Wall clock time and date at job start Tue Mar 31 2020 14:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34679 * 116.99663 * 2 1 4 4 O 1.21431 * 120.00250 * 359.97438 * 3 2 1 5 5 C 1.48067 * 119.99948 * 180.27796 * 3 2 1 6 6 C 1.39349 * 119.72805 * 179.72353 * 5 3 2 7 7 C 1.38589 * 119.05689 * 179.97438 * 6 5 3 8 8 C 1.38617 * 118.48900 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.31968 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46897 * 85.74571 * 9 8 7 11 11 C 1.36941 * 119.99204 * 264.80884 * 10 9 8 12 12 H 1.08004 * 119.99503 * 147.50757 * 11 10 9 13 13 C 1.38804 * 120.00702 * 327.50133 * 11 10 9 14 14 N 1.31620 * 120.00124 * 154.00927 * 13 11 10 15 15 Si 1.86801 * 120.00148 * 334.01985 * 13 11 10 16 16 H 1.48504 * 109.47333 * 95.06682 * 15 13 11 17 17 H 1.48496 * 109.47482 * 215.07403 * 15 13 11 18 18 H 1.48503 * 109.46497 * 335.07058 * 15 13 11 19 19 C 1.46494 * 120.00456 * 84.81182 * 10 9 8 20 20 C 1.50690 * 109.47513 * 87.72005 * 19 10 9 21 21 C 1.38230 * 120.00471 * 272.17998 * 20 19 10 22 22 C 1.38241 * 120.00507 * 179.76542 * 21 20 19 23 23 C 1.38236 * 119.99491 * 0.50300 * 22 21 20 24 24 C 1.38243 * 120.00091 * 359.74851 * 23 22 21 25 25 C 1.38236 * 119.99663 * 92.44841 * 20 19 10 26 26 C 1.38580 * 119.36143 * 0.02562 * 8 7 6 27 27 N 1.31509 * 120.90565 * 359.73223 * 26 8 7 28 28 H 1.09006 * 109.46925 * 300.00207 * 1 2 3 29 29 H 1.08986 * 109.47296 * 60.00381 * 1 2 3 30 30 H 1.08997 * 109.46811 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.47060 * 359.94947 * 6 5 3 32 32 H 1.08002 * 120.75296 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47212 * 205.74111 * 9 8 7 34 34 H 1.08996 * 109.46981 * 325.74603 * 9 8 7 35 35 H 0.97007 * 119.99717 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.46943 * 207.72935 * 19 10 9 37 37 H 1.09004 * 109.46654 * 327.72150 * 19 10 9 38 38 H 1.08005 * 120.00090 * 359.97438 * 21 20 19 39 39 H 1.07998 * 120.00268 * 180.23061 * 22 21 20 40 40 H 1.07997 * 119.99920 * 179.72346 * 23 22 21 41 41 H 1.07999 * 120.00086 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.00445 * 0.02562 * 25 20 19 43 43 H 1.08000 * 119.54936 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 -0.0005 5 6 3.5420 1.2776 -0.0062 6 6 4.1687 2.5222 -0.0120 7 6 5.5534 2.5786 -0.0173 8 6 6.2636 1.3882 -0.0160 9 6 7.7706 1.4014 -0.0221 10 7 8.2635 1.5130 1.3530 11 6 8.5842 2.7407 1.8677 12 1 8.4389 2.9401 2.9192 13 6 9.0962 3.7290 1.0383 14 7 8.9343 4.9978 1.3488 15 14 10.0145 3.2584 -0.5188 16 1 9.0773 3.2752 -1.6706 17 1 11.1118 4.2296 -0.7591 18 1 10.5846 1.8958 -0.3644 19 6 8.4134 0.3112 2.1772 20 6 9.7786 -0.2856 1.9518 21 6 9.9761 -1.1923 0.9272 22 6 11.2296 -1.7361 0.7174 23 6 12.2833 -1.3810 1.5387 24 6 12.0847 -0.4782 2.5666 25 6 10.8323 0.0695 2.7731 26 6 5.5746 0.1859 -0.0101 27 7 4.2597 0.1609 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5835 3.4300 -0.0128 32 1 6.0674 3.5285 -0.0214 33 1 8.1403 0.4774 -0.4667 34 1 8.1241 2.2519 -0.6049 35 1 9.2924 5.6884 0.7693 36 1 8.3015 0.5756 3.2287 37 1 7.6492 -0.4157 1.9020 38 1 9.1517 -1.4733 0.2885 39 1 11.3846 -2.4416 -0.0855 40 1 13.2615 -1.8092 1.3776 41 1 12.9078 -0.2011 3.2085 42 1 10.6771 0.7742 3.5766 43 1 6.1249 -0.7434 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237447481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:06 Heat of formation + Delta-G solvation = 8.933127 kcal Electronic energy + Delta-G solvation = -26930.981940 eV Core-core repulsion = 23135.420495 eV Total energy + Delta-G solvation = -3795.561445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.64100 -39.49329 -38.78976 -36.47441 -36.17747 -32.68220 -32.23816 -31.64248 -30.46010 -30.34634 -28.18531 -26.61910 -25.90397 -23.62450 -23.15810 -22.11822 -21.99067 -20.95116 -20.17710 -18.11785 -17.22299 -17.09587 -16.42193 -16.37016 -16.02866 -15.40800 -14.86683 -14.80593 -14.71603 -14.47926 -14.37335 -13.82019 -13.52198 -13.09452 -13.02221 -12.92857 -12.73954 -12.68037 -12.36322 -12.24833 -12.14818 -11.90424 -11.35806 -10.98237 -10.85039 -10.81769 -10.73124 -10.58594 -10.49350 -10.27969 -9.83577 -9.47925 -9.29236 -8.80122 -8.77173 -8.48726 -8.26370 -7.23738 -6.23274 -3.56585 0.75002 1.55650 1.80541 1.84439 2.56343 2.65154 3.14364 3.36064 3.43214 4.02797 4.22150 4.32888 4.33095 4.92144 4.98118 5.01774 5.09110 5.13298 5.20313 5.24915 5.25614 5.31090 5.35176 5.40401 5.42762 5.51970 5.64317 5.83003 5.84269 5.95296 6.03274 6.09169 6.21043 6.25607 6.39338 6.44973 6.47482 6.52830 6.70918 6.86801 6.87918 6.91458 7.16977 7.45944 7.62853 7.74360 8.09031 8.11538 8.69356 9.45269 9.80424 10.90541 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.003656 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.900145 B = 7656.971553 C = 8969.450775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.529 3.471 4 O -0.507 6.507 5 C 0.059 3.941 6 C -0.100 4.100 7 C -0.062 4.062 8 C -0.095 4.095 9 C 0.164 3.836 10 N -0.581 5.581 11 C -0.268 4.268 12 H 0.086 0.914 13 C 0.042 3.958 14 N -0.883 5.883 15 Si 0.859 3.141 16 H -0.284 1.284 17 H -0.298 1.298 18 H -0.260 1.260 19 C 0.179 3.821 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.099 4.099 26 C 0.091 3.909 27 N -0.440 5.440 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -11.450 -2.478 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.252 6.252 3 C 0.373 3.627 4 O -0.395 6.395 5 C -0.077 4.077 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.100 4.100 9 C 0.038 3.962 10 N -0.299 5.299 11 C -0.396 4.396 12 H 0.103 0.897 13 C -0.160 4.160 14 N -0.522 5.522 15 Si 0.688 3.312 16 H -0.212 1.212 17 H -0.226 1.226 18 H -0.184 1.184 19 C 0.054 3.946 20 C -0.085 4.085 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.070 4.070 27 N -0.151 5.151 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.676 -11.727 -2.453 13.258 hybrid contribution 0.995 0.867 -0.944 1.622 sum -4.682 -10.861 -3.397 12.305 Atomic orbital electron populations 1.23291 0.76680 1.03643 1.02430 1.86694 1.22739 1.32139 1.83620 1.20958 0.88139 0.81433 0.72205 1.90822 1.66097 1.36208 1.46386 1.19730 0.90012 0.90516 1.07491 1.22054 0.95508 0.97671 0.96788 1.21645 0.92448 0.99969 0.94747 1.22304 1.00482 0.93552 0.93712 1.20362 0.86284 1.01231 0.88363 1.44182 1.71492 1.03296 1.10946 1.18823 1.37953 0.86434 0.96365 0.89694 1.25336 0.97784 0.94930 0.97945 1.69903 1.44010 0.99214 1.39093 0.87261 0.80769 0.79420 0.83742 1.21196 1.22617 1.18429 1.20041 0.90160 0.88030 0.96418 1.20928 0.98775 0.94232 0.94597 1.20988 0.96892 0.97876 0.98031 1.21015 0.93440 1.00643 0.99462 1.20971 0.98420 0.99501 0.96705 1.21106 0.97186 0.97753 0.98288 1.21077 0.92412 0.98529 0.99717 1.22630 0.88836 0.97789 0.97785 1.67511 1.08398 1.30021 1.09143 0.91922 0.91974 0.88062 0.83881 0.83206 0.92494 0.90801 0.92350 0.91540 0.92928 0.86868 0.86988 0.87077 0.86825 0.86059 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.34 -4.86 10.38 -40.43 -0.42 -5.28 16 3 C 0.53 8.60 7.95 34.76 0.28 8.87 16 4 O -0.51 -8.79 16.11 -19.21 -0.31 -9.10 16 5 C 0.06 0.99 6.75 -83.03 -0.56 0.43 16 6 C -0.10 -1.66 9.63 -39.04 -0.38 -2.04 16 7 C -0.06 -1.11 9.86 -39.31 -0.39 -1.49 16 8 C -0.09 -1.66 5.48 -104.35 -0.57 -2.23 16 9 C 0.16 3.10 4.54 -5.19 -0.02 3.07 16 10 N -0.58 -11.93 2.13 -175.99 -0.37 -12.31 16 11 C -0.27 -6.58 9.92 -15.06 -0.15 -6.73 16 12 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 13 C 0.04 1.09 5.24 -17.43 -0.09 1.00 16 14 N -0.88 -24.48 13.97 55.49 0.78 -23.70 16 15 Si 0.86 20.24 25.09 -169.99 -4.27 15.98 16 16 H -0.28 -6.42 6.60 56.52 0.37 -6.05 16 17 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.18 3.14 5.81 -5.20 -0.03 3.11 16 20 C -0.08 -1.42 5.46 -104.63 -0.57 -1.99 16 21 C -0.12 -1.86 9.50 -39.58 -0.38 -2.24 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 25 C -0.10 -1.68 9.69 -39.58 -0.38 -2.06 16 26 C 0.09 1.44 10.77 -17.56 -0.19 1.25 16 27 N -0.44 -7.42 10.12 -9.81 -0.10 -7.52 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.14 2.20 7.64 -52.48 -0.40 1.80 16 32 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 33 H 0.06 0.95 7.54 -51.93 -0.39 0.56 16 34 H 0.07 1.56 3.10 -51.93 -0.16 1.40 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 37 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 38 H 0.11 1.54 7.79 -52.48 -0.41 1.14 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 43 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -29.63 371.06 -8.24 -37.87 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.58 Total: 5.05 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.56 Total: -6.58 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.30 Total: -43.52 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.73 Total: -14.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.27 Total: 15.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.63 -8.24 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237447481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.803 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds