Wall clock time and date at job start Tue Mar 31 2020 14:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46708 * 111.00143 * 2 1 4 4 C 1.53422 * 108.65975 * 285.88376 * 3 2 1 5 5 O 1.43178 * 107.82192 * 296.77004 * 4 3 2 6 6 C 1.36041 * 116.59174 * 44.85288 * 5 4 3 7 7 C 1.38615 * 118.88036 * 165.62218 * 6 5 4 8 8 C 1.39884 * 118.49581 * 179.74358 * 7 6 5 9 9 C 1.48358 * 120.57240 * 179.97438 * 8 7 6 10 10 C 1.39379 * 120.06647 * 180.02562 * 9 8 7 11 11 C 1.37921 * 119.92843 * 179.97438 * 10 9 8 12 12 C 1.38820 * 120.06786 * 0.02562 * 11 10 9 13 13 O 1.35892 * 119.92961 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99665 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00309 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47160 * 89.99730 * 19 17 15 21 21 H 1.48503 * 109.47061 * 209.99752 * 19 17 15 22 22 H 1.48500 * 109.46598 * 329.99398 * 19 17 15 23 23 C 1.38821 * 120.13562 * 0.26885 * 12 11 10 24 24 C 1.37923 * 120.06556 * 359.45390 * 23 12 11 25 25 C 1.39161 * 118.86226 * 0.20775 * 8 7 6 26 26 N 1.31632 * 120.82122 * 359.50849 * 25 8 7 27 27 C 1.32931 * 122.21060 * 0.63105 * 26 25 8 28 28 H 1.08998 * 109.47584 * 59.99408 * 1 2 3 29 29 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46824 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.60839 * 166.13071 * 3 2 1 32 32 H 1.09005 * 109.74348 * 45.71447 * 3 2 1 33 33 H 1.09005 * 109.79085 * 177.19218 * 4 3 2 34 34 H 1.09006 * 109.79140 * 56.35246 * 4 3 2 35 35 H 1.08006 * 120.75771 * 359.76485 * 7 6 5 36 36 H 1.07996 * 120.03623 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.96464 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47054 * 299.99725 * 14 13 12 39 39 H 1.09000 * 109.47187 * 59.99780 * 14 13 12 40 40 H 0.96992 * 120.00510 * 180.02562 * 18 17 15 41 41 H 1.07994 * 119.96413 * 179.70594 * 23 12 11 42 42 H 1.07998 * 120.03527 * 180.29806 * 24 23 12 43 43 H 1.08000 * 119.59015 * 179.80942 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3696 0.0000 4 6 1.7993 1.9705 -1.3981 5 8 2.5776 1.1988 -2.3194 6 6 2.5050 -0.1539 -2.1941 7 6 2.9830 -0.9483 -3.2246 8 6 2.9094 -2.3382 -3.0850 9 6 3.4068 -3.2319 -4.1597 10 6 3.3278 -4.6153 -4.0097 11 6 3.7906 -5.4435 -5.0108 12 6 4.3352 -4.9005 -6.1665 13 8 4.7909 -5.7191 -7.1508 14 6 5.3385 -5.0936 -8.3131 15 6 5.7889 -6.1511 -9.2877 16 1 5.6685 -7.1964 -9.0440 17 6 6.3535 -5.7843 -10.4908 18 7 6.7470 -6.7072 -11.3411 19 14 6.5610 -3.9763 -10.9126 20 1 7.8842 -3.5045 -10.4313 21 1 6.4776 -3.7987 -12.3846 22 1 5.4861 -3.1888 -10.2572 23 6 4.4209 -3.5231 -6.3161 24 6 3.9545 -2.6896 -5.3210 25 6 2.3570 -2.8683 -1.9229 26 7 1.9186 -2.0801 -0.9641 27 6 1.9679 -0.7550 -1.0581 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0565 1.3539 0.2461 32 1 1.4580 1.9701 0.7345 33 1 2.1388 3.0063 -1.4054 34 1 0.7462 1.9245 -1.6756 35 1 3.4031 -0.5042 -4.1150 36 1 2.9046 -5.0383 -3.1107 37 1 3.7301 -6.5156 -4.8951 38 1 4.5785 -4.4677 -8.7811 39 1 6.1907 -4.4774 -8.0267 40 1 7.1446 -6.4491 -12.1874 41 1 4.8494 -3.1036 -7.2143 42 1 4.0170 -1.6180 -5.4400 43 1 2.2915 -3.9397 -1.8042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239614109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:59 Heat of formation + Delta-G solvation = 6.733630 kcal Electronic energy + Delta-G solvation = -26106.712706 eV Core-core repulsion = 22311.055883 eV Total energy + Delta-G solvation = -3795.656822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72325 -39.82016 -38.71471 -37.20191 -36.65151 -33.05507 -32.57087 -31.77969 -30.87455 -29.67628 -28.79986 -27.87699 -26.03221 -24.86437 -23.98248 -22.94991 -22.07009 -21.24817 -20.38394 -18.49069 -17.95775 -17.56569 -17.39629 -16.69747 -15.84900 -15.63841 -15.46951 -15.28437 -14.99001 -14.95023 -14.73147 -14.51374 -14.10005 -13.77324 -13.62841 -13.37085 -12.91892 -12.88102 -12.65919 -12.48847 -12.41825 -12.15938 -11.96280 -11.91168 -11.63234 -11.28305 -11.14774 -10.70965 -10.62210 -10.15030 -10.04013 -9.68788 -9.41317 -9.05600 -8.87896 -8.80010 -8.52939 -7.42240 -6.28607 -4.31182 0.47297 1.04315 1.53630 1.89762 2.75392 2.93014 3.13493 3.19620 3.21318 3.47313 3.92791 4.03730 4.09179 4.19713 4.29418 4.37260 4.43642 4.53333 4.61576 4.72269 4.79748 4.89557 4.92119 5.01242 5.01680 5.04584 5.23775 5.28686 5.41558 5.45051 5.52006 5.60409 5.79064 5.93804 6.03028 6.16337 6.22694 6.24357 6.42733 6.52634 6.63895 6.65062 6.67821 6.90460 6.96478 7.31903 7.79772 7.90449 8.43467 8.80424 9.26749 10.83596 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002272 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.212344 B =12322.513159 C =13282.062877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.481 5.481 3 C 0.020 3.980 4 C 0.018 3.982 5 O -0.304 6.304 6 C 0.050 3.950 7 C -0.096 4.096 8 C -0.043 4.043 9 C -0.114 4.114 10 C -0.061 4.061 11 C -0.163 4.163 12 C 0.163 3.837 13 O -0.299 6.299 14 C 0.166 3.834 15 C -0.530 4.530 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.886 5.886 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.215 4.215 24 C -0.059 4.059 25 C 0.089 3.911 26 N -0.449 5.449 27 C 0.224 3.776 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 17.831 22.250 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.199 5.199 3 C -0.108 4.108 4 C -0.059 4.059 5 O -0.217 6.217 6 C -0.001 4.001 7 C -0.122 4.122 8 C -0.046 4.046 9 C -0.115 4.115 10 C -0.079 4.079 11 C -0.182 4.182 12 C 0.114 3.886 13 O -0.210 6.210 14 C 0.093 3.907 15 C -0.568 4.568 16 H 0.105 0.895 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.699 3.301 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.234 4.234 24 C -0.077 4.077 25 C -0.071 4.071 26 N -0.159 5.159 27 C -0.006 4.006 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.046 17.153 23.117 31.205 hybrid contribution 0.339 1.939 -1.732 2.622 sum -11.707 19.093 21.386 30.967 Atomic orbital electron populations 1.22532 0.84055 1.03885 1.01081 1.58279 1.09160 1.12058 1.40415 1.23002 1.03189 0.87654 0.96994 1.23639 0.96055 0.96230 0.89961 1.86320 1.65486 1.13957 1.55943 1.19707 1.02515 0.84010 0.93843 1.20944 1.01325 0.91918 0.98052 1.19554 0.97644 0.92062 0.95331 1.18230 1.06275 0.92475 0.94503 1.20892 0.97240 0.91802 0.97974 1.20390 1.04420 1.00681 0.92698 1.19464 0.90486 0.89497 0.89124 1.86184 1.72607 1.35244 1.26966 1.21060 0.92748 0.95581 0.81339 1.20756 1.41314 0.94674 1.00061 0.89501 1.24706 0.94518 0.97802 0.95489 1.69844 1.40266 1.32979 1.09240 0.86893 0.79386 0.85260 0.78554 1.19583 1.20382 1.18945 1.21340 1.07418 0.92946 1.01722 1.20940 0.95402 0.99295 0.92067 1.22612 0.96324 0.99706 0.88468 1.67151 1.16690 1.03013 1.29087 1.19437 1.02530 0.90290 0.88335 0.94935 0.89857 0.90199 0.88569 0.87657 0.86400 0.91287 0.83728 0.85312 0.84847 0.96180 0.96632 0.91983 0.84995 0.85991 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.33 60.06 0.56 0.78 16 2 N -0.48 -4.60 4.96 -180.67 -0.90 -5.50 16 3 C 0.02 0.13 6.00 -3.71 -0.02 0.11 16 4 C 0.02 0.12 7.07 37.38 0.26 0.38 16 5 O -0.30 -3.22 10.41 -19.87 -0.21 -3.43 16 6 C 0.05 0.59 6.47 -39.05 -0.25 0.34 16 7 C -0.10 -1.16 9.43 -38.83 -0.37 -1.52 16 8 C -0.04 -0.53 5.89 -104.77 -0.62 -1.15 16 9 C -0.11 -1.51 5.88 -104.88 -0.62 -2.13 16 10 C -0.06 -0.79 9.43 -39.27 -0.37 -1.16 16 11 C -0.16 -2.51 9.97 -39.48 -0.39 -2.91 16 12 C 0.16 3.02 6.69 -39.15 -0.26 2.76 16 13 O -0.30 -6.75 10.12 -19.40 -0.20 -6.95 16 14 C 0.17 4.00 3.56 36.01 0.13 4.13 16 15 C -0.53 -15.08 9.99 -34.44 -0.34 -15.42 16 16 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 19 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 23 C -0.22 -3.63 9.02 -39.48 -0.36 -3.99 16 24 C -0.06 -0.83 9.44 -39.27 -0.37 -1.20 16 25 C 0.09 1.05 10.59 -17.29 -0.18 0.87 16 26 N -0.45 -5.75 10.25 -12.01 -0.12 -5.87 16 27 C 0.22 2.68 5.95 -154.28 -0.92 1.76 16 28 H 0.03 0.22 6.68 -51.93 -0.35 -0.13 16 29 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.38 8.00 -51.93 -0.42 -0.04 16 33 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.41 6.69 -51.93 -0.35 0.06 16 35 H 0.15 1.56 6.32 -52.48 -0.33 1.23 16 36 H 0.13 1.24 6.23 -52.49 -0.33 0.91 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 39 H 0.02 0.37 7.07 -51.93 -0.37 0.00 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 2.25 6.28 -52.49 -0.33 1.92 16 42 H 0.12 1.44 6.27 -52.49 -0.33 1.11 16 43 H 0.16 1.54 6.21 -52.49 -0.33 1.21 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -32.62 351.38 -9.40 -42.03 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.16 Total: 0.58 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -4.22 Total: -16.24 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.25 Total: -36.92 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.40 Total: -10.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.62 -9.40 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239614109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.762 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds