Wall clock time and date at job start Tue Mar 31 2020 14:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35536 * 117.00027 * 2 1 4 4 C 1.39145 * 120.47620 * 359.97438 * 3 2 1 5 5 C 1.38291 * 118.64714 * 180.02562 * 4 3 2 6 6 C 1.40155 * 119.56831 * 359.97438 * 5 4 3 7 7 C 1.48136 * 119.51997 * 180.29998 * 6 5 4 8 8 C 1.39514 * 120.12360 * 359.79157 * 7 6 5 9 9 C 1.37704 * 119.98536 * 180.02562 * 8 7 6 10 10 C 1.39373 * 120.42498 * 0.02562 * 9 8 7 11 11 C 1.39193 * 119.72239 * 359.78755 * 10 9 8 12 12 C 1.38475 * 120.00329 * 0.04525 * 11 10 9 13 13 O 1.36164 * 121.35974 * 180.57461 * 11 10 9 14 14 C 1.43136 * 116.66576 * 344.79840 * 13 11 10 15 15 C 1.53422 * 107.87965 * 45.35435 * 14 13 11 16 16 N 1.39604 * 118.46159 * 179.47651 * 10 9 8 17 17 C 1.46905 * 110.99883 * 35.15704 * 16 10 9 18 18 N 1.32225 * 120.95422 * 0.02562 * 6 5 4 19 19 C 1.33597 * 121.45159 * 0.02562 * 18 6 5 20 20 C 1.40969 * 119.83256 * 180.02562 * 19 18 6 21 21 H 1.08000 * 120.00040 * 187.40338 * 20 19 18 22 22 C 1.39998 * 120.00219 * 7.40097 * 20 19 18 23 23 N 1.30789 * 119.99771 * 7.34054 * 22 20 19 24 24 Si 1.86805 * 120.00410 * 187.33712 * 22 20 19 25 25 H 1.48503 * 109.46770 * 84.98830 * 24 22 20 26 26 H 1.48497 * 109.47351 * 204.98654 * 24 22 20 27 27 H 1.48503 * 109.46646 * 324.99061 * 24 22 20 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47209 * 300.00101 * 1 2 3 30 30 H 1.09001 * 109.47601 * 59.99960 * 1 2 3 31 31 H 1.07996 * 120.67392 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.21303 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.00563 * 0.05146 * 8 7 6 34 34 H 1.07999 * 119.79312 * 180.02562 * 9 8 7 35 35 H 1.07991 * 119.94097 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.77605 * 164.94660 * 14 13 11 37 37 H 1.08999 * 109.77796 * 285.75769 * 14 13 11 38 38 H 1.09001 * 109.61088 * 56.51152 * 15 14 13 39 39 H 1.08996 * 109.61511 * 176.85642 * 15 14 13 40 40 H 1.08995 * 109.47162 * 56.04227 * 17 16 10 41 41 H 1.08992 * 109.46953 * 176.04742 * 17 16 10 42 42 H 1.09001 * 109.46831 * 296.04403 * 17 16 10 43 43 H 0.97006 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2961 2.3809 -0.0005 5 6 1.9630 3.5924 -0.0011 6 6 3.3644 3.6105 -0.0005 7 6 4.0776 4.9088 0.0057 8 6 3.3571 6.1035 0.0065 9 6 4.0230 7.3088 0.0117 10 6 5.4162 7.3454 0.0157 11 6 6.1379 6.1551 0.0188 12 6 5.4714 4.9413 0.0171 13 8 7.4994 6.1520 0.0344 14 6 8.1484 7.3863 -0.2883 15 6 7.4366 8.5076 0.4798 16 7 6.0491 8.5897 0.0097 17 6 5.2859 9.5723 0.7910 18 7 4.0591 2.4854 0.0000 19 6 3.4556 1.2935 -0.0005 20 6 4.2298 0.1154 0.0007 21 1 3.7514 -0.8452 -0.1203 22 6 5.6188 0.1908 0.1585 23 7 6.1830 1.3347 0.4477 24 14 6.6665 -1.3426 -0.0440 25 1 6.9831 -1.5393 -1.4815 26 1 7.9278 -1.1852 0.7236 27 1 5.9211 -2.5219 0.4647 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2167 2.3460 -0.0005 32 1 1.4075 4.5185 -0.0011 33 1 2.2773 6.0829 0.0035 34 1 3.4621 8.2317 0.0128 35 1 6.0323 4.0185 0.0199 36 1 9.1956 7.3415 0.0107 37 1 8.0777 7.5709 -1.3602 38 1 7.4489 8.2850 1.5468 39 1 7.9440 9.4549 0.2978 40 1 5.1394 9.1965 1.8036 41 1 5.8356 10.5127 0.8283 42 1 4.3165 9.7365 0.3205 43 1 7.1455 1.3870 0.5567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243940979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:41 Heat of formation + Delta-G solvation = -15.496703 kcal Electronic energy + Delta-G solvation = -27285.548528 eV Core-core repulsion = 23488.927726 eV Total energy + Delta-G solvation = -3796.620802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95928 -40.71760 -38.95908 -38.05060 -37.41041 -35.49867 -32.67455 -32.35229 -31.42494 -30.69037 -29.62756 -28.07297 -27.51034 -25.84175 -25.25586 -23.61280 -22.90119 -22.39871 -20.86940 -19.50082 -18.85483 -18.46112 -17.81692 -17.55732 -17.30264 -16.53374 -16.31594 -16.09210 -16.07181 -15.47221 -15.32187 -15.04918 -14.88642 -14.68181 -14.44975 -14.31266 -14.10680 -13.67824 -13.37756 -13.11869 -13.00951 -12.90258 -12.86127 -12.67174 -12.49902 -12.34149 -12.12671 -12.07044 -11.77063 -11.65344 -11.47168 -11.25455 -10.77007 -10.04072 -9.59644 -9.48548 -9.12624 -8.36563 -8.22970 -6.34270 -0.01635 0.52908 0.97154 1.22497 1.39557 1.52601 1.54600 2.24473 2.32798 2.61351 2.79807 2.84685 3.07436 3.60669 3.70539 3.85420 3.93698 4.08928 4.09335 4.17985 4.27180 4.38135 4.44506 4.48980 4.52378 4.54499 4.57945 4.62373 4.70657 4.73829 4.74223 4.82988 4.89751 4.97215 5.10392 5.18091 5.28005 5.32119 5.48702 5.65002 5.71657 5.85720 5.92545 6.00771 6.16729 6.32448 6.41897 6.54135 6.82127 7.15359 8.12740 8.45863 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.004052 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.575713 B = 6908.907178 C = 9005.900939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C -0.046 4.046 4 C -0.145 4.145 5 C -0.261 4.261 6 C 0.126 3.874 7 C -0.036 4.036 8 C -0.110 4.110 9 C -0.124 4.124 10 C 0.038 3.962 11 C 0.065 3.935 12 C -0.113 4.113 13 O -0.340 6.340 14 C 0.047 3.953 15 C 0.016 3.984 16 N -0.496 5.496 17 C 0.022 3.978 18 N -0.483 5.483 19 C 0.218 3.782 20 C -0.456 4.456 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.754 5.754 24 Si 0.983 3.017 25 H -0.264 1.264 26 H -0.267 1.267 27 H -0.256 1.256 28 H 0.113 0.887 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.135 0.865 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 14.913 0.554 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.094 4.094 4 C -0.169 4.169 5 C -0.284 4.284 6 C -0.014 4.014 7 C -0.038 4.038 8 C -0.130 4.130 9 C -0.144 4.144 10 C -0.060 4.060 11 C 0.018 3.982 12 C -0.133 4.133 13 O -0.255 6.255 14 C -0.028 4.028 15 C -0.111 4.111 16 N -0.212 5.212 17 C -0.123 4.123 18 N -0.198 5.198 19 C 0.089 3.911 20 C -0.488 4.488 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.377 5.377 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.192 1.192 27 H -0.180 1.180 28 H 0.132 0.868 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.153 0.847 40 H 0.053 0.947 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.389 14.925 0.201 14.932 hybrid contribution -0.641 -1.005 0.529 1.303 sum -0.252 13.921 0.729 13.942 Atomic orbital electron populations 1.23126 0.78481 1.04424 1.01046 1.85883 1.21652 1.27154 1.90027 1.20416 0.93373 0.84866 1.10760 1.21277 0.99583 0.91633 1.04402 1.21422 0.93518 0.97895 1.15582 1.20186 0.90874 0.92307 0.98040 1.18539 0.91770 0.92031 1.01427 1.21204 1.00782 0.90278 1.00700 1.21030 0.91277 0.98829 1.03265 1.19049 0.93881 0.88491 1.04601 1.18620 0.82682 0.92825 1.04030 1.20761 0.94414 0.96438 1.01720 1.86253 1.16041 1.37151 1.86076 1.23474 0.98055 0.80955 1.00295 1.22913 0.88134 1.02119 0.97898 1.58853 1.03714 1.05423 1.53196 1.22666 0.99704 0.94727 0.95164 1.68772 1.36569 0.96180 1.18266 1.18540 0.86949 0.92481 0.93087 1.19668 0.92527 0.93115 1.43491 0.89717 1.26881 0.99378 1.00406 0.92683 1.70149 1.11836 1.27163 1.28518 0.85211 0.77290 0.77851 0.79272 1.18915 1.19163 1.18013 0.86840 0.92967 0.92860 0.83968 0.84433 0.83404 0.81797 0.86230 0.84219 0.91021 0.93088 0.84676 0.94651 0.88029 0.89155 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.83 113.37 1.11 1.88 16 2 O -0.33 -15.47 9.62 -88.40 -0.85 -16.32 16 3 C -0.05 -2.35 6.74 23.27 0.16 -2.19 16 4 C -0.14 -6.42 9.11 22.50 0.21 -6.21 16 5 C -0.26 -11.64 9.46 22.75 0.22 -11.42 16 6 C 0.13 6.48 6.74 42.18 0.28 6.76 16 7 C -0.04 -1.62 5.88 -20.06 -0.12 -1.73 16 8 C -0.11 -3.82 9.40 22.45 0.21 -3.60 16 9 C -0.12 -3.61 9.05 22.42 0.20 -3.41 16 10 C 0.04 1.22 5.82 38.41 0.22 1.44 16 11 C 0.07 2.57 6.47 22.56 0.15 2.72 16 12 C -0.11 -5.35 9.46 22.61 0.21 -5.13 16 13 O -0.34 -12.52 10.40 -95.42 -0.99 -13.51 16 14 C 0.05 1.11 7.26 72.12 0.52 1.63 16 15 C 0.02 0.31 5.69 86.48 0.49 0.80 16 16 N -0.50 -11.68 4.88 -719.03 -3.51 -15.19 16 17 C 0.02 0.36 8.84 127.69 1.13 1.49 16 18 N -0.48 -28.26 7.01 -177.88 -1.25 -29.51 16 19 C 0.22 12.80 6.53 40.32 0.26 13.06 16 20 C -0.46 -26.50 8.92 23.37 0.21 -26.29 16 21 H 0.08 4.79 7.34 -2.91 -0.02 4.77 16 22 C 0.03 1.51 5.47 85.27 0.47 1.98 16 23 N -0.75 -42.83 11.45 21.83 0.25 -42.58 16 24 Si 0.98 40.97 29.57 68.60 2.03 43.00 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 27 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.05 1.51 7.69 -2.39 -0.02 1.50 16 30 H 0.05 1.53 7.69 -2.39 -0.02 1.52 16 31 H 0.14 5.05 6.43 -2.91 -0.02 5.04 16 32 H 0.14 4.95 6.16 -2.91 -0.02 4.94 16 33 H 0.15 4.32 6.15 -2.91 -0.02 4.30 16 34 H 0.16 3.40 6.09 -2.91 -0.02 3.38 16 35 H 0.12 6.60 7.40 -2.92 -0.02 6.57 16 36 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 39 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 42 H 0.09 1.24 6.39 -2.39 -0.02 1.23 16 43 H 0.28 14.48 8.30 -92.70 -0.77 13.71 16 Total: -1.00 -76.43 351.42 2.67 -73.76 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.05 Total: 28.56 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 5.94 Total: -28.23 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -4.50 Total: -87.27 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.84 Total: -29.83 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -76.43 2.67 -73.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243940979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.268 kcal (2) G-P(sol) polarization free energy of solvation -76.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds