97 21.65 0.30 -60.07 16 16 Si 0.94 45.81 24.86 68.60 1.71 47.51 16 17 H -0.28 -13.24 6.71 99.48 0.67 -12.57 16 18 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 19 H -0.24 -10.80 7.11 99.48 0.71 -10.10 16 20 C 0.18 7.01 5.85 85.63 0.50 7.51 16 21 C -0.11 -3.79 5.43 -19.87 -0.11 -3.90 16 22 C -0.09 -2.59 7.50 22.27 0.17 -2.42 16 23 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 24 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 25 C -0.15 -4.65 10.05 22.27 0.22 -4.43 16 26 C -0.13 -4.81 9.65 22.27 0.21 -4.60 16 27 C -0.12 -4.91 9.29 22.64 0.21 -4.70 16 28 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.18 2.95 7.71 -2.91 -0.02 2.93 16 32 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.05 2.11 3.02 -2.39 -0.01 2.10 16 34 H 0.09 3.27 7.86 -2.39 -0.02 3.26 16 35 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 36 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 37 H 0.08 2.59 7.75 -2.39 -0.02 2.58 16 38 H 0.14 3.74 6.98 -2.91 -0.02 3.72 16 39 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.09 3.77 7.85 -2.91 -0.02 3.74 16 43 H 0.10 5.13 7.74 -2.91 -0.02 5.11 16 Total: -1.00 -76.43 364.09 6.44 -69.99 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.98 Total: 20.57 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.42 Total: -2.48 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -2.44 Total: -103.25 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.23 Total: -32.34 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.71 Total: 47.51 kcal Total: -76.43 6.44 -69.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235211611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.605 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds