Wall clock time and date at job start Tue Mar 31 2020 14:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35531 * 117.00164 * 2 1 4 4 C 1.39116 * 120.48201 * 359.97438 * 3 2 1 5 5 C 1.38332 * 118.63153 * 179.76980 * 4 3 2 6 6 C 1.40072 * 119.57385 * 0.49756 * 5 4 3 7 7 C 1.48263 * 119.51695 * 179.77009 * 6 5 4 8 8 C 1.39446 * 120.51578 * 346.00414 * 7 6 5 9 9 N 1.31688 * 120.70540 * 180.02562 * 8 7 6 10 10 C 1.31885 * 121.92140 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.96539 * 359.71982 * 10 9 8 12 12 O 1.35913 * 120.41123 * 180.29365 * 11 10 9 13 13 C 1.42895 * 117.00053 * 0.26267 * 12 11 10 14 14 C 1.53004 * 109.47381 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49722 * 243.75088 * 14 13 12 16 16 C 1.53003 * 117.49812 * 175.09060 * 14 13 12 17 17 C 1.38907 * 119.17581 * 0.55152 * 11 10 9 18 18 N 1.32171 * 120.96274 * 359.49386 * 6 5 4 19 19 C 1.33569 * 121.46574 * 0.24876 * 18 6 5 20 20 C 1.41007 * 119.83405 * 180.02562 * 19 18 6 21 21 H 1.08003 * 119.99906 * 158.23837 * 20 19 18 22 22 C 1.40019 * 119.99984 * 338.23622 * 20 19 18 23 23 N 1.30781 * 119.99922 * 168.01389 * 22 20 19 24 24 Si 1.86806 * 120.00239 * 348.02218 * 22 20 19 25 25 H 1.48496 * 109.46818 * 86.23493 * 24 22 20 26 26 H 1.48496 * 109.47145 * 206.23439 * 24 22 20 27 27 H 1.48497 * 109.46608 * 326.23710 * 24 22 20 28 28 H 1.09005 * 109.46767 * 299.99970 * 1 2 3 29 29 H 1.09003 * 109.47139 * 59.99511 * 1 2 3 30 30 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.07991 * 120.68450 * 0.02572 * 4 3 2 32 32 H 1.07999 * 120.21221 * 180.24632 * 5 4 3 33 33 H 1.07998 * 119.64609 * 0.04802 * 8 7 6 34 34 H 1.08000 * 119.51567 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47401 * 300.00931 * 13 12 11 36 36 H 1.09006 * 109.47271 * 60.00228 * 13 12 11 37 37 H 1.08995 * 115.54522 * 29.42170 * 14 13 12 38 38 H 1.08998 * 117.50230 * 359.97438 * 15 14 13 39 39 H 1.09001 * 117.49906 * 145.02356 * 15 14 13 40 40 H 1.09004 * 117.49466 * 214.97670 * 16 14 13 41 41 H 1.08999 * 117.50070 * 359.97438 * 16 14 13 42 42 H 1.08004 * 120.86831 * 179.72947 * 17 11 10 43 43 H 0.96990 * 119.99944 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 -0.0005 5 6 1.9640 3.5923 0.0044 6 6 3.3646 3.6099 -0.0009 7 6 4.0788 4.9093 -0.0008 8 6 3.3972 6.0918 -0.2862 9 7 4.0279 7.2479 -0.2877 10 6 5.3167 7.3395 -0.0232 11 6 6.0664 6.2102 0.2760 12 8 7.3927 6.3183 0.5527 13 6 7.9564 7.6311 0.5244 14 6 9.4476 7.5532 0.8578 15 6 9.9232 8.2488 2.1348 16 6 10.2604 8.8462 0.7663 17 6 5.4455 4.9677 0.2838 18 7 4.0589 2.4852 -0.0004 19 6 3.4557 1.2935 0.0001 20 6 4.2302 0.1152 0.0011 21 1 3.8008 -0.8130 0.3482 22 6 5.5560 0.1485 -0.4480 23 7 6.3450 -0.8721 -0.2332 24 14 6.1979 1.6509 -1.3538 25 1 6.6833 2.6519 -0.3702 26 1 7.3158 1.2510 -2.2458 27 1 5.1049 2.2439 -2.1654 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2172 2.3461 -0.0005 32 1 1.4088 4.5186 0.0081 33 1 2.3408 6.0593 -0.5081 34 1 5.7947 8.3078 -0.0347 35 1 7.8285 8.0601 -0.4695 36 1 7.4519 8.2591 1.2587 37 1 9.9445 6.6252 0.5751 38 1 9.1739 8.7623 2.7372 39 1 10.7335 7.7787 2.6921 40 1 11.2924 8.7687 0.4240 41 1 9.7330 9.7523 0.4683 42 1 6.0035 4.0707 0.5085 43 1 7.2634 -0.8489 -0.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245246206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:47 Heat of formation + Delta-G solvation = -6.966705 kcal Electronic energy + Delta-G solvation = -26630.190436 eV Core-core repulsion = 22833.939522 eV Total energy + Delta-G solvation = -3796.250914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81479 -40.96138 -39.60200 -38.63139 -37.73810 -35.76401 -33.99509 -33.11812 -31.94811 -30.68578 -28.66408 -28.25460 -27.51592 -24.91694 -24.56073 -23.29406 -23.21948 -22.29190 -21.56488 -19.74582 -19.28217 -18.75857 -18.06336 -17.60118 -17.53313 -17.08344 -16.84562 -16.43010 -16.16331 -16.04299 -15.24523 -15.05449 -14.93585 -14.88901 -14.71924 -14.34630 -14.23206 -14.13678 -13.55577 -13.36989 -13.07963 -12.84418 -12.72392 -12.68766 -12.40236 -12.37428 -12.28941 -12.13624 -11.77543 -11.42819 -11.31859 -11.02819 -10.75104 -10.59550 -10.36415 -9.91525 -9.62134 -8.95552 -8.91487 -6.58649 -0.41088 0.18812 0.59381 0.91619 1.35887 1.45629 1.52749 1.93208 2.27482 2.47032 2.68569 2.79739 2.84162 3.28386 3.50079 3.53986 3.64708 3.70055 3.86933 3.95959 3.97907 4.05442 4.09596 4.17204 4.18470 4.33122 4.42530 4.48576 4.51766 4.54078 4.62972 4.73002 4.75559 4.75802 4.90641 4.98230 5.09118 5.14609 5.21254 5.21783 5.27548 5.42289 5.49146 5.82278 6.10974 6.19203 6.21650 6.58822 6.81176 6.89504 7.54958 8.08999 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003619 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.083762 B = 7735.887800 C = 9340.966572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C -0.007 4.007 4 C -0.136 4.136 5 C -0.219 4.219 6 C 0.134 3.866 7 C -0.047 4.047 8 C 0.080 3.920 9 N -0.452 5.452 10 C 0.020 3.980 11 C 0.078 3.922 12 O -0.327 6.327 13 C 0.081 3.919 14 C -0.182 4.182 15 C -0.178 4.178 16 C -0.149 4.149 17 C -0.119 4.119 18 N -0.552 5.552 19 C 0.223 3.777 20 C -0.440 4.440 21 H 0.074 0.926 22 C 0.063 3.937 23 N -0.835 5.835 24 Si 1.017 2.983 25 H -0.260 1.260 26 H -0.312 1.312 27 H -0.287 1.287 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.189 0.811 34 H 0.192 0.808 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 18.798 0.793 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C -0.056 4.056 4 C -0.160 4.160 5 C -0.242 4.242 6 C -0.003 4.003 7 C -0.050 4.050 8 C -0.079 4.079 9 N -0.161 5.161 10 C -0.138 4.138 11 C 0.031 3.969 12 O -0.240 6.240 13 C 0.007 3.993 14 C -0.200 4.200 15 C -0.214 4.214 16 C -0.186 4.186 17 C -0.146 4.146 18 N -0.271 5.271 19 C 0.094 3.906 20 C -0.473 4.473 21 H 0.092 0.908 22 C -0.155 4.155 23 N -0.461 5.461 24 Si 0.849 3.151 25 H -0.187 1.187 26 H -0.244 1.244 27 H -0.214 1.214 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.206 0.794 34 H 0.209 0.791 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.009 19.040 0.691 19.052 hybrid contribution -0.039 -1.071 -0.028 1.072 sum -0.030 17.969 0.663 17.981 Atomic orbital electron populations 1.23251 0.77581 1.04838 1.01779 1.85974 1.22388 1.26877 1.89251 1.20223 0.92639 0.85458 1.07293 1.21495 1.00606 0.90889 1.02989 1.21525 0.92425 0.98863 1.11348 1.19605 0.91472 0.90141 0.99047 1.19604 0.92498 0.93607 0.99298 1.23065 1.01368 0.85407 0.98070 1.67599 1.09410 1.27405 1.11670 1.23329 0.90601 0.98186 1.01682 1.19917 0.84648 0.94610 0.97772 1.86092 1.19476 1.33449 1.84966 1.22671 0.92448 0.81439 1.02782 1.22100 0.93305 0.99116 1.05517 1.23220 1.03959 1.03347 0.90920 1.23123 1.00973 0.95155 0.99364 1.21375 0.94706 0.97029 1.01460 1.67100 1.38706 0.97722 1.23570 1.18140 0.88427 0.90823 0.93189 1.19187 0.95880 0.94673 1.37604 0.90799 1.26664 0.95863 0.99204 0.93812 1.69651 1.07813 1.32178 1.36507 0.84498 0.75359 0.77683 0.77562 1.18661 1.24350 1.21371 0.92034 0.91994 0.87053 0.82225 0.82417 0.79435 0.79123 0.89813 0.89884 0.88195 0.87722 0.88217 0.87268 0.86783 0.85667 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.83 113.37 1.11 1.67 16 2 O -0.33 -14.27 9.73 -88.35 -0.86 -15.13 16 3 C -0.01 -0.34 6.74 23.26 0.16 -0.19 16 4 C -0.14 -4.97 9.11 22.50 0.21 -4.77 16 5 C -0.22 -7.89 9.43 22.74 0.21 -7.68 16 6 C 0.13 5.81 6.70 42.21 0.28 6.09 16 7 C -0.05 -1.82 5.87 -19.96 -0.12 -1.93 16 8 C 0.08 2.46 10.55 85.01 0.90 3.36 16 9 N -0.45 -13.23 10.34 -194.49 -2.01 -15.24 16 10 C 0.02 0.53 10.21 84.82 0.87 1.40 16 11 C 0.08 2.56 6.70 22.57 0.15 2.71 16 12 O -0.33 -9.98 10.15 -92.58 -0.94 -10.92 16 13 C 0.08 1.59 5.03 71.98 0.36 1.95 16 14 C -0.18 -3.30 6.05 -10.79 -0.07 -3.37 16 15 C -0.18 -2.55 10.18 30.62 0.31 -2.23 16 16 C -0.15 -1.78 10.26 30.62 0.31 -1.46 16 17 C -0.12 -4.78 9.59 22.79 0.22 -4.56 16 18 N -0.55 -28.30 4.98 -177.85 -0.89 -29.19 16 19 C 0.22 11.95 6.03 40.34 0.24 12.20 16 20 C -0.44 -25.93 9.37 23.38 0.22 -25.71 16 21 H 0.07 4.62 7.73 -2.91 -0.02 4.60 16 22 C 0.06 3.60 5.51 85.28 0.47 4.07 16 23 N -0.84 -47.90 13.93 21.84 0.30 -47.59 16 24 Si 1.02 51.99 25.26 68.60 1.73 53.72 16 25 H -0.26 -13.14 4.96 99.48 0.49 -12.65 16 26 H -0.31 -15.18 7.11 99.48 0.71 -14.48 16 27 H -0.29 -15.31 6.91 99.48 0.69 -14.62 16 28 H 0.06 1.48 7.69 -2.38 -0.02 1.46 16 29 H 0.06 1.49 7.69 -2.39 -0.02 1.47 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.16 4.37 6.43 -2.92 -0.02 4.35 16 32 H 0.16 4.19 6.42 -2.91 -0.02 4.18 16 33 H 0.19 4.57 6.40 -2.91 -0.02 4.55 16 34 H 0.19 3.53 6.30 -2.91 -0.02 3.52 16 35 H 0.08 1.35 7.66 -2.38 -0.02 1.33 16 36 H 0.08 1.31 7.42 -2.38 -0.02 1.29 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.13 5.83 5.32 -2.91 -0.02 5.82 16 43 H 0.29 15.37 8.29 -92.72 -0.77 14.60 16 Total: -1.00 -72.04 356.60 4.00 -68.03 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.82 Total: 14.77 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 5.84 Total: -18.46 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -2.59 Total: -92.02 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.80 Total: -26.05 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 1.73 Total: 53.72 kcal Total: -72.04 4.00 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245246206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.068 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds