Wall clock time and date at job start Tue Mar 31 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34837 * 117.00116 * 2 1 4 4 O 1.21558 * 120.00135 * 359.97438 * 3 2 1 5 5 C 1.47092 * 119.99966 * 179.97438 * 3 2 1 6 6 C 1.39549 * 120.44795 * 354.33374 * 5 3 2 7 7 C 1.37774 * 120.18589 * 180.02562 * 6 5 3 8 8 C 1.39742 * 121.16399 * 0.02562 * 7 6 5 9 9 C 1.48302 * 119.54667 * 180.02562 * 8 7 6 10 10 C 1.40930 * 126.24630 * 179.68823 * 9 8 7 11 11 N 1.30637 * 108.07834 * 179.88011 * 10 9 8 12 12 N 1.39998 * 108.55473 * 0.38404 * 11 10 9 13 13 C 1.46506 * 125.87335 * 179.73491 * 12 11 10 14 14 C 1.53007 * 109.46782 * 305.02406 * 13 12 11 15 15 C 1.53000 * 117.49523 * 243.61893 * 14 13 12 16 16 C 1.52992 * 59.99920 * 252.51314 * 15 14 13 17 17 C 1.34719 * 108.25529 * 359.75216 * 12 11 10 18 18 C 1.38753 * 120.90806 * 359.74363 * 8 7 6 19 19 C 1.40519 * 119.73221 * 0.48781 * 18 8 7 20 20 C 1.40930 * 120.54661 * 179.79389 * 19 18 8 21 21 H 1.07993 * 119.99838 * 146.56920 * 20 19 18 22 22 C 1.40269 * 119.99937 * 326.84658 * 20 19 18 23 23 N 1.30627 * 119.99915 * 167.35518 * 22 20 19 24 24 Si 1.86802 * 120.00027 * 347.35272 * 22 20 19 25 25 H 1.48495 * 109.47218 * 92.54229 * 24 22 20 26 26 H 1.48504 * 109.47385 * 212.54647 * 24 22 20 27 27 H 1.48506 * 109.47102 * 332.54429 * 24 22 20 28 28 H 1.09002 * 109.47049 * 300.00841 * 1 2 3 29 29 H 1.09002 * 109.47257 * 60.00175 * 1 2 3 30 30 H 1.08992 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.90910 * 0.02870 * 6 5 3 32 32 H 1.07996 * 119.42173 * 180.02562 * 7 6 5 33 33 H 1.08003 * 125.96002 * 0.04013 * 10 9 8 34 34 H 1.08996 * 109.47243 * 65.02280 * 13 12 11 35 35 H 1.08999 * 109.47343 * 185.02421 * 13 12 11 36 36 H 1.08996 * 115.55088 * 29.32975 * 14 13 12 37 37 H 1.08998 * 117.50195 * 0.02562 * 15 14 13 38 38 H 1.09004 * 117.49479 * 145.02107 * 15 14 13 39 39 H 1.09004 * 117.49905 * 252.50839 * 16 15 14 40 40 H 1.09001 * 117.51704 * 107.48527 * 16 15 14 41 41 H 1.08000 * 126.20154 * 180.02562 * 17 12 11 42 42 H 1.07997 * 120.13188 * 180.26452 * 18 8 7 43 43 H 0.97004 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2209 -0.0005 5 6 3.5330 1.2783 0.0006 6 6 4.3018 0.1198 0.1199 7 6 5.6773 0.1982 0.1203 8 6 6.3316 1.4274 0.0030 9 6 7.8140 1.4701 0.0070 10 6 8.6147 2.6241 -0.1083 11 7 9.8670 2.2551 -0.0602 12 7 9.9162 0.8628 0.0775 13 6 11.1328 0.0511 0.1634 14 6 12.0230 0.3368 -1.0477 15 6 12.2896 -0.8171 -2.0164 16 6 13.4003 -0.3283 -1.0847 17 6 8.6524 0.3977 0.1171 18 6 5.6135 2.6079 -0.1230 19 6 4.2087 2.5725 -0.1229 20 6 3.4622 3.7616 -0.2455 21 1 2.5155 3.7536 -0.7649 22 6 3.9517 4.9565 0.3022 23 7 3.3975 6.0959 -0.0157 24 14 5.3961 4.9186 1.4862 25 1 6.6610 5.1008 0.7299 26 1 5.2511 6.0132 2.4793 27 1 5.4244 3.6117 2.1908 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.8172 -0.8409 0.2121 32 1 6.2602 -0.7062 0.2130 33 1 8.2556 3.6371 -0.2149 34 1 11.6719 0.3000 1.0774 35 1 10.8646 -1.0053 0.1760 36 1 11.9363 1.3383 -1.4691 37 1 11.8305 -1.7796 -1.7911 38 1 12.3782 -0.5748 -3.0755 39 1 14.2197 0.2354 -1.5307 40 1 13.6724 -0.9691 -0.2459 41 1 8.3560 -0.6359 0.2181 42 1 6.1321 3.5505 -0.2171 43 1 3.7363 6.9223 0.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240517005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:53 Heat of formation + Delta-G solvation = 37.134760 kcal Electronic energy + Delta-G solvation = -26472.543303 eV Core-core repulsion = 22678.204773 eV Total energy + Delta-G solvation = -3794.338530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99459 -39.24888 -37.87148 -37.24330 -35.26765 -33.83833 -32.89553 -31.33320 -30.56610 -28.87266 -27.41885 -26.28733 -25.40099 -22.82379 -22.72539 -21.96699 -21.26422 -20.64771 -19.79924 -19.13284 -17.55810 -17.12356 -16.82160 -15.90303 -15.73093 -15.39102 -15.22216 -14.97822 -14.60861 -14.03703 -13.80326 -13.69297 -13.55392 -13.14605 -12.97698 -12.55412 -12.52313 -12.32288 -12.00852 -11.90606 -11.88129 -11.59491 -11.37168 -11.17787 -10.89562 -10.80902 -10.68246 -10.38524 -10.28711 -10.24487 -9.95481 -9.78469 -9.33205 -9.23585 -8.96039 -8.80416 -7.72099 -7.10632 -7.04235 -4.61203 1.59628 2.20125 2.54765 2.63342 2.99459 3.09807 3.15455 3.29787 3.44648 3.71926 3.88145 3.99082 4.15931 4.49441 4.52837 4.59654 4.75512 4.97633 5.02421 5.20035 5.27738 5.30070 5.34674 5.52970 5.59996 5.65966 5.68478 5.74133 5.79944 5.83830 5.93483 6.00860 6.06151 6.13509 6.34240 6.51011 6.71060 6.82867 7.06346 7.10734 7.16241 7.35770 7.41657 7.63557 7.70757 7.89952 7.97127 8.29900 8.52051 8.69232 9.06017 9.89778 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.003411 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.737586 B = 8206.439218 C = 9889.772574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.375 6.375 3 C 0.501 3.499 4 O -0.511 6.511 5 C -0.255 4.255 6 C -0.009 4.009 7 C -0.258 4.258 8 C 0.060 3.940 9 C -0.182 4.182 10 C 0.061 3.939 11 N -0.301 5.301 12 N -0.374 5.374 13 C 0.169 3.831 14 C -0.168 4.168 15 C -0.178 4.178 16 C -0.172 4.172 17 C 0.062 3.938 18 C -0.227 4.227 19 C 0.125 3.875 20 C -0.386 4.386 21 H 0.119 0.881 22 C 0.079 3.921 23 N -0.780 5.780 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.288 1.288 27 H -0.238 1.238 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.183 0.817 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.175 0.825 42 H 0.108 0.892 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.664 -12.004 0.390 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.351 3.649 4 O -0.401 6.401 5 C -0.257 4.257 6 C -0.027 4.027 7 C -0.277 4.277 8 C 0.058 3.942 9 C -0.193 4.193 10 C -0.125 4.125 11 N -0.121 5.121 12 N -0.155 5.155 13 C 0.048 3.952 14 C -0.187 4.187 15 C -0.215 4.215 16 C -0.209 4.209 17 C -0.084 4.084 18 C -0.246 4.246 19 C 0.121 3.879 20 C -0.412 4.412 21 H 0.136 0.864 22 C -0.144 4.144 23 N -0.403 5.403 24 Si 0.735 3.265 25 H -0.190 1.190 26 H -0.215 1.215 27 H -0.161 1.161 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.200 0.800 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.192 0.808 42 H 0.126 0.874 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.711 -11.111 0.368 17.651 hybrid contribution -0.529 -0.054 0.449 0.696 sum 13.182 -11.164 0.818 17.294 Atomic orbital electron populations 1.22973 0.78557 1.01999 1.01847 1.86574 1.21560 1.35030 1.86215 1.21245 0.89516 0.80336 0.73822 1.90796 1.66789 1.35131 1.47431 1.19596 0.86905 0.94521 1.24726 1.20795 0.93323 0.96213 0.92402 1.20074 0.93635 0.95315 1.18710 1.17775 0.87966 0.93692 0.94769 1.19263 0.94160 0.91732 1.14173 1.24100 0.89684 1.00053 0.98697 1.77126 1.20723 0.89516 1.24753 1.48330 1.05025 1.05187 1.57007 1.21186 0.82634 0.93458 0.97970 1.22595 0.97821 0.99325 0.98913 1.23093 1.02905 0.98264 0.97199 1.22963 0.91851 1.03619 1.02515 1.22525 0.83823 0.99889 1.02127 1.20948 0.93393 0.96184 1.14119 1.18346 0.90615 0.91302 0.87669 1.20129 1.06458 0.89334 1.25266 0.86365 1.26439 0.97182 0.94446 0.96315 1.69565 1.37020 0.99363 1.34305 0.86363 0.79991 0.79928 0.80214 1.19011 1.21487 1.16081 0.92762 0.92740 0.89440 0.87370 0.88527 0.80040 0.89583 0.88709 0.86391 0.88536 0.88593 0.88427 0.88511 0.80810 0.87435 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.57 101.05 1.07 1.70 16 2 O -0.37 -7.47 9.84 -40.87 -0.40 -7.87 16 3 C 0.50 11.88 7.86 34.32 0.27 12.15 16 4 O -0.51 -13.53 13.56 -19.31 -0.26 -13.79 16 5 C -0.25 -6.08 6.07 -102.48 -0.62 -6.71 16 6 C -0.01 -0.18 9.60 -39.26 -0.38 -0.56 16 7 C -0.26 -5.00 9.50 -39.19 -0.37 -5.37 16 8 C 0.06 1.23 5.86 -105.01 -0.62 0.62 16 9 C -0.18 -3.29 6.03 -105.34 -0.64 -3.93 16 10 C 0.06 1.09 11.39 -17.04 -0.19 0.90 16 11 N -0.30 -5.02 12.18 30.82 0.38 -4.64 16 12 N -0.37 -5.21 3.67 -61.09 -0.22 -5.43 16 13 C 0.17 1.61 6.78 -4.04 -0.03 1.59 16 14 C -0.17 -1.56 5.93 -90.62 -0.54 -2.10 16 15 C -0.18 -1.36 10.18 -26.74 -0.27 -1.63 16 16 C -0.17 -1.19 10.25 -26.74 -0.27 -1.47 16 17 C 0.06 0.91 10.80 -16.89 -0.18 0.72 16 18 C -0.23 -5.25 6.58 -38.53 -0.25 -5.50 16 19 C 0.13 3.17 5.24 -104.68 -0.55 2.63 16 20 C -0.39 -10.56 8.37 -37.80 -0.32 -10.88 16 21 H 0.12 3.56 6.19 -52.49 -0.32 3.24 16 22 C 0.08 2.04 5.47 -17.30 -0.09 1.94 16 23 N -0.78 -20.46 13.92 55.56 0.77 -19.69 16 24 Si 0.91 20.26 24.48 -169.99 -4.16 16.10 16 25 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 26 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.24 -5.50 6.77 56.52 0.38 -5.12 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 1.96 7.63 -52.49 -0.40 1.56 16 32 H 0.10 1.55 6.90 -52.49 -0.36 1.19 16 33 H 0.18 3.15 7.15 -52.48 -0.38 2.77 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.66 7.80 -51.93 -0.41 0.26 16 36 H 0.12 1.38 7.90 -51.93 -0.41 0.97 16 37 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.17 1.98 7.22 -52.49 -0.38 1.60 16 42 H 0.11 2.43 3.65 -52.49 -0.19 2.24 16 43 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -31.01 362.27 -7.83 -38.84 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.41 Total: 6.91 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.98 Total: -15.89 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.92 Total: -29.76 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.66 Total: -21.66 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.16 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.01 -7.83 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240517005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.977 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds