Wall clock time and date at job start Tue Mar 31 2020 14:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 117.00146 * 2 1 4 4 C 1.38415 * 119.93887 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.89518 * 180.02562 * 4 3 2 6 6 C 1.38106 * 120.02587 * 0.09683 * 5 4 3 7 7 C 1.38598 * 120.41159 * 359.97438 * 6 5 4 8 8 C 1.38230 * 119.86880 * 359.83697 * 7 6 5 9 9 O 1.35936 * 121.81951 * 180.60777 * 8 7 6 10 10 C 1.42826 * 117.87108 * 342.64556 * 9 8 7 11 11 C 1.53404 * 108.38693 * 49.11249 * 10 9 8 12 12 C 1.50775 * 118.73319 * 179.62667 * 7 6 5 13 13 H 1.09002 * 109.43874 * 282.15332 * 12 7 6 14 14 N 1.46503 * 109.43335 * 42.06574 * 12 7 6 15 15 C 1.38826 * 119.99833 * 274.99652 * 14 12 7 16 16 C 1.39801 * 119.58467 * 0.02562 * 15 14 12 17 17 C 1.38592 * 119.48991 * 179.97438 * 16 15 14 18 18 C 1.38392 * 118.68203 * 0.02562 * 17 16 15 19 19 C 1.40560 * 119.15001 * 359.97438 * 18 17 16 20 20 C 1.41314 * 119.78428 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00053 * 353.78218 * 20 19 18 22 22 C 1.40022 * 119.99981 * 173.78485 * 20 19 18 23 23 N 1.30750 * 119.99678 * 6.34961 * 22 20 19 24 24 Si 1.86796 * 120.00110 * 186.34875 * 22 20 19 25 25 H 1.48506 * 109.46802 * 94.98567 * 24 22 20 26 26 H 1.48501 * 109.47176 * 214.98523 * 24 22 20 27 27 H 1.48497 * 109.47075 * 334.98856 * 24 22 20 28 28 N 1.31962 * 119.58325 * 179.73132 * 15 14 12 29 29 H 1.09004 * 109.46894 * 300.00129 * 1 2 3 30 30 H 1.09000 * 109.46909 * 59.99378 * 1 2 3 31 31 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.04959 * 0.06072 * 4 3 2 33 33 H 1.08005 * 119.98766 * 179.80896 * 5 4 3 34 34 H 1.07995 * 119.79932 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.67675 * 289.38607 * 10 9 8 36 36 H 1.08991 * 109.70947 * 168.85888 * 10 9 8 37 37 H 1.09005 * 109.69499 * 175.67133 * 11 10 9 38 38 H 1.09000 * 109.70472 * 55.07303 * 11 10 9 39 39 H 0.96996 * 120.00265 * 95.00231 * 14 12 7 40 40 H 1.07998 * 120.25400 * 0.02562 * 16 15 14 41 41 H 1.07998 * 120.66046 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.42277 * 179.97438 * 18 17 16 43 43 H 0.97001 * 119.99643 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2914 2.3717 0.0005 5 6 1.9200 3.6030 0.0000 6 6 3.2991 3.6748 -0.0031 7 6 4.0619 2.5176 -0.0051 8 6 3.4400 1.2832 -0.0007 9 8 4.1491 0.1234 0.0098 10 6 5.5274 0.1802 -0.3605 11 6 6.1933 1.3166 0.4258 12 6 5.5647 2.6401 -0.0171 13 1 5.9009 2.8819 -1.0254 14 7 5.9743 3.7050 0.9019 15 6 5.9959 5.0242 0.4701 16 6 5.6247 5.3267 -0.8434 17 6 5.6465 6.6444 -1.2722 18 6 6.0388 7.6269 -0.3800 19 6 6.4006 7.2594 0.9276 20 6 6.8027 8.2517 1.8498 21 1 6.9281 9.2734 1.5232 22 6 7.0384 7.9103 3.1872 23 7 7.0081 6.6565 3.5568 24 14 7.3963 9.2460 4.4430 25 1 6.1372 9.6278 5.1319 26 1 8.3723 8.7388 5.4407 27 1 7.9635 10.4333 3.7548 28 7 6.3611 5.9775 1.3063 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2129 2.3150 0.0019 33 1 1.3322 4.5091 -0.0027 34 1 3.7864 4.6386 -0.0039 35 1 5.6125 0.3744 -1.4297 36 1 6.0119 -0.7660 -0.1197 37 1 7.2631 1.3300 0.2171 38 1 6.0285 1.1706 1.4934 39 1 6.2304 3.4883 1.8120 40 1 5.3224 4.5397 -1.5184 41 1 5.3639 6.8994 -2.2829 42 1 6.0665 8.6627 -0.6845 43 1 7.1719 6.4200 4.4832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261553030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:11 Heat of formation + Delta-G solvation = 2.060043 kcal Electronic energy + Delta-G solvation = -27582.359137 eV Core-core repulsion = 23786.499653 eV Total energy + Delta-G solvation = -3795.859484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85623 -38.93198 -38.27982 -36.75001 -35.50804 -33.47908 -31.81566 -30.64038 -30.24232 -29.49190 -28.46574 -27.23657 -25.48159 -24.68049 -23.56096 -21.98310 -21.45809 -20.59474 -19.80667 -18.05221 -17.36124 -17.33162 -16.60912 -16.19480 -15.87584 -15.34475 -14.98042 -14.84843 -14.76549 -14.56691 -14.27326 -13.93663 -13.45404 -13.19400 -13.06344 -12.77993 -12.57637 -12.45654 -12.00722 -11.87517 -11.65329 -11.47518 -11.23640 -11.03752 -10.97865 -10.89715 -10.74674 -10.62819 -10.45561 -10.39627 -9.94109 -9.54892 -8.97316 -8.35888 -7.95020 -7.65787 -7.54453 -6.58006 -6.37118 -4.50158 1.43089 1.67732 2.83561 3.10180 3.13433 3.17689 3.24647 3.31794 3.36427 3.82913 3.96608 4.19490 4.71777 4.74573 4.86382 4.89352 4.97391 5.08196 5.13508 5.19767 5.24959 5.38331 5.42383 5.54616 5.61027 5.72353 5.82437 5.94979 6.03407 6.05509 6.12861 6.36575 6.53972 6.69345 6.78864 6.83851 6.88009 6.90151 6.94892 7.16763 7.21470 7.54980 7.72599 7.76387 7.87644 8.13040 8.30702 8.62617 8.76292 9.07109 10.20030 10.36257 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.003332 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.875593 B = 8400.976849 C = 8584.639284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.086 3.914 4 C -0.179 4.179 5 C -0.119 4.119 6 C -0.098 4.098 7 C -0.138 4.138 8 C 0.105 3.895 9 O -0.309 6.309 10 C 0.067 3.933 11 C -0.166 4.166 12 C 0.210 3.790 13 H 0.092 0.908 14 N -0.726 5.726 15 C 0.413 3.587 16 C -0.371 4.371 17 C -0.031 4.031 18 C -0.315 4.315 19 C 0.292 3.708 20 C -0.433 4.433 21 H 0.083 0.917 22 C 0.071 3.929 23 N -0.714 5.714 24 Si 0.905 3.095 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.262 1.262 28 N -0.530 5.530 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.398 0.602 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -11.878 -5.131 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.138 4.138 6 C -0.116 4.116 7 C -0.141 4.141 8 C 0.060 3.940 9 O -0.223 6.223 10 C -0.009 4.009 11 C -0.204 4.204 12 C 0.102 3.898 13 H 0.109 0.891 14 N -0.361 5.361 15 C 0.173 3.827 16 C -0.397 4.397 17 C -0.055 4.055 18 C -0.338 4.338 19 C 0.166 3.834 20 C -0.465 4.465 21 H 0.102 0.898 22 C -0.154 4.154 23 N -0.335 5.335 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.186 1.186 28 N -0.251 5.251 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.179 -12.639 -4.215 15.135 hybrid contribution -0.238 1.064 0.017 1.090 sum -7.417 -11.575 -4.198 14.375 Atomic orbital electron populations 1.22993 0.79206 1.03449 1.01046 1.86132 1.20464 1.26287 1.89494 1.18327 0.89268 0.84885 1.03456 1.20992 0.99457 0.91811 1.07539 1.20885 0.94840 0.96743 1.01311 1.21627 0.93323 0.99725 0.96962 1.20405 0.97439 0.91401 1.04888 1.17910 0.87731 0.85353 1.03031 1.86046 1.23135 1.28857 1.84253 1.22918 0.79541 0.99768 0.98704 1.22495 1.01516 0.94413 1.02010 1.19352 0.87908 0.87106 0.95388 0.89054 1.44137 1.75363 1.02495 1.14143 1.18497 0.89797 0.85450 0.88955 1.20638 1.25679 0.96444 0.96922 1.20596 0.95233 0.92804 0.96866 1.21546 1.17560 0.97855 0.96869 1.18194 0.87177 0.88600 0.89436 1.19599 1.38993 0.95238 0.92644 0.89843 1.26049 0.93853 0.95866 0.99632 1.70148 1.28879 1.17310 1.17158 0.86362 0.78906 0.81621 0.80193 1.19560 1.20231 1.18559 1.68222 1.24601 0.99459 1.32855 0.92963 0.92988 0.88601 0.85372 0.85847 0.83076 0.91793 0.87377 0.89125 0.89907 0.76663 0.88909 0.88904 0.88699 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.42 10.21 -35.79 -0.37 -4.79 16 3 C 0.09 1.33 6.70 -39.03 -0.26 1.07 16 4 C -0.18 -2.53 9.03 -39.51 -0.36 -2.89 16 5 C -0.12 -1.86 10.04 -39.63 -0.40 -2.26 16 6 C -0.10 -1.75 8.60 -39.50 -0.34 -2.09 16 7 C -0.14 -2.33 5.53 -104.46 -0.58 -2.91 16 8 C 0.11 1.72 6.48 -39.10 -0.25 1.47 16 9 O -0.31 -4.68 10.00 -35.62 -0.36 -5.04 16 10 C 0.07 0.76 7.03 37.37 0.26 1.02 16 11 C -0.17 -2.11 5.67 -26.49 -0.15 -2.26 16 12 C 0.21 3.37 2.46 -69.01 -0.17 3.20 16 13 H 0.09 1.48 6.43 -51.93 -0.33 1.14 16 14 N -0.73 -14.20 5.00 -54.95 -0.27 -14.47 16 15 C 0.41 9.62 6.47 -155.31 -1.01 8.62 16 16 C -0.37 -8.12 6.96 -38.87 -0.27 -8.39 16 17 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 18 C -0.32 -7.76 9.83 -38.65 -0.38 -8.14 16 19 C 0.29 7.95 6.54 -85.00 -0.56 7.39 16 20 C -0.43 -11.54 9.13 -37.74 -0.34 -11.88 16 21 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 22 C 0.07 1.80 5.49 -17.34 -0.10 1.71 16 23 N -0.71 -18.71 11.48 55.55 0.64 -18.08 16 24 Si 0.90 18.57 29.56 -169.99 -5.03 13.55 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 28 N -0.53 -14.21 7.91 -10.32 -0.08 -14.29 16 29 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 30 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 1.42 6.28 -52.49 -0.33 1.09 16 33 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.15 3.09 4.19 -52.49 -0.22 2.87 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 39 H 0.40 7.91 8.70 -40.82 -0.36 7.55 16 40 H 0.09 1.85 5.77 -52.49 -0.30 1.55 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -30.66 349.11 -9.77 -40.44 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.26 Total: 13.59 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -4.31 Total: -16.17 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.28 Total: -46.84 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.72 Total: -9.82 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.66 -9.77 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261553030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.499 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds