Wall clock time and date at job start Tue Mar 31 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34679 * 116.99663 * 2 1 4 4 O 1.21431 * 120.00250 * 359.97438 * 3 2 1 5 5 C 1.48067 * 119.99948 * 180.27796 * 3 2 1 6 6 C 1.39349 * 119.72805 * 179.72353 * 5 3 2 7 7 C 1.38589 * 119.05689 * 179.97438 * 6 5 3 8 8 C 1.38617 * 118.48900 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.31968 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46897 * 85.74571 * 9 8 7 11 11 C 1.36941 * 119.99204 * 264.80884 * 10 9 8 12 12 H 1.08004 * 119.99503 * 147.50757 * 11 10 9 13 13 C 1.38804 * 120.00702 * 327.50133 * 11 10 9 14 14 N 1.31620 * 120.00124 * 154.00927 * 13 11 10 15 15 Si 1.86801 * 120.00148 * 334.01985 * 13 11 10 16 16 H 1.48504 * 109.47333 * 95.06682 * 15 13 11 17 17 H 1.48496 * 109.47482 * 215.07403 * 15 13 11 18 18 H 1.48503 * 109.46497 * 335.07058 * 15 13 11 19 19 C 1.46494 * 120.00456 * 84.81182 * 10 9 8 20 20 C 1.50690 * 109.47513 * 87.72005 * 19 10 9 21 21 C 1.38230 * 120.00471 * 272.17998 * 20 19 10 22 22 C 1.38241 * 120.00507 * 179.76542 * 21 20 19 23 23 C 1.38236 * 119.99491 * 0.50300 * 22 21 20 24 24 C 1.38243 * 120.00091 * 359.74851 * 23 22 21 25 25 C 1.38236 * 119.99663 * 92.44841 * 20 19 10 26 26 C 1.38580 * 119.36143 * 0.02562 * 8 7 6 27 27 N 1.31509 * 120.90565 * 359.73223 * 26 8 7 28 28 H 1.09006 * 109.46925 * 300.00207 * 1 2 3 29 29 H 1.08986 * 109.47296 * 60.00381 * 1 2 3 30 30 H 1.08997 * 109.46811 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.47060 * 359.94947 * 6 5 3 32 32 H 1.08002 * 120.75296 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47212 * 205.74111 * 9 8 7 34 34 H 1.08996 * 109.46981 * 325.74603 * 9 8 7 35 35 H 0.97007 * 119.99717 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.46943 * 207.72935 * 19 10 9 37 37 H 1.09004 * 109.46654 * 327.72150 * 19 10 9 38 38 H 1.08005 * 120.00090 * 359.97438 * 21 20 19 39 39 H 1.07998 * 120.00268 * 180.23061 * 22 21 20 40 40 H 1.07997 * 119.99920 * 179.72346 * 23 22 21 41 41 H 1.07999 * 120.00086 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.00445 * 0.02562 * 25 20 19 43 43 H 1.08000 * 119.54936 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 -0.0005 5 6 3.5420 1.2776 -0.0062 6 6 4.1687 2.5222 -0.0120 7 6 5.5534 2.5786 -0.0173 8 6 6.2636 1.3882 -0.0160 9 6 7.7706 1.4014 -0.0221 10 7 8.2635 1.5130 1.3530 11 6 8.5842 2.7407 1.8677 12 1 8.4389 2.9401 2.9192 13 6 9.0962 3.7290 1.0383 14 7 8.9343 4.9978 1.3488 15 14 10.0145 3.2584 -0.5188 16 1 9.0773 3.2752 -1.6706 17 1 11.1118 4.2296 -0.7591 18 1 10.5846 1.8958 -0.3644 19 6 8.4134 0.3112 2.1772 20 6 9.7786 -0.2856 1.9518 21 6 9.9761 -1.1923 0.9272 22 6 11.2296 -1.7361 0.7174 23 6 12.2833 -1.3810 1.5387 24 6 12.0847 -0.4782 2.5666 25 6 10.8323 0.0695 2.7731 26 6 5.5746 0.1859 -0.0101 27 7 4.2597 0.1609 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5835 3.4300 -0.0128 32 1 6.0674 3.5285 -0.0214 33 1 8.1403 0.4774 -0.4667 34 1 8.1241 2.2519 -0.6049 35 1 9.2924 5.6884 0.7693 36 1 8.3015 0.5756 3.2287 37 1 7.6492 -0.4157 1.9020 38 1 9.1517 -1.4733 0.2885 39 1 11.3846 -2.4416 -0.0855 40 1 13.2615 -1.8092 1.3776 41 1 12.9078 -0.2011 3.2085 42 1 10.6771 0.7742 3.5766 43 1 6.1249 -0.7434 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237447481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:05 Heat of formation + Delta-G solvation = -6.156943 kcal Electronic energy + Delta-G solvation = -26931.636295 eV Core-core repulsion = 23135.420495 eV Total energy + Delta-G solvation = -3796.215800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90720 -40.77465 -39.99571 -37.79898 -37.55544 -34.15248 -33.93357 -32.96890 -31.77213 -31.61739 -29.28068 -27.83500 -27.49600 -25.01911 -24.49705 -23.51278 -23.22541 -22.22036 -21.54361 -19.37371 -18.91603 -18.42021 -17.69324 -17.50473 -17.36483 -16.94402 -16.31733 -16.18178 -15.94293 -15.74464 -15.67688 -15.11122 -14.76511 -14.60626 -14.48251 -14.13499 -14.12257 -14.01962 -13.89072 -13.59781 -13.24219 -13.02775 -12.90277 -12.49203 -12.33981 -12.11422 -12.03762 -11.96377 -11.83829 -11.64553 -11.61739 -10.87235 -10.75261 -10.57470 -10.15085 -9.65893 -9.49294 -8.95596 -8.21270 -5.51269 -0.58148 0.21465 0.62243 0.66335 1.24827 1.29439 1.44526 1.53028 1.53503 2.39294 2.68366 2.99633 3.08388 3.13231 3.58588 3.76292 3.81923 3.88836 3.99198 4.10780 4.13655 4.23643 4.29163 4.31023 4.33516 4.40706 4.48469 4.54839 4.68101 4.71230 4.75714 4.79227 4.92422 4.97843 5.06250 5.16407 5.29177 5.31520 5.33333 5.53184 5.71578 5.74250 5.83457 5.98934 6.15062 6.30349 6.40915 6.79340 6.90495 7.58427 7.96772 8.97351 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.003656 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.900145 B = 7656.971553 C = 8969.450775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.531 3.469 4 O -0.524 6.524 5 C 0.056 3.944 6 C -0.101 4.101 7 C -0.073 4.073 8 C -0.101 4.101 9 C 0.165 3.835 10 N -0.590 5.590 11 C -0.245 4.245 12 H 0.048 0.952 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.916 3.084 16 H -0.270 1.270 17 H -0.318 1.318 18 H -0.256 1.256 19 C 0.181 3.819 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.125 4.125 26 C 0.105 3.895 27 N -0.444 5.444 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -15.116 -4.109 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.258 6.258 3 C 0.375 3.625 4 O -0.413 6.413 5 C -0.080 4.080 6 C -0.121 4.121 7 C -0.099 4.099 8 C -0.106 4.106 9 C 0.039 3.961 10 N -0.310 5.310 11 C -0.375 4.375 12 H 0.065 0.935 13 C -0.201 4.201 14 N -0.579 5.579 15 Si 0.745 3.255 16 H -0.198 1.198 17 H -0.247 1.247 18 H -0.180 1.180 19 C 0.056 3.944 20 C -0.103 4.103 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.056 4.056 27 N -0.155 5.155 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.029 -15.462 -4.096 17.094 hybrid contribution 0.973 1.845 -0.369 2.118 sum -5.056 -13.617 -4.465 15.196 Atomic orbital electron populations 1.23681 0.74100 1.06108 1.02864 1.86667 1.25251 1.30895 1.82971 1.20832 0.87872 0.81840 0.71955 1.90814 1.66375 1.36867 1.47238 1.19950 0.90801 0.90536 1.06714 1.22083 0.95019 0.98310 0.96700 1.21573 0.93118 0.99669 0.95584 1.22220 0.99770 0.94102 0.94471 1.20345 0.87065 1.01668 0.87003 1.44187 1.72361 1.02807 1.11619 1.18594 1.36158 0.88020 0.94731 0.93467 1.25735 0.99100 0.94678 1.00631 1.70013 1.46736 1.00224 1.40878 0.86335 0.79162 0.78389 0.81598 1.19765 1.24695 1.17952 1.20071 0.91704 0.87373 0.95232 1.20875 0.98008 0.95659 0.95799 1.21291 0.98353 0.97204 0.97528 1.21444 0.92842 1.00532 0.99918 1.21387 0.99946 0.98534 0.95742 1.21371 0.96921 0.97936 0.99135 1.21173 0.93769 0.99288 1.00149 1.23090 0.88524 0.98294 0.95695 1.67617 1.08745 1.29735 1.09391 0.91655 0.91435 0.84629 0.83178 0.85241 0.89320 0.93081 0.92866 0.92975 0.90138 0.84511 0.83854 0.84180 0.85225 0.87637 0.78927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.34 -9.13 10.38 -55.88 -0.58 -9.71 16 3 C 0.53 16.48 7.95 70.43 0.56 17.04 16 4 O -0.52 -17.62 16.11 20.06 0.32 -17.30 16 5 C 0.06 1.80 6.75 41.88 0.28 2.09 16 6 C -0.10 -3.33 9.63 22.62 0.22 -3.11 16 7 C -0.07 -2.62 9.86 22.44 0.22 -2.40 16 8 C -0.10 -3.35 5.48 -19.69 -0.11 -3.46 16 9 C 0.16 5.93 4.54 85.63 0.39 6.32 16 10 N -0.59 -23.99 2.13 -710.70 -1.51 -25.50 16 11 C -0.25 -12.50 9.92 84.03 0.83 -11.66 16 12 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 13 C 0.00 -0.21 5.24 84.86 0.44 0.24 16 14 N -0.94 -54.54 13.97 21.65 0.30 -54.24 16 15 Si 0.92 42.69 25.09 68.60 1.72 44.41 16 16 H -0.27 -11.82 6.60 99.48 0.66 -11.17 16 17 H -0.32 -15.65 7.11 99.48 0.71 -14.95 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.18 6.15 5.81 85.63 0.50 6.65 16 20 C -0.10 -3.30 5.46 -19.87 -0.11 -3.41 16 21 C -0.13 -3.45 9.50 22.27 0.21 -3.24 16 22 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 23 C -0.14 -3.50 10.05 22.27 0.22 -3.27 16 24 C -0.14 -3.94 10.05 22.27 0.22 -3.71 16 25 C -0.12 -4.23 9.69 22.27 0.22 -4.02 16 26 C 0.11 2.99 10.77 84.82 0.91 3.91 16 27 N -0.44 -13.81 10.12 -184.95 -1.87 -15.68 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.15 4.65 7.64 -2.91 -0.02 4.63 16 32 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 33 H 0.09 2.62 7.54 -2.38 -0.02 2.60 16 34 H 0.05 2.10 3.10 -2.39 -0.01 2.10 16 35 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 36 H 0.05 1.89 7.95 -2.39 -0.02 1.87 16 37 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 38 H 0.14 3.03 7.79 -2.91 -0.02 3.01 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 42 H 0.11 3.76 8.06 -2.91 -0.02 3.73 16 43 H 0.19 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -66.24 371.06 5.79 -60.45 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.97 Total: 20.97 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 6.44 Total: -3.41 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.08 Total: -95.42 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.26 Total: -27.01 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.72 Total: 44.41 kcal Total: -66.24 5.79 -60.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237447481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.295 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds