Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35536 * 117.00027 * 2 1 4 4 C 1.39145 * 120.47620 * 359.97438 * 3 2 1 5 5 C 1.38291 * 118.64714 * 180.02562 * 4 3 2 6 6 C 1.40155 * 119.56831 * 359.97438 * 5 4 3 7 7 C 1.48136 * 119.51997 * 180.29998 * 6 5 4 8 8 C 1.39514 * 120.12360 * 359.79157 * 7 6 5 9 9 C 1.37704 * 119.98536 * 180.02562 * 8 7 6 10 10 C 1.39373 * 120.42498 * 0.02562 * 9 8 7 11 11 C 1.39193 * 119.72239 * 359.78755 * 10 9 8 12 12 C 1.38475 * 120.00329 * 0.04525 * 11 10 9 13 13 O 1.36164 * 121.35974 * 180.57461 * 11 10 9 14 14 C 1.43136 * 116.66576 * 344.79840 * 13 11 10 15 15 C 1.53422 * 107.87965 * 45.35435 * 14 13 11 16 16 N 1.39604 * 118.46159 * 179.47651 * 10 9 8 17 17 C 1.46905 * 110.99883 * 35.15704 * 16 10 9 18 18 N 1.32225 * 120.95422 * 0.02562 * 6 5 4 19 19 C 1.33597 * 121.45159 * 0.02562 * 18 6 5 20 20 C 1.40969 * 119.83256 * 180.02562 * 19 18 6 21 21 H 1.08000 * 120.00040 * 187.40338 * 20 19 18 22 22 C 1.39998 * 120.00219 * 7.40097 * 20 19 18 23 23 N 1.30789 * 119.99771 * 7.34054 * 22 20 19 24 24 Si 1.86805 * 120.00410 * 187.33712 * 22 20 19 25 25 H 1.48503 * 109.46770 * 84.98830 * 24 22 20 26 26 H 1.48497 * 109.47351 * 204.98654 * 24 22 20 27 27 H 1.48503 * 109.46646 * 324.99061 * 24 22 20 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47209 * 300.00101 * 1 2 3 30 30 H 1.09001 * 109.47601 * 59.99960 * 1 2 3 31 31 H 1.07996 * 120.67392 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.21303 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.00563 * 0.05146 * 8 7 6 34 34 H 1.07999 * 119.79312 * 180.02562 * 9 8 7 35 35 H 1.07991 * 119.94097 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.77605 * 164.94660 * 14 13 11 37 37 H 1.08999 * 109.77796 * 285.75769 * 14 13 11 38 38 H 1.09001 * 109.61088 * 56.51152 * 15 14 13 39 39 H 1.08996 * 109.61511 * 176.85642 * 15 14 13 40 40 H 1.08995 * 109.47162 * 56.04227 * 17 16 10 41 41 H 1.08992 * 109.46953 * 176.04742 * 17 16 10 42 42 H 1.09001 * 109.46831 * 296.04403 * 17 16 10 43 43 H 0.97006 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2961 2.3809 -0.0005 5 6 1.9630 3.5924 -0.0011 6 6 3.3644 3.6105 -0.0005 7 6 4.0776 4.9088 0.0057 8 6 3.3571 6.1035 0.0065 9 6 4.0230 7.3088 0.0117 10 6 5.4162 7.3454 0.0157 11 6 6.1379 6.1551 0.0188 12 6 5.4714 4.9413 0.0171 13 8 7.4994 6.1520 0.0344 14 6 8.1484 7.3863 -0.2883 15 6 7.4366 8.5076 0.4798 16 7 6.0491 8.5897 0.0097 17 6 5.2859 9.5723 0.7910 18 7 4.0591 2.4854 0.0000 19 6 3.4556 1.2935 -0.0005 20 6 4.2298 0.1154 0.0007 21 1 3.7514 -0.8452 -0.1203 22 6 5.6188 0.1908 0.1585 23 7 6.1830 1.3347 0.4477 24 14 6.6665 -1.3426 -0.0440 25 1 6.9831 -1.5393 -1.4815 26 1 7.9278 -1.1852 0.7236 27 1 5.9211 -2.5219 0.4647 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2167 2.3460 -0.0005 32 1 1.4075 4.5185 -0.0011 33 1 2.2773 6.0829 0.0035 34 1 3.4621 8.2317 0.0128 35 1 6.0323 4.0185 0.0199 36 1 9.1956 7.3415 0.0107 37 1 8.0777 7.5709 -1.3602 38 1 7.4489 8.2850 1.5468 39 1 7.9440 9.4549 0.2978 40 1 5.1394 9.1965 1.8036 41 1 5.8356 10.5127 0.8283 42 1 4.3165 9.7365 0.3205 43 1 7.1455 1.3870 0.5567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243940979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = 4.905819 kcal Electronic energy + Delta-G solvation = -27284.663809 eV Core-core repulsion = 23488.927726 eV Total energy + Delta-G solvation = -3795.736082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71480 -38.96875 -37.44091 -36.71057 -36.00204 -33.64721 -31.18453 -30.60530 -30.02307 -29.35637 -28.25177 -26.57338 -25.91667 -24.59807 -23.96104 -22.00558 -21.30843 -20.87615 -19.52694 -17.87538 -17.30525 -16.83167 -16.58243 -16.23126 -15.64101 -14.98364 -14.75878 -14.66205 -14.56440 -14.47839 -14.17666 -13.63769 -13.29804 -13.27822 -13.00635 -12.77221 -12.45790 -12.42080 -12.03621 -11.99320 -11.67509 -11.40281 -11.28576 -11.20330 -11.03700 -10.79247 -10.60844 -10.49872 -10.39520 -10.28471 -9.81913 -9.64745 -9.26602 -8.20820 -8.03560 -7.74310 -7.57239 -6.72372 -6.46691 -4.38013 1.50107 1.95564 2.76846 2.94758 3.13321 3.16853 3.20948 3.53515 3.74791 3.99123 4.32801 4.40894 4.58838 4.83804 4.84950 5.00190 5.04162 5.26433 5.35078 5.42490 5.42846 5.53350 5.65287 5.69254 5.71264 5.72315 5.79735 5.88890 5.93194 6.00787 6.05257 6.25980 6.38149 6.43324 6.61311 6.72635 6.83378 6.97495 7.07274 7.18093 7.25024 7.37533 7.44869 7.57282 7.87373 7.88867 8.20137 8.31253 8.71437 8.99337 9.98977 10.30940 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.004052 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.575713 B = 6908.907178 C = 9005.900939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.028 4.028 4 C -0.147 4.147 5 C -0.269 4.269 6 C 0.153 3.847 7 C -0.002 4.002 8 C -0.118 4.118 9 C -0.133 4.133 10 C 0.025 3.975 11 C 0.078 3.922 12 C -0.084 4.084 13 O -0.312 6.312 14 C 0.059 3.941 15 C 0.014 3.986 16 N -0.491 5.491 17 C 0.027 3.973 18 N -0.453 5.453 19 C 0.256 3.744 20 C -0.415 4.415 21 H 0.091 0.909 22 C 0.071 3.929 23 N -0.718 5.718 24 Si 0.909 3.091 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.262 1.262 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.162 0.838 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 11.795 0.513 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.077 4.077 4 C -0.171 4.171 5 C -0.293 4.293 6 C 0.011 3.989 7 C -0.004 4.004 8 C -0.137 4.137 9 C -0.153 4.153 10 C -0.072 4.072 11 C 0.032 3.968 12 C -0.104 4.104 13 O -0.226 6.226 14 C -0.017 4.017 15 C -0.113 4.113 16 N -0.208 5.208 17 C -0.119 4.119 18 N -0.167 5.167 19 C 0.129 3.871 20 C -0.446 4.446 21 H 0.109 0.891 22 C -0.154 4.154 23 N -0.340 5.340 24 Si 0.733 3.267 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.186 1.186 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.465 11.766 0.156 11.858 hybrid contribution -0.899 -0.289 0.560 1.098 sum 0.566 11.477 0.716 11.514 Atomic orbital electron populations 1.22758 0.81703 1.01892 0.99944 1.85941 1.18312 1.27849 1.90011 1.20362 0.93692 0.83223 1.10388 1.20863 0.97751 0.92604 1.05882 1.20968 0.94059 0.96255 1.18002 1.19542 0.89384 0.91794 0.98161 1.18476 0.91719 0.91775 0.98426 1.21009 0.99854 0.91090 1.01769 1.20609 0.91400 0.98085 1.05229 1.18810 0.93403 0.87851 1.07161 1.18640 0.81855 0.92782 1.03557 1.21005 0.93873 0.96597 0.98893 1.86295 1.16467 1.33886 1.85965 1.23047 0.96649 0.82205 0.99801 1.22768 0.89169 1.00822 0.98518 1.58800 1.02563 1.06920 1.52484 1.22485 0.98968 0.94637 0.95827 1.68818 1.35023 0.95380 1.17497 1.18079 0.84997 0.91983 0.92076 1.19488 0.91216 0.93202 1.40730 0.89106 1.26019 0.98700 0.97187 0.93539 1.70019 1.11611 1.25101 1.27219 0.86313 0.79056 0.82017 0.79290 1.19287 1.20229 1.18601 0.89868 0.94168 0.94176 0.87792 0.88130 0.85622 0.85932 0.82011 0.87286 0.91096 0.92775 0.88771 0.94352 0.91069 0.90336 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.01 9.62 -18.30 -0.18 -7.19 16 3 C -0.03 -0.70 6.74 -38.04 -0.26 -0.95 16 4 C -0.15 -3.30 9.11 -39.23 -0.36 -3.66 16 5 C -0.27 -6.05 9.46 -38.84 -0.37 -6.42 16 6 C 0.15 3.74 6.74 -82.92 -0.56 3.19 16 7 C 0.00 -0.05 5.88 -104.92 -0.62 -0.66 16 8 C -0.12 -2.12 9.40 -39.30 -0.37 -2.49 16 9 C -0.13 -2.13 9.05 -39.35 -0.36 -2.48 16 10 C 0.03 0.42 5.82 -83.54 -0.49 -0.07 16 11 C 0.08 1.50 6.47 -39.14 -0.25 1.25 16 12 C -0.08 -1.85 9.46 -39.05 -0.37 -2.22 16 13 O -0.31 -5.56 10.40 -20.26 -0.21 -5.77 16 14 C 0.06 0.74 7.26 37.38 0.27 1.01 16 15 C 0.01 0.16 5.69 -3.70 -0.02 0.14 16 16 N -0.49 -6.64 4.88 -178.62 -0.87 -7.51 16 17 C 0.03 0.28 8.84 60.07 0.53 0.81 16 18 N -0.45 -12.34 7.01 -7.58 -0.05 -12.40 16 19 C 0.26 7.07 6.53 -84.86 -0.55 6.51 16 20 C -0.41 -11.23 8.92 -37.89 -0.34 -11.57 16 21 H 0.09 2.39 7.34 -52.49 -0.39 2.00 16 22 C 0.07 1.80 5.47 -17.34 -0.09 1.71 16 23 N -0.72 -18.81 11.45 55.55 0.64 -18.18 16 24 Si 0.91 18.87 29.57 -169.99 -5.03 13.85 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 30 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.10 1.99 6.43 -52.49 -0.34 1.65 16 32 H 0.10 1.95 6.16 -52.49 -0.32 1.63 16 33 H 0.13 2.03 6.15 -52.49 -0.32 1.71 16 34 H 0.12 1.59 6.09 -52.49 -0.32 1.27 16 35 H 0.16 3.99 7.40 -52.49 -0.39 3.60 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.08 0.75 6.39 -51.93 -0.33 0.42 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -31.18 351.42 -8.90 -40.08 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.30 Total: 6.18 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.20 Total: -14.36 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.29 Total: -38.08 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.39 Total: -12.96 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.18 -8.90 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243940979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.986 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds