Wall clock time and date at job start Tue Mar 31 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35883 * 116.99875 * 2 1 4 4 C 1.39520 * 119.76953 * 0.02562 * 3 2 1 5 5 C 1.37874 * 120.62420 * 179.76373 * 4 3 2 6 6 C 1.39260 * 120.16183 * 0.47264 * 5 4 3 7 7 C 1.47718 * 120.22944 * 179.78755 * 6 5 4 8 8 C 1.39605 * 120.59618 * 129.74328 * 7 6 5 9 9 N 1.31517 * 120.77225 * 180.11248 * 8 7 6 10 10 C 1.33039 * 122.24764 * 0.02562 * 9 8 7 11 11 C 1.39495 * 120.18855 * 359.46809 * 10 9 8 12 12 C 1.38458 * 119.50587 * 0.89976 * 11 10 9 13 13 O 1.36028 * 121.63915 * 180.88734 * 11 10 9 14 14 C 1.43190 * 116.56498 * 345.41049 * 13 11 10 15 15 C 1.53422 * 107.81280 * 44.90961 * 14 13 11 16 16 N 1.38981 * 118.23012 * 179.40560 * 10 9 8 17 17 C 1.46902 * 111.00141 * 34.77796 * 16 10 9 18 18 C 1.41949 * 119.54429 * 359.51129 * 6 5 4 19 19 C 1.40843 * 120.30858 * 180.27543 * 18 6 5 20 20 H 1.08000 * 119.99969 * 333.46148 * 19 18 6 21 21 C 1.39998 * 119.99708 * 153.46246 * 19 18 6 22 22 N 1.30818 * 120.00308 * 343.56723 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 163.57090 * 21 19 18 24 24 H 1.48493 * 109.47426 * 94.63421 * 23 21 19 25 25 H 1.48494 * 109.46956 * 214.64031 * 23 21 19 26 26 H 1.48505 * 109.46878 * 334.63824 * 23 21 19 27 27 C 1.37869 * 119.77071 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46812 * 299.99677 * 1 2 3 30 30 H 1.08995 * 109.47220 * 59.99586 * 1 2 3 31 31 H 1.07991 * 119.68922 * 0.02562 * 4 3 2 32 32 H 1.08008 * 119.91742 * 180.25785 * 5 4 3 33 33 H 1.07997 * 119.61811 * 0.09295 * 8 7 6 34 34 H 1.07998 * 120.76124 * 179.52313 * 12 11 10 35 35 H 1.08990 * 109.79768 * 164.49540 * 14 13 11 36 36 H 1.09008 * 109.78722 * 285.33682 * 14 13 11 37 37 H 1.08998 * 109.59728 * 56.59337 * 15 14 13 38 38 H 1.09005 * 109.59766 * 176.90156 * 15 14 13 39 39 H 1.08998 * 109.46371 * 56.05044 * 17 16 10 40 40 H 1.08994 * 109.47241 * 176.05054 * 17 16 10 41 41 H 1.08998 * 109.46946 * 296.05098 * 17 16 10 42 42 H 0.96998 * 119.99820 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.09259 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2812 2.3778 0.0005 5 6 1.8887 3.6154 0.0054 6 6 3.2779 3.7131 0.0000 7 6 3.9303 5.0383 0.0005 8 6 4.9372 5.3343 0.9211 9 7 5.5189 6.5138 0.9261 10 6 5.1843 7.4739 0.0681 11 6 4.1938 7.2468 -0.8875 12 6 3.5493 6.0219 -0.9237 13 8 3.8410 8.2011 -1.7903 14 6 4.2875 9.5345 -1.5201 15 6 5.7603 9.4596 -1.0971 16 7 5.8449 8.6936 0.1559 17 6 7.2471 8.5056 0.5516 18 6 4.0627 2.5302 -0.0001 19 6 5.4688 2.6102 0.0003 20 1 5.9605 3.4764 -0.4173 21 6 6.2291 1.5669 0.5419 22 7 5.6641 0.6835 1.3241 23 14 8.0504 1.4362 0.1477 24 1 8.8373 2.1012 1.2171 25 1 8.4375 0.0049 0.0654 26 1 8.3241 2.0986 -1.1529 27 6 3.4229 1.2774 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2034 2.3110 0.0014 32 1 1.2857 4.5115 0.0100 33 1 5.2419 4.5861 1.6378 34 1 2.7741 5.8268 -1.6500 35 1 4.1920 10.1449 -2.4180 36 1 3.6936 9.9665 -0.7145 37 1 6.3400 8.9656 -1.8768 38 1 6.1464 10.4663 -0.9369 39 1 7.7351 7.8297 -0.1506 40 1 7.7586 9.4680 0.5447 41 1 7.2877 8.0796 1.5540 42 1 6.1910 -0.0391 1.6996 43 1 4.0090 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239614429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:48 Heat of formation + Delta-G solvation = -22.119776 kcal Electronic energy + Delta-G solvation = -27442.380506 eV Core-core repulsion = 23645.472506 eV Total energy + Delta-G solvation = -3796.908000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20344 -40.53537 -39.39217 -38.14609 -37.45035 -35.47872 -33.23930 -32.34539 -31.57328 -30.54900 -29.51184 -27.92763 -27.04733 -26.27841 -25.35840 -23.79043 -22.84032 -22.42592 -21.10365 -19.55844 -18.97982 -18.21893 -18.14660 -17.84523 -16.85394 -16.48057 -16.38289 -16.33518 -16.30429 -15.65786 -15.45507 -15.25981 -14.99023 -14.67920 -14.49195 -14.30463 -13.99984 -13.61122 -13.54174 -13.21439 -13.12437 -12.86148 -12.78840 -12.75432 -12.57777 -12.43120 -12.19801 -12.13539 -11.81973 -11.73874 -11.37890 -11.08940 -10.89456 -10.32820 -10.10788 -9.40880 -8.96752 -8.73018 -8.30874 -6.37285 0.06634 0.36273 0.96066 1.14025 1.36014 1.46268 1.50962 2.17288 2.24236 2.40563 2.67721 2.78262 2.90165 3.46022 3.53796 3.68045 3.97998 4.06142 4.09864 4.21405 4.24826 4.35289 4.45887 4.48664 4.50275 4.53015 4.54750 4.63457 4.69798 4.74859 4.76296 4.84976 5.00052 5.04518 5.10297 5.25552 5.33205 5.45154 5.52558 5.71786 5.82928 5.87697 5.95141 6.07710 6.14676 6.31404 6.45614 6.87122 6.89597 7.01646 7.10212 8.27478 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.004509 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.092125 B = 6208.907207 C = 8253.327909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.132 3.868 4 C -0.312 4.312 5 C -0.039 4.039 6 C -0.211 4.211 7 C -0.031 4.031 8 C 0.104 3.896 9 N -0.497 5.497 10 C 0.216 3.784 11 C 0.044 3.956 12 C -0.103 4.103 13 O -0.323 6.323 14 C 0.049 3.951 15 C 0.013 3.987 16 N -0.484 5.484 17 C 0.041 3.959 18 C 0.136 3.864 19 C -0.468 4.468 20 H 0.075 0.925 21 C 0.044 3.956 22 N -0.808 5.808 23 Si 0.967 3.033 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.263 1.263 27 C -0.225 4.225 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.142 0.858 39 H 0.023 0.977 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.290 0.710 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 12.943 -4.303 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.088 3.912 4 C -0.331 4.331 5 C -0.057 4.057 6 C -0.213 4.213 7 C -0.034 4.034 8 C -0.054 4.054 9 N -0.211 5.211 10 C -0.016 4.016 11 C -0.006 4.006 12 C -0.130 4.130 13 O -0.237 6.237 14 C -0.025 4.025 15 C -0.113 4.113 16 N -0.202 5.202 17 C -0.105 4.105 18 C 0.133 3.867 19 C -0.496 4.496 20 H 0.093 0.907 21 C -0.174 4.174 22 N -0.432 5.432 23 Si 0.788 3.212 24 H -0.186 1.186 25 H -0.188 1.188 26 H -0.187 1.187 27 C -0.245 4.245 28 H 0.134 0.866 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.042 0.958 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.890 13.058 -3.373 13.516 hybrid contribution 0.287 -1.016 -0.759 1.300 sum -0.603 12.042 -4.131 12.745 Atomic orbital electron populations 1.23158 0.77551 1.04563 1.01582 1.85977 1.22835 1.28278 1.89397 1.19117 0.92150 0.83944 0.96021 1.20682 0.98929 0.91605 1.21884 1.20671 0.92856 0.96537 0.95677 1.18550 0.92859 0.90572 1.19330 1.19390 0.96058 0.93228 0.94709 1.22553 0.93312 0.91705 0.97866 1.67275 1.28865 1.01257 1.23683 1.20025 0.96593 0.91070 0.93915 1.19269 0.97915 0.91147 0.92281 1.21117 1.00945 0.91013 0.99896 1.86199 1.74279 1.18135 1.45095 1.23580 0.93409 0.80757 1.04782 1.23148 0.98338 1.01241 0.88623 1.58863 1.16209 1.13413 1.31723 1.22313 0.84105 1.02574 1.01483 1.17470 0.93322 0.89577 0.86344 1.19557 0.91346 1.03996 1.34721 0.90722 1.26642 1.05080 0.93570 0.92095 1.69877 1.40232 1.11887 1.21233 0.85407 0.77073 0.78877 0.79828 1.18607 1.18776 1.18719 1.20425 0.90586 0.98393 1.15118 0.86647 0.92708 0.92313 0.85283 0.86143 0.83567 0.83719 0.82862 0.90427 0.92584 0.84029 0.95783 0.87462 0.91074 0.89904 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.80 113.37 1.11 1.88 16 2 O -0.35 -15.04 10.48 -92.23 -0.97 -16.00 16 3 C 0.13 6.32 6.67 22.49 0.15 6.47 16 4 C -0.31 -13.24 9.02 22.49 0.20 -13.04 16 5 C -0.04 -1.69 9.52 22.43 0.21 -1.47 16 6 C -0.21 -10.07 5.55 -19.61 -0.11 -10.17 16 7 C -0.03 -1.35 4.92 -19.96 -0.10 -1.45 16 8 C 0.10 4.65 9.17 85.07 0.78 5.43 16 9 N -0.50 -20.39 8.98 -191.61 -1.72 -22.11 16 10 C 0.22 7.79 6.62 132.97 0.88 8.67 16 11 C 0.04 1.56 6.47 22.63 0.15 1.70 16 12 C -0.10 -4.03 9.58 22.81 0.22 -3.82 16 13 O -0.32 -9.57 10.41 -93.87 -0.98 -10.55 16 14 C 0.05 0.93 7.26 72.12 0.52 1.45 16 15 C 0.01 0.24 5.66 86.41 0.49 0.73 16 16 N -0.48 -13.45 4.91 -724.46 -3.56 -17.01 16 17 C 0.04 1.02 9.05 127.69 1.16 2.17 16 18 C 0.14 7.20 5.55 -21.13 -0.12 7.08 16 19 C -0.47 -24.57 7.12 23.33 0.17 -24.41 16 20 H 0.07 3.93 6.62 -2.91 -0.02 3.91 16 21 C 0.04 2.17 5.15 85.27 0.44 2.61 16 22 N -0.81 -41.98 11.01 21.84 0.24 -41.74 16 23 Si 0.97 38.69 29.59 68.60 2.03 40.72 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 C -0.22 -12.09 8.59 22.78 0.20 -11.89 16 28 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.51 7.64 -2.38 -0.02 1.49 16 30 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 31 H 0.13 4.57 6.25 -2.92 -0.02 4.55 16 32 H 0.12 4.47 8.05 -2.91 -0.02 4.44 16 33 H 0.15 6.98 7.30 -2.91 -0.02 6.96 16 34 H 0.15 5.22 8.06 -2.91 -0.02 5.19 16 35 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 40 H 0.11 1.76 8.08 -2.39 -0.02 1.74 16 41 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 42 H 0.29 13.69 8.30 -92.71 -0.77 12.93 16 43 H 0.10 5.89 6.26 -2.91 -0.02 5.87 16 Total: -1.00 -66.26 353.11 2.43 -63.82 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 1.04 Total: 30.92 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 6.35 Total: -28.05 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -5.04 Total: -80.86 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.94 Total: -26.55 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -66.26 2.43 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239614429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.702 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds