Wall clock time and date at job start Tue Mar 31 2020 14:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46708 * 111.00143 * 2 1 4 4 C 1.53422 * 108.65975 * 285.88376 * 3 2 1 5 5 O 1.43178 * 107.82192 * 296.77004 * 4 3 2 6 6 C 1.36041 * 116.59174 * 44.85288 * 5 4 3 7 7 C 1.38615 * 118.88036 * 165.62218 * 6 5 4 8 8 C 1.39884 * 118.49581 * 179.74358 * 7 6 5 9 9 C 1.48358 * 120.57240 * 179.97438 * 8 7 6 10 10 C 1.39379 * 120.06647 * 180.02562 * 9 8 7 11 11 C 1.37921 * 119.92843 * 179.97438 * 10 9 8 12 12 C 1.38820 * 120.06786 * 0.02562 * 11 10 9 13 13 O 1.35892 * 119.92961 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99665 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00309 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47160 * 89.99730 * 19 17 15 21 21 H 1.48503 * 109.47061 * 209.99752 * 19 17 15 22 22 H 1.48500 * 109.46598 * 329.99398 * 19 17 15 23 23 C 1.38821 * 120.13562 * 0.26885 * 12 11 10 24 24 C 1.37923 * 120.06556 * 359.45390 * 23 12 11 25 25 C 1.39161 * 118.86226 * 0.20775 * 8 7 6 26 26 N 1.31632 * 120.82122 * 359.50849 * 25 8 7 27 27 C 1.32931 * 122.21060 * 0.63105 * 26 25 8 28 28 H 1.08998 * 109.47584 * 59.99408 * 1 2 3 29 29 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46824 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.60839 * 166.13071 * 3 2 1 32 32 H 1.09005 * 109.74348 * 45.71447 * 3 2 1 33 33 H 1.09005 * 109.79085 * 177.19218 * 4 3 2 34 34 H 1.09006 * 109.79140 * 56.35246 * 4 3 2 35 35 H 1.08006 * 120.75771 * 359.76485 * 7 6 5 36 36 H 1.07996 * 120.03623 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.96464 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47054 * 299.99725 * 14 13 12 39 39 H 1.09000 * 109.47187 * 59.99780 * 14 13 12 40 40 H 0.96992 * 120.00510 * 180.02562 * 18 17 15 41 41 H 1.07994 * 119.96413 * 179.70594 * 23 12 11 42 42 H 1.07998 * 120.03527 * 180.29806 * 24 23 12 43 43 H 1.08000 * 119.59015 * 179.80942 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3696 0.0000 4 6 1.7993 1.9705 -1.3981 5 8 2.5776 1.1988 -2.3194 6 6 2.5050 -0.1539 -2.1941 7 6 2.9830 -0.9483 -3.2246 8 6 2.9094 -2.3382 -3.0850 9 6 3.4068 -3.2319 -4.1597 10 6 3.3278 -4.6153 -4.0097 11 6 3.7906 -5.4435 -5.0108 12 6 4.3352 -4.9005 -6.1665 13 8 4.7909 -5.7191 -7.1508 14 6 5.3385 -5.0936 -8.3131 15 6 5.7889 -6.1511 -9.2877 16 1 5.6685 -7.1964 -9.0440 17 6 6.3535 -5.7843 -10.4908 18 7 6.7470 -6.7072 -11.3411 19 14 6.5610 -3.9763 -10.9126 20 1 7.8842 -3.5045 -10.4313 21 1 6.4776 -3.7987 -12.3846 22 1 5.4861 -3.1888 -10.2572 23 6 4.4209 -3.5231 -6.3161 24 6 3.9545 -2.6896 -5.3210 25 6 2.3570 -2.8683 -1.9229 26 7 1.9186 -2.0801 -0.9641 27 6 1.9679 -0.7550 -1.0581 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0565 1.3539 0.2461 32 1 1.4580 1.9701 0.7345 33 1 2.1388 3.0063 -1.4054 34 1 0.7462 1.9245 -1.6756 35 1 3.4031 -0.5042 -4.1150 36 1 2.9046 -5.0383 -3.1107 37 1 3.7301 -6.5156 -4.8951 38 1 4.5785 -4.4677 -8.7811 39 1 6.1907 -4.4774 -8.0267 40 1 7.1446 -6.4491 -12.1874 41 1 4.8494 -3.1036 -7.2143 42 1 4.0170 -1.6180 -5.4400 43 1 2.2915 -3.9397 -1.8042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239614109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:58 Heat of formation + Delta-G solvation = -14.736643 kcal Electronic energy + Delta-G solvation = -26107.643727 eV Core-core repulsion = 22311.055883 eV Total energy + Delta-G solvation = -3796.587843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48293 -41.05522 -39.70499 -38.29167 -37.54435 -35.04202 -33.70079 -32.63452 -32.00836 -30.85684 -30.02360 -29.04224 -26.73721 -25.77377 -25.13399 -24.33679 -23.08614 -22.53781 -21.28534 -19.67004 -19.17717 -18.53895 -18.34188 -18.23055 -16.95073 -16.63714 -16.61654 -16.54934 -16.07914 -16.01720 -15.82183 -15.39647 -15.09536 -14.89301 -14.64456 -14.56308 -14.22670 -13.96760 -13.77505 -13.59766 -13.32576 -13.14327 -12.97824 -12.94656 -12.85945 -12.61578 -12.21417 -12.12509 -12.00615 -11.85810 -11.41798 -11.12554 -10.91599 -10.66695 -10.01327 -9.81631 -9.45825 -8.56045 -8.44567 -6.55539 -0.49494 0.17550 0.38181 0.78110 1.30670 1.33412 1.43411 2.09145 2.23227 2.26760 2.51820 2.53369 2.87321 2.99424 3.25348 3.59047 3.68922 3.73118 3.76183 3.89353 3.95174 3.97122 4.03403 4.21006 4.28231 4.32999 4.40261 4.44686 4.52968 4.62234 4.64798 4.69396 4.76165 4.79422 4.89403 4.95985 5.05310 5.15129 5.21494 5.36830 5.47666 5.52227 5.64188 5.74559 5.80789 5.99098 6.14915 6.48950 6.72265 6.94212 7.08338 8.71805 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002272 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.212344 B =12322.513159 C =13282.062877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.496 5.496 3 C 0.019 3.981 4 C 0.013 3.987 5 O -0.319 6.319 6 C 0.040 3.960 7 C -0.100 4.100 8 C -0.057 4.057 9 C -0.098 4.098 10 C -0.053 4.053 11 C -0.165 4.165 12 C 0.118 3.882 13 O -0.330 6.330 14 C 0.181 3.819 15 C -0.555 4.555 16 H 0.036 0.964 17 C 0.020 3.980 18 N -0.934 5.934 19 Si 0.950 3.050 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.242 1.242 23 C -0.223 4.223 24 C -0.061 4.061 25 C 0.091 3.909 26 N -0.471 5.471 27 C 0.223 3.777 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.140 0.860 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.276 0.724 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 21.643 24.541 35.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.215 5.215 3 C -0.108 4.108 4 C -0.063 4.063 5 O -0.232 6.232 6 C -0.011 4.011 7 C -0.126 4.126 8 C -0.060 4.060 9 C -0.099 4.099 10 C -0.071 4.071 11 C -0.184 4.184 12 C 0.071 3.929 13 O -0.244 6.244 14 C 0.107 3.893 15 C -0.592 4.592 16 H 0.054 0.946 17 C -0.180 4.180 18 N -0.572 5.572 19 Si 0.771 3.229 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.165 1.165 23 C -0.242 4.242 24 C -0.079 4.079 25 C -0.069 4.069 26 N -0.183 5.183 27 C -0.007 4.007 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.145 0.855 42 H 0.164 0.836 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.303 20.979 25.451 35.564 hybrid contribution 0.598 0.813 -2.167 2.390 sum -12.705 21.792 23.284 34.328 Atomic orbital electron populations 1.22576 0.82703 1.03406 1.02674 1.58354 1.10332 1.13491 1.39300 1.23149 1.03164 0.86557 0.97960 1.23969 0.96239 0.97008 0.89066 1.86299 1.66281 1.13344 1.57255 1.19768 1.02687 0.84846 0.93797 1.21143 1.00864 0.92027 0.98532 1.19453 0.99095 0.92086 0.95387 1.18439 1.04322 0.92893 0.94213 1.21244 0.96044 0.91493 0.98311 1.20608 1.03969 1.01546 0.92232 1.19829 0.93368 0.90207 0.89468 1.86093 1.74149 1.36576 1.27551 1.20679 0.93218 0.93951 0.81485 1.21015 1.42437 0.93686 1.02105 0.94569 1.25774 0.93501 1.03846 0.94863 1.69998 1.41184 1.36040 1.09998 0.85686 0.80508 0.78042 0.78696 1.18140 1.19529 1.16538 1.21367 1.07981 0.92463 1.02395 1.21173 0.94835 1.00286 0.91573 1.22946 0.95289 1.00693 0.87956 1.67231 1.17703 1.03688 1.29630 1.19791 1.01710 0.90398 0.88808 0.94351 0.91440 0.87527 0.89396 0.84304 0.83506 0.90566 0.82871 0.81678 0.84217 0.95416 0.95567 0.91460 0.85543 0.83579 0.79809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.33 127.69 1.19 1.57 16 2 N -0.50 -8.25 4.96 -725.51 -3.60 -11.85 16 3 C 0.02 0.19 6.00 86.48 0.52 0.71 16 4 C 0.01 0.13 7.07 72.12 0.51 0.64 16 5 O -0.32 -5.98 10.41 -94.02 -0.98 -6.96 16 6 C 0.04 0.87 6.47 22.61 0.15 1.01 16 7 C -0.10 -2.19 9.43 22.76 0.21 -1.97 16 8 C -0.06 -1.28 5.89 -19.96 -0.12 -1.40 16 9 C -0.10 -2.39 5.88 -20.03 -0.12 -2.51 16 10 C -0.05 -1.26 9.43 22.47 0.21 -1.05 16 11 C -0.17 -5.02 9.97 22.33 0.22 -4.79 16 12 C 0.12 4.43 6.69 22.55 0.15 4.58 16 13 O -0.33 -15.63 10.12 -92.33 -0.93 -16.57 16 14 C 0.18 8.92 3.56 71.24 0.25 9.18 16 15 C -0.55 -33.17 9.99 25.60 0.26 -32.92 16 16 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 17 C 0.02 1.13 5.47 84.65 0.46 1.59 16 18 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 19 Si 0.95 41.86 27.47 68.60 1.88 43.75 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 23 C -0.22 -7.42 9.02 22.33 0.20 -7.22 16 24 C -0.06 -1.62 9.44 22.47 0.21 -1.40 16 25 C 0.09 1.94 10.59 84.94 0.90 2.84 16 26 N -0.47 -11.19 10.25 -191.92 -1.97 -13.16 16 27 C 0.22 4.90 5.95 132.87 0.79 5.69 16 28 H 0.04 0.41 6.68 -2.39 -0.02 0.39 16 29 H 0.07 1.02 8.02 -2.39 -0.02 1.00 16 30 H 0.11 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 0.40 8.00 -2.38 -0.02 0.38 16 33 H 0.15 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.65 6.69 -2.38 -0.02 0.64 16 35 H 0.15 2.96 6.32 -2.91 -0.02 2.94 16 36 H 0.17 2.63 6.23 -2.91 -0.02 2.61 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 38 H 0.03 1.32 6.73 -2.38 -0.02 1.30 16 39 H 0.03 1.23 7.07 -2.39 -0.02 1.21 16 40 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.13 4.25 6.28 -2.91 -0.02 4.23 16 42 H 0.15 3.09 6.27 -2.91 -0.02 3.07 16 43 H 0.19 2.90 6.21 -2.91 -0.02 2.88 16 Total: -1.00 -75.11 351.38 1.70 -73.40 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.99 Total: 14.09 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 6.01 Total: -25.46 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -5.27 Total: -82.25 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.91 Total: -23.53 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.75 kcal Total: -75.11 1.70 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239614109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.667 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds