Wall clock time and date at job start Tue Mar 31 2020 14:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35533 * 116.99895 * 2 1 4 4 C 1.39113 * 120.48815 * 359.97438 * 3 2 1 5 5 C 1.38322 * 118.63840 * 179.76614 * 4 3 2 6 6 C 1.40069 * 119.57537 * 0.49873 * 5 4 3 7 7 C 1.48265 * 119.51921 * 179.76548 * 6 5 4 8 8 C 1.39542 * 120.06103 * 4.72738 * 7 6 5 9 9 C 1.38089 * 120.16551 * 179.97438 * 8 7 6 10 10 C 1.38081 * 120.28227 * 359.97438 * 9 8 7 11 11 C 1.39640 * 120.11404 * 359.97438 * 10 9 8 12 12 C 1.47858 * 120.08423 * 180.02562 * 11 10 9 13 13 O 1.21543 * 120.00092 * 33.70702 * 12 11 10 14 14 N 1.34778 * 119.99929 * 213.71056 * 12 11 10 15 15 C 1.46506 * 119.99964 * 185.47811 * 14 12 11 16 16 C 1.46499 * 119.99985 * 5.48019 * 14 12 11 17 17 C 1.39154 * 120.05887 * 184.44639 * 7 6 5 18 18 N 1.32177 * 120.95897 * 359.48452 * 6 5 4 19 19 C 1.33572 * 121.46756 * 0.25970 * 18 6 5 20 20 C 1.40997 * 119.83446 * 180.02562 * 19 18 6 21 21 H 1.08000 * 119.99897 * 179.97438 * 20 19 18 22 22 C 1.40027 * 120.00265 * 0.02562 * 20 19 18 23 23 N 1.30778 * 119.99722 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47323 * 60.00050 * 24 22 20 26 26 H 1.48500 * 109.46952 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47251 * 299.99800 * 24 22 20 28 28 H 1.09003 * 109.47510 * 59.99347 * 1 2 3 29 29 H 1.08994 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47140 * 299.99908 * 1 2 3 31 31 H 1.08001 * 120.67984 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.21778 * 180.24127 * 5 4 3 33 33 H 1.07997 * 119.91648 * 359.97202 * 8 7 6 34 34 H 1.08004 * 119.86161 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.94533 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46929 * 90.00260 * 15 14 12 37 37 H 1.08999 * 109.46770 * 209.99908 * 15 14 12 38 38 H 1.09000 * 109.47019 * 329.99796 * 15 14 12 39 39 H 1.09002 * 109.47071 * 5.31664 * 16 14 12 40 40 H 1.08996 * 109.47199 * 125.31955 * 16 14 12 41 41 H 1.09004 * 109.47315 * 245.31688 * 16 14 12 42 42 H 1.07997 * 120.13519 * 359.97438 * 17 7 6 43 43 H 0.96998 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.2965 2.3807 -0.0005 5 6 1.9639 3.5923 0.0044 6 6 3.3645 3.6101 -0.0008 7 6 4.0785 4.9094 -0.0007 8 6 3.3607 6.1015 0.1040 9 6 4.0237 7.3129 0.1048 10 6 5.4001 7.3534 0.0027 11 6 6.1301 6.1676 -0.1016 12 6 7.6040 6.2118 -0.2104 13 8 8.2301 7.0802 0.3651 14 7 8.2533 5.2892 -0.9478 15 6 9.7180 5.2592 -0.9595 16 6 7.4943 4.3165 -1.7377 17 6 5.4662 4.9422 -0.0992 18 7 4.0588 2.4853 -0.0001 19 6 3.4556 1.2936 0.0002 20 6 4.2301 0.1154 0.0014 21 1 3.7452 -0.8496 0.0022 22 6 5.6281 0.1964 0.0028 23 7 6.2152 1.3650 0.0024 24 14 6.6541 -1.3645 0.0051 25 1 6.3423 -2.1637 -1.2071 26 1 8.0960 -1.0090 0.0056 27 1 6.3400 -2.1616 1.2179 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 0.2171 2.3462 -0.0005 32 1 1.4087 4.5187 0.0081 33 1 2.2841 6.0766 0.1846 34 1 3.4632 8.2325 0.1857 35 1 5.9130 8.3039 0.0043 36 1 10.0744 4.6071 -0.1620 37 1 10.0659 4.8811 -1.9208 38 1 10.1033 6.2669 -0.8044 39 1 6.4315 4.5515 -1.6799 40 1 7.8199 4.3593 -2.7771 41 1 7.6669 3.3148 -1.3440 42 1 6.0262 4.0219 -0.1754 43 1 7.1836 1.4212 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239923401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:27 Heat of formation + Delta-G solvation = -8.522813 kcal Electronic energy + Delta-G solvation = -27557.117972 eV Core-core repulsion = 23760.799580 eV Total energy + Delta-G solvation = -3796.318391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47915 -40.69050 -39.39140 -38.14214 -36.69282 -35.55441 -33.05083 -32.64240 -32.07327 -30.26887 -28.79908 -28.07246 -27.61874 -27.05472 -24.35143 -24.05999 -22.90273 -22.09276 -20.49625 -19.26366 -18.46917 -18.19910 -17.74879 -17.26905 -17.05441 -16.76074 -16.45126 -16.31756 -15.96677 -15.37290 -14.97752 -14.81743 -14.57936 -14.47387 -14.29597 -14.15322 -14.08431 -13.58954 -13.38471 -13.26367 -13.14616 -12.94388 -12.86524 -12.74342 -12.57355 -12.39719 -12.10386 -11.97310 -11.88548 -11.54838 -11.24215 -11.03602 -10.10813 -9.97359 -9.85370 -9.64917 -9.60476 -8.65794 -8.28013 -6.31910 -0.13798 0.20882 0.99033 1.21178 1.43782 1.52728 1.54745 1.76201 2.02224 2.26428 2.73963 2.85210 3.05829 3.47236 3.73584 3.94458 4.01442 4.15649 4.26912 4.27912 4.33994 4.39290 4.42792 4.47929 4.48954 4.55770 4.62067 4.70622 4.74759 4.83135 4.87872 4.90591 4.97125 5.00438 5.12586 5.33028 5.40397 5.42683 5.49467 5.52120 5.68081 5.80404 5.97679 6.14200 6.21707 6.34633 6.42310 6.84501 7.01077 7.16957 8.12458 8.46847 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.005129 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.576611 B = 5457.958731 C = 7911.417559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.044 4.044 4 C -0.147 4.147 5 C -0.264 4.264 6 C 0.125 3.875 7 C -0.050 4.050 8 C -0.082 4.082 9 C -0.120 4.120 10 C -0.073 4.073 11 C -0.162 4.162 12 C 0.558 3.442 13 O -0.578 6.578 14 N -0.611 5.611 15 C 0.082 3.918 16 C 0.064 3.936 17 C -0.071 4.071 18 N -0.474 5.474 19 C 0.219 3.781 20 C -0.448 4.448 21 H 0.081 0.919 22 C 0.034 3.966 23 N -0.739 5.739 24 Si 0.975 3.025 25 H -0.262 1.262 26 H -0.266 1.266 27 H -0.268 1.268 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.152 0.848 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 5.575 -3.747 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.248 6.248 3 C -0.093 4.093 4 C -0.171 4.171 5 C -0.287 4.287 6 C -0.016 4.016 7 C -0.051 4.051 8 C -0.101 4.101 9 C -0.138 4.138 10 C -0.092 4.092 11 C -0.165 4.165 12 C 0.348 3.652 13 O -0.460 6.460 14 N -0.342 5.342 15 C -0.060 4.060 16 C -0.078 4.078 17 C -0.090 4.090 18 N -0.189 5.189 19 C 0.090 3.910 20 C -0.480 4.480 21 H 0.099 0.901 22 C -0.189 4.189 23 N -0.361 5.361 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.190 1.190 27 H -0.193 1.193 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.157 0.843 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.169 0.831 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.337 5.906 -3.478 6.862 hybrid contribution -0.742 -0.921 0.124 1.189 sum -1.079 4.984 -3.354 6.104 Atomic orbital electron populations 1.23111 0.78555 1.04357 1.00995 1.85886 1.21575 1.27321 1.89986 1.20456 0.93559 0.84724 1.10519 1.21257 0.99501 0.91799 1.04577 1.21407 0.93779 0.97756 1.15717 1.20153 0.90709 0.92408 0.98284 1.18823 0.92910 0.92036 1.01352 1.21717 1.01230 0.90926 0.96246 1.21311 0.93356 0.98626 1.00511 1.21404 0.94683 0.96870 0.96212 1.19896 0.92476 0.95146 1.09009 1.18629 0.87813 0.80563 0.78200 1.90677 1.69292 1.37621 1.48391 1.47713 1.08222 1.32099 1.46153 1.21803 0.77610 1.03036 1.03534 1.22441 0.97828 0.91970 0.95593 1.22068 0.94813 0.97946 0.94143 1.68776 1.35951 0.95802 1.18367 1.18491 0.86657 0.92536 0.93280 1.19620 0.91878 0.92764 1.43744 0.90130 1.26684 0.98942 1.00248 0.92977 1.70149 1.10722 1.25988 1.29278 0.85368 0.77143 0.78218 0.79644 1.18672 1.18989 1.19281 0.92913 0.86955 0.93026 0.84385 0.84695 0.83289 0.81399 0.84313 0.92483 0.88281 0.91022 0.89799 0.89918 0.91599 0.83101 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.83 113.37 1.11 1.85 16 2 O -0.33 -14.58 9.61 -88.37 -0.85 -15.43 16 3 C -0.04 -2.11 6.74 23.26 0.16 -1.95 16 4 C -0.15 -6.07 9.11 22.50 0.21 -5.86 16 5 C -0.26 -10.73 9.45 22.73 0.21 -10.52 16 6 C 0.12 5.72 6.73 42.20 0.28 6.00 16 7 C -0.05 -1.99 5.87 -20.08 -0.12 -2.11 16 8 C -0.08 -2.50 9.41 22.55 0.21 -2.29 16 9 C -0.12 -3.10 10.02 22.20 0.22 -2.88 16 10 C -0.07 -2.19 9.60 22.57 0.22 -1.97 16 11 C -0.16 -5.84 5.33 -20.12 -0.11 -5.95 16 12 C 0.56 20.57 7.38 86.79 0.64 21.21 16 13 O -0.58 -23.60 16.34 -3.85 -0.06 -23.67 16 14 N -0.61 -19.45 3.27 -875.33 -2.87 -22.32 16 15 C 0.08 2.05 10.52 127.77 1.34 3.40 16 16 C 0.06 1.97 9.02 127.77 1.15 3.12 16 17 C -0.07 -2.82 6.85 22.76 0.16 -2.67 16 18 N -0.47 -24.71 6.90 -177.85 -1.23 -25.93 16 19 C 0.22 11.75 6.56 40.33 0.26 12.01 16 20 C -0.45 -23.89 8.94 23.38 0.21 -23.68 16 21 H 0.08 4.25 7.31 -2.91 -0.02 4.23 16 22 C 0.03 1.65 5.50 85.28 0.47 2.12 16 23 N -0.74 -36.19 11.12 21.84 0.24 -35.95 16 24 Si 0.97 37.30 29.56 68.60 2.03 39.33 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 28 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 29 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.05 1.41 7.69 -2.38 -0.02 1.39 16 31 H 0.14 4.60 6.43 -2.91 -0.02 4.59 16 32 H 0.14 4.42 6.18 -2.91 -0.02 4.40 16 33 H 0.15 3.78 6.17 -2.91 -0.02 3.76 16 34 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.14 3.75 7.97 -2.91 -0.02 3.72 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.07 1.86 7.35 -2.39 -0.02 1.84 16 39 H 0.08 2.95 4.15 -2.39 -0.01 2.94 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.20 7.95 -2.38 -0.02 2.18 16 42 H 0.15 6.63 4.97 -2.91 -0.01 6.62 16 43 H 0.28 12.30 8.19 -92.71 -0.76 11.54 16 Total: -1.00 -67.27 357.59 4.97 -62.31 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 1.06 Total: 31.83 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 6.64 Total: -10.17 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.85 Total: -84.20 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.91 Total: -39.10 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -67.27 4.97 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239923401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.785 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds