Wall clock time and date at job start Tue Mar 31 2020 14:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35533 * 116.99895 * 2 1 4 4 C 1.39113 * 120.48815 * 359.97438 * 3 2 1 5 5 C 1.38322 * 118.63840 * 179.76614 * 4 3 2 6 6 C 1.40069 * 119.57537 * 0.49873 * 5 4 3 7 7 C 1.48265 * 119.51921 * 179.76548 * 6 5 4 8 8 C 1.39542 * 120.06103 * 4.72738 * 7 6 5 9 9 C 1.38089 * 120.16551 * 179.97438 * 8 7 6 10 10 C 1.38081 * 120.28227 * 359.97438 * 9 8 7 11 11 C 1.39640 * 120.11404 * 359.97438 * 10 9 8 12 12 C 1.47858 * 120.08423 * 180.02562 * 11 10 9 13 13 O 1.21543 * 120.00092 * 33.70702 * 12 11 10 14 14 N 1.34778 * 119.99929 * 213.71056 * 12 11 10 15 15 C 1.46506 * 119.99964 * 185.47811 * 14 12 11 16 16 C 1.46499 * 119.99985 * 5.48019 * 14 12 11 17 17 C 1.39154 * 120.05887 * 184.44639 * 7 6 5 18 18 N 1.32177 * 120.95897 * 359.48452 * 6 5 4 19 19 C 1.33572 * 121.46756 * 0.25970 * 18 6 5 20 20 C 1.40997 * 119.83446 * 180.02562 * 19 18 6 21 21 H 1.08000 * 119.99897 * 179.97438 * 20 19 18 22 22 C 1.40027 * 120.00265 * 0.02562 * 20 19 18 23 23 N 1.30778 * 119.99722 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47323 * 60.00050 * 24 22 20 26 26 H 1.48500 * 109.46952 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47251 * 299.99800 * 24 22 20 28 28 H 1.09003 * 109.47510 * 59.99347 * 1 2 3 29 29 H 1.08994 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47140 * 299.99908 * 1 2 3 31 31 H 1.08001 * 120.67984 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.21778 * 180.24127 * 5 4 3 33 33 H 1.07997 * 119.91648 * 359.97202 * 8 7 6 34 34 H 1.08004 * 119.86161 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.94533 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46929 * 90.00260 * 15 14 12 37 37 H 1.08999 * 109.46770 * 209.99908 * 15 14 12 38 38 H 1.09000 * 109.47019 * 329.99796 * 15 14 12 39 39 H 1.09002 * 109.47071 * 5.31664 * 16 14 12 40 40 H 1.08996 * 109.47199 * 125.31955 * 16 14 12 41 41 H 1.09004 * 109.47315 * 245.31688 * 16 14 12 42 42 H 1.07997 * 120.13519 * 359.97438 * 17 7 6 43 43 H 0.96998 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.2965 2.3807 -0.0005 5 6 1.9639 3.5923 0.0044 6 6 3.3645 3.6101 -0.0008 7 6 4.0785 4.9094 -0.0007 8 6 3.3607 6.1015 0.1040 9 6 4.0237 7.3129 0.1048 10 6 5.4001 7.3534 0.0027 11 6 6.1301 6.1676 -0.1016 12 6 7.6040 6.2118 -0.2104 13 8 8.2301 7.0802 0.3651 14 7 8.2533 5.2892 -0.9478 15 6 9.7180 5.2592 -0.9595 16 6 7.4943 4.3165 -1.7377 17 6 5.4662 4.9422 -0.0992 18 7 4.0588 2.4853 -0.0001 19 6 3.4556 1.2936 0.0002 20 6 4.2301 0.1154 0.0014 21 1 3.7452 -0.8496 0.0022 22 6 5.6281 0.1964 0.0028 23 7 6.2152 1.3650 0.0024 24 14 6.6541 -1.3645 0.0051 25 1 6.3423 -2.1637 -1.2071 26 1 8.0960 -1.0090 0.0056 27 1 6.3400 -2.1616 1.2179 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 0.2171 2.3462 -0.0005 32 1 1.4087 4.5187 0.0081 33 1 2.2841 6.0766 0.1846 34 1 3.4632 8.2325 0.1857 35 1 5.9130 8.3039 0.0043 36 1 10.0744 4.6071 -0.1620 37 1 10.0659 4.8811 -1.9208 38 1 10.1033 6.2669 -0.8044 39 1 6.4315 4.5515 -1.6799 40 1 7.8199 4.3593 -2.7771 41 1 7.6669 3.3148 -1.3440 42 1 6.0262 4.0219 -0.1754 43 1 7.1836 1.4212 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239923401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:28 Heat of formation + Delta-G solvation = 7.721432 kcal Electronic energy + Delta-G solvation = -27556.413569 eV Core-core repulsion = 23760.799580 eV Total energy + Delta-G solvation = -3795.613988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09993 -39.08486 -37.98201 -36.57533 -35.35181 -33.84519 -31.54868 -31.26930 -30.45326 -28.71844 -27.61586 -26.64540 -26.23757 -25.50906 -22.96835 -22.56803 -21.28627 -20.65468 -19.05718 -17.60564 -16.93221 -16.75463 -16.32248 -15.80512 -15.69025 -15.42017 -14.85897 -14.85469 -14.48914 -14.03455 -13.61773 -13.38179 -13.12722 -13.01496 -12.90354 -12.65667 -12.58683 -12.29933 -12.17914 -12.01801 -11.72409 -11.52478 -11.36891 -11.25990 -11.13171 -10.77967 -10.62476 -10.53133 -10.45922 -9.93300 -9.62711 -9.55097 -8.65165 -8.52122 -8.37346 -8.25039 -7.89761 -7.01345 -6.57617 -4.51733 1.24201 1.61103 2.64123 2.79518 3.03372 3.06682 3.07998 3.20884 3.28828 3.87993 4.20444 4.30549 4.70709 4.78108 5.18684 5.24233 5.38817 5.44092 5.54202 5.59308 5.61284 5.62519 5.69570 5.77163 5.79451 5.84988 5.88857 5.90573 5.98597 6.12497 6.23718 6.24725 6.32127 6.52462 6.61779 6.67610 6.76796 6.79308 7.03330 7.08912 7.28776 7.33588 7.44629 7.54766 7.74835 8.08038 8.18370 8.38341 8.58771 8.87296 9.85428 10.16605 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.005129 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.576611 B = 5457.958731 C = 7911.417559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.023 4.023 4 C -0.148 4.148 5 C -0.267 4.267 6 C 0.147 3.853 7 C -0.021 4.021 8 C -0.090 4.090 9 C -0.137 4.137 10 C -0.076 4.076 11 C -0.150 4.150 12 C 0.565 3.435 13 O -0.550 6.550 14 N -0.613 5.613 15 C 0.087 3.913 16 C 0.057 3.943 17 C -0.060 4.060 18 N -0.452 5.452 19 C 0.255 3.745 20 C -0.409 4.409 21 H 0.091 0.909 22 C 0.071 3.929 23 N -0.719 5.719 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 4.160 -3.301 5.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.072 4.072 4 C -0.172 4.172 5 C -0.291 4.291 6 C 0.006 3.994 7 C -0.022 4.022 8 C -0.109 4.109 9 C -0.155 4.155 10 C -0.095 4.095 11 C -0.153 4.153 12 C 0.355 3.645 13 O -0.429 6.429 14 N -0.346 5.346 15 C -0.056 4.056 16 C -0.085 4.085 17 C -0.079 4.079 18 N -0.166 5.166 19 C 0.127 3.873 20 C -0.441 4.441 21 H 0.109 0.891 22 C -0.154 4.154 23 N -0.342 5.342 24 Si 0.733 3.267 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.189 0.811 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.678 4.494 -3.015 5.454 hybrid contribution -0.927 -0.590 -0.003 1.099 sum -0.250 3.904 -3.018 4.941 Atomic orbital electron populations 1.22773 0.81542 1.02004 1.00004 1.85943 1.18451 1.27809 1.89911 1.20377 0.93722 0.83269 1.09783 1.20875 0.97861 0.92578 1.05929 1.20980 0.94093 0.96324 1.17682 1.19578 0.89454 0.91878 0.98522 1.18739 0.92653 0.91937 0.98850 1.21465 1.00191 0.91642 0.97631 1.20887 0.93924 0.97662 1.03051 1.21076 0.93808 0.97048 0.97544 1.19811 0.92402 0.94863 1.08198 1.18462 0.87521 0.80360 0.78149 1.90706 1.68801 1.36361 1.47028 1.47586 1.06946 1.32964 1.47082 1.21597 0.79429 1.02942 1.01638 1.22536 0.98732 0.92907 0.94344 1.22247 0.94625 0.98037 0.92984 1.68827 1.34770 0.95262 1.17791 1.18079 0.84969 0.91972 0.92304 1.19491 0.90586 0.92995 1.41030 0.89130 1.26004 0.98606 0.97287 0.93460 1.70075 1.10309 1.24613 1.29179 0.86350 0.78314 0.81974 0.80037 1.18899 1.20246 1.18925 0.94105 0.89783 0.94104 0.87708 0.88128 0.85553 0.85856 0.85870 0.92691 0.91372 0.90702 0.88030 0.92672 0.90422 0.81074 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.83 101.05 0.99 1.51 16 2 O -0.31 -6.64 9.61 -18.29 -0.18 -6.82 16 3 C -0.02 -0.53 6.74 -38.06 -0.26 -0.79 16 4 C -0.15 -3.14 9.11 -39.23 -0.36 -3.49 16 5 C -0.27 -5.62 9.45 -38.86 -0.37 -5.98 16 6 C 0.15 3.32 6.73 -82.91 -0.56 2.76 16 7 C -0.02 -0.42 5.87 -104.95 -0.62 -1.03 16 8 C -0.09 -1.49 9.41 -39.15 -0.37 -1.86 16 9 C -0.14 -2.02 10.02 -39.69 -0.40 -2.42 16 10 C -0.08 -1.22 9.60 -39.12 -0.38 -1.59 16 11 C -0.15 -2.71 5.33 -105.01 -0.56 -3.27 16 12 C 0.57 10.39 7.38 -12.32 -0.09 10.30 16 13 O -0.55 -11.23 16.34 5.33 0.09 -11.14 16 14 N -0.61 -9.79 3.27 -190.64 -0.62 -10.41 16 15 C 0.09 1.12 10.52 59.85 0.63 1.75 16 16 C 0.06 0.87 9.02 59.85 0.54 1.41 16 17 C -0.06 -1.18 6.85 -38.82 -0.27 -1.44 16 18 N -0.45 -11.31 6.90 -7.57 -0.05 -11.36 16 19 C 0.25 6.55 6.56 -84.86 -0.56 5.99 16 20 C -0.41 -10.34 8.94 -37.87 -0.34 -10.68 16 21 H 0.09 2.24 7.31 -52.49 -0.38 1.86 16 22 C 0.07 1.66 5.50 -17.33 -0.10 1.57 16 23 N -0.72 -16.84 11.12 55.55 0.62 -16.23 16 24 Si 0.91 17.62 29.56 -169.99 -5.02 12.59 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 26 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 27 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 28 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.60 7.69 -51.92 -0.40 0.20 16 31 H 0.10 1.89 6.43 -52.49 -0.34 1.55 16 32 H 0.10 1.82 6.18 -52.48 -0.32 1.49 16 33 H 0.13 1.86 6.17 -52.49 -0.32 1.54 16 34 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.12 1.82 7.97 -52.49 -0.42 1.40 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.07 0.99 7.35 -51.93 -0.38 0.61 16 39 H 0.10 1.73 4.15 -51.93 -0.22 1.51 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.25 7.95 -51.93 -0.41 0.83 16 42 H 0.17 3.58 4.97 -52.49 -0.26 3.32 16 43 H 0.27 5.79 8.19 -40.82 -0.33 5.46 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -29.20 357.59 -7.92 -37.13 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.10 Total: 8.13 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.04 Total: -7.28 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.06 Total: -38.00 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.09 Total: -17.96 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.20 -7.92 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239923401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.849 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds