Wall clock time and date at job start Tue Mar 31 2020 14:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35883 * 116.99875 * 2 1 4 4 C 1.39520 * 119.76953 * 0.02562 * 3 2 1 5 5 C 1.37874 * 120.62420 * 179.76373 * 4 3 2 6 6 C 1.39260 * 120.16183 * 0.47264 * 5 4 3 7 7 C 1.47718 * 120.22944 * 179.78755 * 6 5 4 8 8 C 1.39605 * 120.59618 * 129.74328 * 7 6 5 9 9 N 1.31517 * 120.77225 * 180.11248 * 8 7 6 10 10 C 1.33039 * 122.24764 * 0.02562 * 9 8 7 11 11 C 1.39495 * 120.18855 * 359.46809 * 10 9 8 12 12 C 1.38458 * 119.50587 * 0.89976 * 11 10 9 13 13 O 1.36028 * 121.63915 * 180.88734 * 11 10 9 14 14 C 1.43190 * 116.56498 * 345.41049 * 13 11 10 15 15 C 1.53422 * 107.81280 * 44.90961 * 14 13 11 16 16 N 1.38981 * 118.23012 * 179.40560 * 10 9 8 17 17 C 1.46902 * 111.00141 * 34.77796 * 16 10 9 18 18 C 1.41949 * 119.54429 * 359.51129 * 6 5 4 19 19 C 1.40843 * 120.30858 * 180.27543 * 18 6 5 20 20 H 1.08000 * 119.99969 * 333.46148 * 19 18 6 21 21 C 1.39998 * 119.99708 * 153.46246 * 19 18 6 22 22 N 1.30818 * 120.00308 * 343.56723 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 163.57090 * 21 19 18 24 24 H 1.48493 * 109.47426 * 94.63421 * 23 21 19 25 25 H 1.48494 * 109.46956 * 214.64031 * 23 21 19 26 26 H 1.48505 * 109.46878 * 334.63824 * 23 21 19 27 27 C 1.37869 * 119.77071 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46812 * 299.99677 * 1 2 3 30 30 H 1.08995 * 109.47220 * 59.99586 * 1 2 3 31 31 H 1.07991 * 119.68922 * 0.02562 * 4 3 2 32 32 H 1.08008 * 119.91742 * 180.25785 * 5 4 3 33 33 H 1.07997 * 119.61811 * 0.09295 * 8 7 6 34 34 H 1.07998 * 120.76124 * 179.52313 * 12 11 10 35 35 H 1.08990 * 109.79768 * 164.49540 * 14 13 11 36 36 H 1.09008 * 109.78722 * 285.33682 * 14 13 11 37 37 H 1.08998 * 109.59728 * 56.59337 * 15 14 13 38 38 H 1.09005 * 109.59766 * 176.90156 * 15 14 13 39 39 H 1.08998 * 109.46371 * 56.05044 * 17 16 10 40 40 H 1.08994 * 109.47241 * 176.05054 * 17 16 10 41 41 H 1.08998 * 109.46946 * 296.05098 * 17 16 10 42 42 H 0.96998 * 119.99820 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.09259 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2812 2.3778 0.0005 5 6 1.8887 3.6154 0.0054 6 6 3.2779 3.7131 0.0000 7 6 3.9303 5.0383 0.0005 8 6 4.9372 5.3343 0.9211 9 7 5.5189 6.5138 0.9261 10 6 5.1843 7.4739 0.0681 11 6 4.1938 7.2468 -0.8875 12 6 3.5493 6.0219 -0.9237 13 8 3.8410 8.2011 -1.7903 14 6 4.2875 9.5345 -1.5201 15 6 5.7603 9.4596 -1.0971 16 7 5.8449 8.6936 0.1559 17 6 7.2471 8.5056 0.5516 18 6 4.0627 2.5302 -0.0001 19 6 5.4688 2.6102 0.0003 20 1 5.9605 3.4764 -0.4173 21 6 6.2291 1.5669 0.5419 22 7 5.6641 0.6835 1.3241 23 14 8.0504 1.4362 0.1477 24 1 8.8373 2.1012 1.2171 25 1 8.4375 0.0049 0.0654 26 1 8.3241 2.0986 -1.1529 27 6 3.4229 1.2774 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2034 2.3110 0.0014 32 1 1.2857 4.5115 0.0100 33 1 5.2419 4.5861 1.6378 34 1 2.7741 5.8268 -1.6500 35 1 4.1920 10.1449 -2.4180 36 1 3.6936 9.9665 -0.7145 37 1 6.3400 8.9656 -1.8768 38 1 6.1464 10.4663 -0.9369 39 1 7.7351 7.8297 -0.1506 40 1 7.7586 9.4680 0.5447 41 1 7.2877 8.0796 1.5540 42 1 6.1910 -0.0391 1.6996 43 1 4.0090 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239614429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:49 Heat of formation + Delta-G solvation = -5.389449 kcal Electronic energy + Delta-G solvation = -27441.655025 eV Core-core repulsion = 23645.472506 eV Total energy + Delta-G solvation = -3796.182519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87900 -38.88410 -37.95907 -36.72088 -36.01823 -33.70593 -31.68821 -31.00522 -29.85213 -29.25905 -28.07144 -26.47583 -25.34547 -25.01444 -24.05139 -22.35227 -21.23809 -20.83027 -19.64932 -17.85548 -17.63399 -16.95375 -16.73175 -16.17158 -15.20798 -15.20524 -14.86712 -14.77499 -14.75575 -14.44428 -14.28082 -14.02737 -13.45677 -13.19023 -12.98279 -12.79995 -12.42523 -12.13954 -12.11455 -11.85028 -11.63481 -11.53163 -11.39289 -11.26607 -11.13506 -11.06304 -10.99539 -10.58384 -10.22491 -10.04419 -9.73755 -9.51650 -9.23424 -8.82836 -8.68397 -7.59377 -7.46126 -6.98287 -6.64601 -4.51893 1.59378 1.88928 2.69267 2.88184 3.03306 3.07191 3.15047 3.44846 3.61350 3.85167 4.25665 4.39885 4.50328 4.53225 4.82881 4.96814 5.00004 5.30869 5.38937 5.45607 5.49129 5.51784 5.62073 5.65382 5.69960 5.75301 5.84246 5.88697 6.04271 6.07338 6.17289 6.25045 6.40574 6.64475 6.73458 6.87869 6.91592 7.04622 7.16733 7.23543 7.32197 7.59297 7.65357 7.70832 7.87353 7.93718 8.26469 8.60303 8.64108 8.72036 8.80497 10.02608 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.004509 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.092125 B = 6208.907207 C = 8253.327909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.316 4.316 5 C -0.035 4.035 6 C -0.206 4.206 7 C -0.011 4.011 8 C 0.116 3.884 9 N -0.484 5.484 10 C 0.213 3.787 11 C 0.041 3.959 12 C -0.102 4.102 13 O -0.316 6.316 14 C 0.058 3.942 15 C 0.015 3.985 16 N -0.478 5.478 17 C 0.040 3.960 18 C 0.159 3.841 19 C -0.447 4.447 20 H 0.084 0.916 21 C 0.079 3.921 22 N -0.775 5.775 23 Si 0.904 3.096 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.260 1.260 27 C -0.192 4.192 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.285 0.715 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 10.159 -3.212 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.335 4.335 5 C -0.054 4.054 6 C -0.208 4.208 7 C -0.014 4.014 8 C -0.044 4.044 9 N -0.197 5.197 10 C -0.017 4.017 11 C -0.008 4.008 12 C -0.128 4.128 13 O -0.229 6.229 14 C -0.017 4.017 15 C -0.112 4.112 16 N -0.196 5.196 17 C -0.107 4.107 18 C 0.156 3.844 19 C -0.475 4.475 20 H 0.102 0.898 21 C -0.142 4.142 22 N -0.398 5.398 23 Si 0.728 3.272 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.183 1.183 27 C -0.212 4.212 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.185 0.815 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.414 10.267 -2.282 10.526 hybrid contribution 0.273 -0.376 -1.063 1.160 sum -0.141 9.891 -3.344 10.442 Atomic orbital electron populations 1.22770 0.80681 1.01932 1.00572 1.86011 1.19585 1.29046 1.89671 1.19014 0.92460 0.82519 0.96821 1.20360 0.97440 0.92412 1.23312 1.20341 0.93150 0.95379 0.96510 1.18302 0.92050 0.90287 1.20170 1.19504 0.95193 0.93314 0.93393 1.22883 0.92603 0.91332 0.97560 1.67290 1.28545 1.01200 1.22703 1.19593 0.96709 0.90440 0.94982 1.19292 0.98471 0.90800 0.92250 1.21048 1.00751 0.90803 1.00242 1.86204 1.74140 1.16624 1.45941 1.23099 0.93518 0.82793 1.02334 1.22887 0.98099 0.99844 0.90410 1.58794 1.15687 1.15395 1.29738 1.22271 0.84858 1.00636 1.02886 1.17181 0.92664 0.88807 0.85723 1.19530 0.90966 1.03546 1.33466 0.89792 1.25953 1.01355 0.94199 0.92681 1.69821 1.38650 1.11121 1.20224 0.86336 0.81876 0.78590 0.80377 1.19194 1.19837 1.18343 1.20496 0.89363 0.99023 1.12277 0.89876 0.93592 0.93653 0.88435 0.88782 0.81459 0.84697 0.87115 0.90925 0.92500 0.88275 0.94709 0.91522 0.89286 0.90418 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.03 10.48 -19.37 -0.20 -7.23 16 3 C 0.14 3.18 6.67 -39.24 -0.26 2.92 16 4 C -0.32 -6.81 9.02 -39.24 -0.35 -7.16 16 5 C -0.04 -0.76 9.52 -39.33 -0.37 -1.14 16 6 C -0.21 -4.75 5.55 -104.22 -0.58 -5.33 16 7 C -0.01 -0.23 4.92 -104.76 -0.52 -0.75 16 8 C 0.12 2.46 9.17 -17.18 -0.16 2.31 16 9 N -0.48 -9.75 8.98 -11.92 -0.11 -9.85 16 10 C 0.21 3.94 6.62 -154.36 -1.02 2.91 16 11 C 0.04 0.75 6.47 -39.03 -0.25 0.50 16 12 C -0.10 -2.00 9.58 -38.75 -0.37 -2.37 16 13 O -0.32 -5.09 10.41 -19.83 -0.21 -5.29 16 14 C 0.06 0.67 7.26 37.38 0.27 0.94 16 15 C 0.02 0.18 5.66 -3.49 -0.02 0.16 16 16 N -0.48 -7.24 4.91 -180.34 -0.89 -8.12 16 17 C 0.04 0.53 9.05 60.07 0.54 1.08 16 18 C 0.16 4.00 5.55 -106.57 -0.59 3.40 16 19 C -0.45 -11.04 7.12 -37.94 -0.27 -11.31 16 20 H 0.08 2.07 6.62 -52.49 -0.35 1.72 16 21 C 0.08 1.87 5.15 -17.32 -0.09 1.78 16 22 N -0.77 -19.02 11.01 55.55 0.61 -18.41 16 23 Si 0.90 18.13 29.59 -169.99 -5.03 13.10 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 27 C -0.19 -4.87 8.59 -38.80 -0.33 -5.21 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.68 7.64 -51.93 -0.40 0.29 16 30 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.10 1.84 6.25 -52.49 -0.33 1.52 16 32 H 0.09 1.81 8.05 -52.48 -0.42 1.39 16 33 H 0.17 3.67 7.30 -52.49 -0.38 3.29 16 34 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 42 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 43 H 0.13 3.39 6.26 -52.48 -0.33 3.06 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -28.54 353.11 -9.40 -37.94 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.51 Total: 8.25 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.39 Total: -15.70 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.38 Total: -36.38 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.41 Total: -12.53 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.54 -9.40 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239614429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.549 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds