Wall clock time and date at job start Tue Mar 31 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34837 * 117.00116 * 2 1 4 4 O 1.21558 * 120.00135 * 359.97438 * 3 2 1 5 5 C 1.47092 * 119.99966 * 179.97438 * 3 2 1 6 6 C 1.39549 * 120.44795 * 354.33374 * 5 3 2 7 7 C 1.37774 * 120.18589 * 180.02562 * 6 5 3 8 8 C 1.39742 * 121.16399 * 0.02562 * 7 6 5 9 9 C 1.48302 * 119.54667 * 180.02562 * 8 7 6 10 10 C 1.40930 * 126.24630 * 179.68823 * 9 8 7 11 11 N 1.30637 * 108.07834 * 179.88011 * 10 9 8 12 12 N 1.39998 * 108.55473 * 0.38404 * 11 10 9 13 13 C 1.46506 * 125.87335 * 179.73491 * 12 11 10 14 14 C 1.53007 * 109.46782 * 305.02406 * 13 12 11 15 15 C 1.53000 * 117.49523 * 243.61893 * 14 13 12 16 16 C 1.52992 * 59.99920 * 252.51314 * 15 14 13 17 17 C 1.34719 * 108.25529 * 359.75216 * 12 11 10 18 18 C 1.38753 * 120.90806 * 359.74363 * 8 7 6 19 19 C 1.40519 * 119.73221 * 0.48781 * 18 8 7 20 20 C 1.40930 * 120.54661 * 179.79389 * 19 18 8 21 21 H 1.07993 * 119.99838 * 146.56920 * 20 19 18 22 22 C 1.40269 * 119.99937 * 326.84658 * 20 19 18 23 23 N 1.30627 * 119.99915 * 167.35518 * 22 20 19 24 24 Si 1.86802 * 120.00027 * 347.35272 * 22 20 19 25 25 H 1.48495 * 109.47218 * 92.54229 * 24 22 20 26 26 H 1.48504 * 109.47385 * 212.54647 * 24 22 20 27 27 H 1.48506 * 109.47102 * 332.54429 * 24 22 20 28 28 H 1.09002 * 109.47049 * 300.00841 * 1 2 3 29 29 H 1.09002 * 109.47257 * 60.00175 * 1 2 3 30 30 H 1.08992 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.90910 * 0.02870 * 6 5 3 32 32 H 1.07996 * 119.42173 * 180.02562 * 7 6 5 33 33 H 1.08003 * 125.96002 * 0.04013 * 10 9 8 34 34 H 1.08996 * 109.47243 * 65.02280 * 13 12 11 35 35 H 1.08999 * 109.47343 * 185.02421 * 13 12 11 36 36 H 1.08996 * 115.55088 * 29.32975 * 14 13 12 37 37 H 1.08998 * 117.50195 * 0.02562 * 15 14 13 38 38 H 1.09004 * 117.49479 * 145.02107 * 15 14 13 39 39 H 1.09004 * 117.49905 * 252.50839 * 16 15 14 40 40 H 1.09001 * 117.51704 * 107.48527 * 16 15 14 41 41 H 1.08000 * 126.20154 * 180.02562 * 17 12 11 42 42 H 1.07997 * 120.13188 * 180.26452 * 18 8 7 43 43 H 0.97004 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2209 -0.0005 5 6 3.5330 1.2783 0.0006 6 6 4.3018 0.1198 0.1199 7 6 5.6773 0.1982 0.1203 8 6 6.3316 1.4274 0.0030 9 6 7.8140 1.4701 0.0070 10 6 8.6147 2.6241 -0.1083 11 7 9.8670 2.2551 -0.0602 12 7 9.9162 0.8628 0.0775 13 6 11.1328 0.0511 0.1634 14 6 12.0230 0.3368 -1.0477 15 6 12.2896 -0.8171 -2.0164 16 6 13.4003 -0.3283 -1.0847 17 6 8.6524 0.3977 0.1171 18 6 5.6135 2.6079 -0.1230 19 6 4.2087 2.5725 -0.1229 20 6 3.4622 3.7616 -0.2455 21 1 2.5155 3.7536 -0.7649 22 6 3.9517 4.9565 0.3022 23 7 3.3975 6.0959 -0.0157 24 14 5.3961 4.9186 1.4862 25 1 6.6610 5.1008 0.7299 26 1 5.2511 6.0132 2.4793 27 1 5.4244 3.6117 2.1908 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.8172 -0.8409 0.2121 32 1 6.2602 -0.7062 0.2130 33 1 8.2556 3.6371 -0.2149 34 1 11.6719 0.3000 1.0774 35 1 10.8646 -1.0053 0.1760 36 1 11.9363 1.3383 -1.4691 37 1 11.8305 -1.7796 -1.7911 38 1 12.3782 -0.5748 -3.0755 39 1 14.2197 0.2354 -1.5307 40 1 13.6724 -0.9691 -0.2459 41 1 8.3560 -0.6359 0.2181 42 1 6.1321 3.5505 -0.2171 43 1 3.7363 6.9223 0.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240517005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:52 Heat of formation + Delta-G solvation = 19.426317 kcal Electronic energy + Delta-G solvation = -26473.311199 eV Core-core repulsion = 22678.204773 eV Total energy + Delta-G solvation = -3795.106426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20261 -41.00580 -39.08015 -38.36952 -37.03278 -35.66537 -34.05535 -32.83701 -32.29501 -30.18742 -28.75614 -27.45468 -27.14316 -24.38476 -23.44190 -23.24729 -22.36445 -22.12716 -21.00026 -20.60345 -19.26224 -18.59890 -18.29566 -17.54404 -17.04859 -16.88057 -16.54652 -16.06271 -15.81800 -15.48397 -15.29412 -14.95288 -14.77505 -14.63072 -14.26867 -14.15041 -13.94371 -13.71567 -13.60010 -13.17484 -12.95908 -12.84495 -12.69278 -12.54636 -12.42592 -12.34591 -12.04124 -11.70019 -11.56609 -11.51816 -11.38606 -11.09288 -11.00791 -10.79207 -10.42850 -10.27542 -9.49748 -8.95662 -8.58662 -6.56541 -0.01841 0.88616 0.94243 1.22994 1.34401 1.44060 1.55992 1.60644 2.06468 2.13253 2.30187 2.70587 2.85692 3.37419 3.54102 3.82332 3.91318 3.96787 4.03777 4.20149 4.21692 4.32920 4.38057 4.39532 4.44284 4.45047 4.56140 4.67469 4.69030 4.78468 4.79111 4.80370 4.83763 5.00607 5.06170 5.21907 5.24392 5.28738 5.40454 5.49181 5.65621 5.72726 5.85775 6.00372 6.12390 6.22742 6.37340 6.67555 6.68682 6.71307 7.26721 8.09284 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.003411 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.737586 B = 8206.439218 C = 9889.772574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.499 3.501 4 O -0.551 6.551 5 C -0.281 4.281 6 C -0.006 4.006 7 C -0.236 4.236 8 C 0.073 3.927 9 C -0.225 4.225 10 C 0.046 3.954 11 N -0.319 5.319 12 N -0.362 5.362 13 C 0.160 3.840 14 C -0.188 4.188 15 C -0.175 4.175 16 C -0.156 4.156 17 C 0.096 3.904 18 C -0.252 4.252 19 C 0.116 3.884 20 C -0.436 4.436 21 H 0.071 0.929 22 C 0.045 3.955 23 N -0.831 5.831 24 Si 0.962 3.038 25 H -0.243 1.243 26 H -0.278 1.278 27 H -0.251 1.251 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.173 0.827 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.221 0.779 42 H 0.104 0.896 43 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.076 -17.152 1.469 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.286 6.286 3 C 0.350 3.650 4 O -0.445 6.445 5 C -0.284 4.284 6 C -0.024 4.024 7 C -0.254 4.254 8 C 0.071 3.929 9 C -0.237 4.237 10 C -0.140 4.140 11 N -0.140 5.140 12 N -0.142 5.142 13 C 0.041 3.959 14 C -0.207 4.207 15 C -0.212 4.212 16 C -0.193 4.193 17 C -0.052 4.052 18 C -0.271 4.271 19 C 0.113 3.887 20 C -0.463 4.463 21 H 0.089 0.911 22 C -0.172 4.172 23 N -0.456 5.456 24 Si 0.784 3.216 25 H -0.168 1.168 26 H -0.205 1.205 27 H -0.174 1.174 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.190 0.810 34 H 0.116 0.884 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.237 0.763 42 H 0.121 0.879 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.157 -16.276 1.433 23.692 hybrid contribution -1.426 1.121 0.057 1.815 sum 15.731 -15.155 1.490 21.894 Atomic orbital electron populations 1.23383 0.75971 1.05182 1.01534 1.86525 1.24006 1.32599 1.85456 1.21426 0.89874 0.80786 0.72899 1.90793 1.67709 1.36800 1.49149 1.19979 0.87635 0.95369 1.25430 1.21159 0.93911 0.96198 0.91117 1.20674 0.93455 0.96548 1.14771 1.18096 0.89722 0.93196 0.91902 1.19178 0.92959 0.93216 1.18301 1.24081 0.90336 1.00179 0.99419 1.77110 1.20062 0.91569 1.25242 1.48758 1.06443 1.04468 1.54562 1.21674 0.81121 0.94688 0.98427 1.22439 1.00062 0.98468 0.99760 1.23195 1.03025 0.98147 0.96784 1.23065 0.90785 1.02768 1.02730 1.23089 0.83203 1.00788 0.98154 1.20970 0.92488 0.97561 1.16126 1.18580 0.91812 0.91346 0.86989 1.19893 1.05810 0.91571 1.29053 0.91105 1.27055 0.99249 0.93732 0.97177 1.69599 1.39325 1.00010 1.36679 0.85586 0.78232 0.79236 0.78564 1.16751 1.20465 1.17420 0.93075 0.93269 0.84356 0.84087 0.83364 0.81043 0.88432 0.84850 0.89602 0.86711 0.89247 0.88418 0.86397 0.76298 0.87856 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.57 113.37 1.20 2.18 16 2 O -0.37 -14.29 9.84 -57.50 -0.57 -14.85 16 3 C 0.50 24.34 7.86 70.15 0.55 24.89 16 4 O -0.55 -31.19 13.56 19.65 0.27 -30.92 16 5 C -0.28 -13.56 6.07 -18.48 -0.11 -13.67 16 6 C -0.01 -0.22 9.60 22.48 0.22 0.00 16 7 C -0.24 -8.02 9.50 22.52 0.21 -7.81 16 8 C 0.07 2.82 5.86 -20.11 -0.12 2.71 16 9 C -0.23 -7.45 6.03 -20.33 -0.12 -7.57 16 10 C 0.05 1.58 11.39 85.53 0.97 2.55 16 11 N -0.32 -10.02 12.18 -56.42 -0.69 -10.71 16 12 N -0.36 -8.54 3.67 -347.18 -1.27 -9.81 16 13 C 0.16 2.25 6.78 86.38 0.59 2.84 16 14 C -0.19 -2.89 5.93 -10.79 -0.06 -2.96 16 15 C -0.17 -2.00 10.18 30.59 0.31 -1.69 16 16 C -0.16 -1.57 10.25 30.59 0.31 -1.26 16 17 C 0.10 2.27 10.80 83.86 0.91 3.18 16 18 C -0.25 -11.79 6.58 22.95 0.15 -11.64 16 19 C 0.12 6.17 5.24 -19.90 -0.10 6.06 16 20 C -0.44 -25.94 8.37 23.42 0.20 -25.74 16 21 H 0.07 4.76 6.19 -2.91 -0.02 4.75 16 22 C 0.04 2.49 5.47 85.37 0.47 2.96 16 23 N -0.83 -47.30 13.92 21.88 0.30 -47.00 16 24 Si 0.96 43.84 24.48 68.60 1.68 45.52 16 25 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.25 -11.74 6.77 99.48 0.67 -11.06 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.14 4.43 7.63 -2.91 -0.02 4.41 16 32 H 0.15 3.56 6.90 -2.91 -0.02 3.54 16 33 H 0.17 6.06 7.15 -2.91 -0.02 6.04 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.13 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.09 1.90 7.90 -2.39 -0.02 1.89 16 37 H 0.11 0.91 8.03 -2.39 -0.02 0.89 16 38 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.22 3.09 7.22 -2.91 -0.02 3.07 16 42 H 0.10 4.83 3.65 -2.91 -0.01 4.82 16 43 H 0.30 15.08 8.29 -92.71 -0.77 14.31 16 Total: -1.00 -76.40 362.27 6.24 -70.16 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.96 Total: 22.59 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 5.56 Total: -24.97 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -1.66 Total: -67.52 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.30 Total: -45.77 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.68 Total: 45.52 kcal Total: -76.40 6.24 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240517005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.582 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds