Wall clock time and date at job start Tue Mar 31 2020 14:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35531 * 117.00164 * 2 1 4 4 C 1.39116 * 120.48201 * 359.97438 * 3 2 1 5 5 C 1.38332 * 118.63153 * 179.76980 * 4 3 2 6 6 C 1.40072 * 119.57385 * 0.49756 * 5 4 3 7 7 C 1.48263 * 119.51695 * 179.77009 * 6 5 4 8 8 C 1.39446 * 120.51578 * 346.00414 * 7 6 5 9 9 N 1.31688 * 120.70540 * 180.02562 * 8 7 6 10 10 C 1.31885 * 121.92140 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.96539 * 359.71982 * 10 9 8 12 12 O 1.35913 * 120.41123 * 180.29365 * 11 10 9 13 13 C 1.42895 * 117.00053 * 0.26267 * 12 11 10 14 14 C 1.53004 * 109.47381 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49722 * 243.75088 * 14 13 12 16 16 C 1.53003 * 117.49812 * 175.09060 * 14 13 12 17 17 C 1.38907 * 119.17581 * 0.55152 * 11 10 9 18 18 N 1.32171 * 120.96274 * 359.49386 * 6 5 4 19 19 C 1.33569 * 121.46574 * 0.24876 * 18 6 5 20 20 C 1.41007 * 119.83405 * 180.02562 * 19 18 6 21 21 H 1.08003 * 119.99906 * 158.23837 * 20 19 18 22 22 C 1.40019 * 119.99984 * 338.23622 * 20 19 18 23 23 N 1.30781 * 119.99922 * 168.01389 * 22 20 19 24 24 Si 1.86806 * 120.00239 * 348.02218 * 22 20 19 25 25 H 1.48496 * 109.46818 * 86.23493 * 24 22 20 26 26 H 1.48496 * 109.47145 * 206.23439 * 24 22 20 27 27 H 1.48497 * 109.46608 * 326.23710 * 24 22 20 28 28 H 1.09005 * 109.46767 * 299.99970 * 1 2 3 29 29 H 1.09003 * 109.47139 * 59.99511 * 1 2 3 30 30 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.07991 * 120.68450 * 0.02572 * 4 3 2 32 32 H 1.07999 * 120.21221 * 180.24632 * 5 4 3 33 33 H 1.07998 * 119.64609 * 0.04802 * 8 7 6 34 34 H 1.08000 * 119.51567 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47401 * 300.00931 * 13 12 11 36 36 H 1.09006 * 109.47271 * 60.00228 * 13 12 11 37 37 H 1.08995 * 115.54522 * 29.42170 * 14 13 12 38 38 H 1.08998 * 117.50230 * 359.97438 * 15 14 13 39 39 H 1.09001 * 117.49906 * 145.02356 * 15 14 13 40 40 H 1.09004 * 117.49466 * 214.97670 * 16 14 13 41 41 H 1.08999 * 117.50070 * 359.97438 * 16 14 13 42 42 H 1.08004 * 120.86831 * 179.72947 * 17 11 10 43 43 H 0.96990 * 119.99944 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 -0.0005 5 6 1.9640 3.5923 0.0044 6 6 3.3646 3.6099 -0.0009 7 6 4.0788 4.9093 -0.0008 8 6 3.3972 6.0918 -0.2862 9 7 4.0279 7.2479 -0.2877 10 6 5.3167 7.3395 -0.0232 11 6 6.0664 6.2102 0.2760 12 8 7.3927 6.3183 0.5527 13 6 7.9564 7.6311 0.5244 14 6 9.4476 7.5532 0.8578 15 6 9.9232 8.2488 2.1348 16 6 10.2604 8.8462 0.7663 17 6 5.4455 4.9677 0.2838 18 7 4.0589 2.4852 -0.0004 19 6 3.4557 1.2935 0.0001 20 6 4.2302 0.1152 0.0011 21 1 3.8008 -0.8130 0.3482 22 6 5.5560 0.1485 -0.4480 23 7 6.3450 -0.8721 -0.2332 24 14 6.1979 1.6509 -1.3538 25 1 6.6833 2.6519 -0.3702 26 1 7.3158 1.2510 -2.2458 27 1 5.1049 2.2439 -2.1654 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2172 2.3461 -0.0005 32 1 1.4088 4.5186 0.0081 33 1 2.3408 6.0593 -0.5081 34 1 5.7947 8.3078 -0.0347 35 1 7.8285 8.0601 -0.4695 36 1 7.4519 8.2591 1.2587 37 1 9.9445 6.6252 0.5751 38 1 9.1739 8.7623 2.7372 39 1 10.7335 7.7787 2.6921 40 1 11.2924 8.7687 0.4240 41 1 9.7330 9.7523 0.4683 42 1 6.0035 4.0707 0.5085 43 1 7.2634 -0.8489 -0.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245246206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:48 Heat of formation + Delta-G solvation = 11.412160 kcal Electronic energy + Delta-G solvation = -26629.393468 eV Core-core repulsion = 22833.939522 eV Total energy + Delta-G solvation = -3795.453946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49787 -39.34779 -38.45988 -37.15886 -36.78408 -33.90751 -32.47864 -31.40744 -30.53677 -29.10461 -27.72562 -26.84882 -25.83925 -23.46832 -23.16933 -22.70355 -21.58063 -20.93743 -20.52831 -18.13056 -17.73677 -17.22414 -16.81799 -16.21870 -16.07509 -15.87298 -15.40604 -15.05177 -14.91052 -14.51252 -14.27628 -13.64280 -13.50070 -13.47263 -13.11030 -12.98284 -12.71405 -12.46661 -12.09961 -11.97075 -11.89043 -11.73391 -11.50402 -11.45171 -10.90721 -10.89158 -10.77214 -10.72722 -10.54928 -10.28650 -10.02124 -9.43327 -9.27430 -9.16874 -8.63136 -8.32128 -8.10825 -7.26825 -6.96272 -4.63478 1.02661 1.55839 2.37698 2.56688 2.95469 3.36065 3.40816 3.51434 3.51633 4.02681 4.11546 4.27418 4.39222 4.50979 4.54272 4.58256 4.71504 4.80767 4.94172 5.02596 5.11336 5.26145 5.30498 5.36410 5.38687 5.46475 5.51705 5.55380 5.56949 5.62352 5.75207 5.77413 5.87096 5.88774 5.95055 6.15978 6.32005 6.41555 6.63913 6.68628 6.95155 7.07806 7.16544 7.37326 7.47895 7.95337 8.12756 8.17379 8.51963 8.59584 9.35973 9.98172 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003619 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.083762 B = 7735.887800 C = 9340.966572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.005 3.995 4 C -0.146 4.146 5 C -0.250 4.250 6 C 0.163 3.837 7 C -0.026 4.026 8 C 0.071 3.929 9 N -0.453 5.453 10 C 0.001 3.999 11 C 0.076 3.924 12 O -0.306 6.306 13 C 0.089 3.911 14 C -0.156 4.156 15 C -0.176 4.176 16 C -0.170 4.170 17 C -0.091 4.091 18 N -0.535 5.535 19 C 0.244 3.756 20 C -0.395 4.395 21 H 0.105 0.895 22 C 0.088 3.912 23 N -0.794 5.794 24 Si 0.972 3.028 25 H -0.259 1.259 26 H -0.320 1.320 27 H -0.268 1.268 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.159 0.841 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 14.195 1.044 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.214 6.214 3 C -0.044 4.044 4 C -0.170 4.170 5 C -0.274 4.274 6 C 0.025 3.975 7 C -0.028 4.028 8 C -0.089 4.089 9 N -0.162 5.162 10 C -0.156 4.156 11 C 0.028 3.972 12 O -0.218 6.218 13 C 0.013 3.987 14 C -0.175 4.175 15 C -0.213 4.213 16 C -0.207 4.207 17 C -0.117 4.117 18 N -0.255 5.255 19 C 0.117 3.883 20 C -0.426 4.426 21 H 0.122 0.878 22 C -0.135 4.135 23 N -0.417 5.417 24 Si 0.804 3.196 25 H -0.186 1.186 26 H -0.251 1.251 27 H -0.193 1.193 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.177 0.823 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.134 14.415 0.937 14.602 hybrid contribution -0.475 0.065 -0.173 0.510 sum 1.660 14.480 0.764 14.594 Atomic orbital electron populations 1.22852 0.80975 1.02499 1.00192 1.86004 1.18854 1.27191 1.89310 1.20135 0.93185 0.83654 1.07411 1.20978 0.98405 0.92257 1.05311 1.20889 0.93149 0.96925 1.16412 1.19018 0.89894 0.90034 0.98527 1.19599 0.92427 0.93675 0.97140 1.22771 1.00366 0.86459 0.99255 1.67459 1.08962 1.28040 1.11702 1.22749 0.91158 0.97329 1.04376 1.19946 0.83825 0.95179 0.98206 1.86089 1.20144 1.30327 1.85263 1.22307 0.91929 0.83233 1.01199 1.22109 0.93673 0.98354 1.03324 1.23115 1.03783 1.03619 0.90749 1.23002 1.00838 0.96181 1.00710 1.21498 0.94092 0.96699 0.99439 1.67234 1.37192 0.97011 1.24101 1.18007 0.86633 0.90997 0.92623 1.19363 0.94858 0.94768 1.33641 0.87751 1.26292 0.95796 0.97947 0.93477 1.69638 1.07217 1.30992 1.33844 0.85144 0.76352 0.79488 0.78573 1.18562 1.25101 1.19299 0.93832 0.93793 0.89385 0.86786 0.87113 0.82162 0.83130 0.91475 0.91774 0.86376 0.88501 0.88355 0.88175 0.88500 0.82347 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.83 101.05 0.99 1.46 16 2 O -0.30 -6.47 9.73 -18.29 -0.18 -6.65 16 3 C 0.01 0.12 6.74 -38.06 -0.26 -0.14 16 4 C -0.15 -2.92 9.11 -39.22 -0.36 -3.28 16 5 C -0.25 -4.97 9.43 -38.86 -0.37 -5.34 16 6 C 0.16 3.61 6.70 -82.91 -0.56 3.06 16 7 C -0.03 -0.51 5.87 -104.77 -0.61 -1.12 16 8 C 0.07 1.22 10.55 -17.16 -0.18 1.04 16 9 N -0.45 -7.55 10.34 -12.82 -0.13 -7.68 16 10 C 0.00 0.02 10.21 -17.32 -0.18 -0.16 16 11 C 0.08 1.29 6.70 -39.12 -0.26 1.03 16 12 O -0.31 -4.78 10.15 -19.47 -0.20 -4.98 16 13 C 0.09 0.98 5.03 37.16 0.19 1.16 16 14 C -0.16 -1.53 6.05 -90.62 -0.55 -2.08 16 15 C -0.18 -1.43 10.18 -26.69 -0.27 -1.71 16 16 C -0.17 -1.25 10.26 -26.69 -0.27 -1.52 16 17 C -0.09 -1.81 9.59 -38.78 -0.37 -2.18 16 18 N -0.54 -13.36 4.98 -7.57 -0.04 -13.40 16 19 C 0.24 6.29 6.03 -84.86 -0.51 5.78 16 20 C -0.39 -10.78 9.37 -37.87 -0.35 -11.14 16 21 H 0.10 2.97 7.73 -52.48 -0.41 2.56 16 22 C 0.09 2.35 5.51 -17.33 -0.10 2.25 16 23 N -0.79 -21.15 13.93 55.55 0.77 -20.38 16 24 Si 0.97 23.69 25.26 -169.99 -4.29 19.40 16 25 H -0.26 -6.17 4.96 56.52 0.28 -5.89 16 26 H -0.32 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.27 -6.84 6.91 56.52 0.39 -6.45 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.89 6.43 -52.49 -0.34 1.55 16 32 H 0.11 1.83 6.42 -52.49 -0.34 1.49 16 33 H 0.16 2.39 6.40 -52.49 -0.34 2.05 16 34 H 0.15 1.79 6.30 -52.49 -0.33 1.46 16 35 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 36 H 0.06 0.62 7.42 -51.93 -0.39 0.24 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.16 3.48 5.32 -52.48 -0.28 3.20 16 43 H 0.29 7.03 8.29 -40.82 -0.34 6.69 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -30.12 356.60 -8.12 -38.24 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.40 Total: 2.95 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.02 Total: -12.87 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.60 Total: -41.46 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.38 Total: -11.63 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.29 Total: 19.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.12 -8.12 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245246206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.652 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds