Wall clock time and date at job start Tue Mar 31 2020 14:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 117.00146 * 2 1 4 4 C 1.38415 * 119.93887 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.89518 * 180.02562 * 4 3 2 6 6 C 1.38106 * 120.02587 * 0.09683 * 5 4 3 7 7 C 1.38598 * 120.41159 * 359.97438 * 6 5 4 8 8 C 1.38230 * 119.86880 * 359.83697 * 7 6 5 9 9 O 1.35936 * 121.81951 * 180.60777 * 8 7 6 10 10 C 1.42826 * 117.87108 * 342.64556 * 9 8 7 11 11 C 1.53404 * 108.38693 * 49.11249 * 10 9 8 12 12 C 1.50775 * 118.73319 * 179.62667 * 7 6 5 13 13 H 1.09002 * 109.43874 * 282.15332 * 12 7 6 14 14 N 1.46503 * 109.43335 * 42.06574 * 12 7 6 15 15 C 1.38826 * 119.99833 * 274.99652 * 14 12 7 16 16 C 1.39801 * 119.58467 * 0.02562 * 15 14 12 17 17 C 1.38592 * 119.48991 * 179.97438 * 16 15 14 18 18 C 1.38392 * 118.68203 * 0.02562 * 17 16 15 19 19 C 1.40560 * 119.15001 * 359.97438 * 18 17 16 20 20 C 1.41314 * 119.78428 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00053 * 353.78218 * 20 19 18 22 22 C 1.40022 * 119.99981 * 173.78485 * 20 19 18 23 23 N 1.30750 * 119.99678 * 6.34961 * 22 20 19 24 24 Si 1.86796 * 120.00110 * 186.34875 * 22 20 19 25 25 H 1.48506 * 109.46802 * 94.98567 * 24 22 20 26 26 H 1.48501 * 109.47176 * 214.98523 * 24 22 20 27 27 H 1.48497 * 109.47075 * 334.98856 * 24 22 20 28 28 N 1.31962 * 119.58325 * 179.73132 * 15 14 12 29 29 H 1.09004 * 109.46894 * 300.00129 * 1 2 3 30 30 H 1.09000 * 109.46909 * 59.99378 * 1 2 3 31 31 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.04959 * 0.06072 * 4 3 2 33 33 H 1.08005 * 119.98766 * 179.80896 * 5 4 3 34 34 H 1.07995 * 119.79932 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.67675 * 289.38607 * 10 9 8 36 36 H 1.08991 * 109.70947 * 168.85888 * 10 9 8 37 37 H 1.09005 * 109.69499 * 175.67133 * 11 10 9 38 38 H 1.09000 * 109.70472 * 55.07303 * 11 10 9 39 39 H 0.96996 * 120.00265 * 95.00231 * 14 12 7 40 40 H 1.07998 * 120.25400 * 0.02562 * 16 15 14 41 41 H 1.07998 * 120.66046 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.42277 * 179.97438 * 18 17 16 43 43 H 0.97001 * 119.99643 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2914 2.3717 0.0005 5 6 1.9200 3.6030 0.0000 6 6 3.2991 3.6748 -0.0031 7 6 4.0619 2.5176 -0.0051 8 6 3.4400 1.2832 -0.0007 9 8 4.1491 0.1234 0.0098 10 6 5.5274 0.1802 -0.3605 11 6 6.1933 1.3166 0.4258 12 6 5.5647 2.6401 -0.0171 13 1 5.9009 2.8819 -1.0254 14 7 5.9743 3.7050 0.9019 15 6 5.9959 5.0242 0.4701 16 6 5.6247 5.3267 -0.8434 17 6 5.6465 6.6444 -1.2722 18 6 6.0388 7.6269 -0.3800 19 6 6.4006 7.2594 0.9276 20 6 6.8027 8.2517 1.8498 21 1 6.9281 9.2734 1.5232 22 6 7.0384 7.9103 3.1872 23 7 7.0081 6.6565 3.5568 24 14 7.3963 9.2460 4.4430 25 1 6.1372 9.6278 5.1319 26 1 8.3723 8.7388 5.4407 27 1 7.9635 10.4333 3.7548 28 7 6.3611 5.9775 1.3063 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2129 2.3150 0.0019 33 1 1.3322 4.5091 -0.0027 34 1 3.7864 4.6386 -0.0039 35 1 5.6125 0.3744 -1.4297 36 1 6.0119 -0.7660 -0.1197 37 1 7.2631 1.3300 0.2171 38 1 6.0285 1.1706 1.4934 39 1 6.2304 3.4883 1.8120 40 1 5.3224 4.5397 -1.5184 41 1 5.3639 6.8994 -2.2829 42 1 6.0665 8.6627 -0.6845 43 1 7.1719 6.4200 4.4832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261553030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:10 Heat of formation + Delta-G solvation = -15.621087 kcal Electronic energy + Delta-G solvation = -27583.125848 eV Core-core repulsion = 23786.499653 eV Total energy + Delta-G solvation = -3796.626196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03012 -40.28163 -39.72143 -37.99295 -36.91781 -35.28511 -33.27789 -32.22175 -31.64657 -30.67178 -30.13451 -28.12342 -27.31488 -25.91965 -24.73346 -23.45058 -23.02658 -22.24413 -21.02840 -19.40237 -18.97306 -18.55929 -17.84085 -17.66785 -16.99139 -16.61574 -16.51573 -16.36854 -15.97639 -15.86961 -15.59333 -15.19834 -15.15915 -14.69963 -14.23513 -14.10848 -13.99452 -13.71586 -13.56448 -13.06838 -13.00310 -12.72326 -12.64528 -12.62270 -12.53641 -12.22702 -12.03052 -11.94035 -11.75131 -11.68472 -11.60823 -11.29304 -10.71566 -9.82699 -9.56348 -9.44134 -8.82433 -8.33102 -8.23876 -6.46374 0.23065 0.44483 1.05198 1.34662 1.41505 1.55078 1.57356 2.24759 2.26909 2.33130 2.53928 2.82571 2.91919 3.61085 3.68950 3.81074 3.99675 4.05538 4.11393 4.18004 4.24763 4.37182 4.42492 4.42912 4.44068 4.56223 4.61749 4.69754 4.75123 4.77170 4.91535 4.96481 4.99112 5.01459 5.13470 5.18892 5.36002 5.43735 5.61198 5.69967 5.72257 5.96843 6.06543 6.13964 6.22676 6.53061 6.63102 6.82481 6.91157 7.20335 8.33847 8.50792 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.003332 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.875593 B = 8400.976849 C = 8584.639284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.081 3.919 4 C -0.171 4.171 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.147 4.147 8 C 0.095 3.905 9 O -0.320 6.320 10 C 0.065 3.935 11 C -0.158 4.158 12 C 0.207 3.793 13 H 0.091 0.909 14 N -0.721 5.721 15 C 0.404 3.596 16 C -0.359 4.359 17 C -0.029 4.029 18 C -0.341 4.341 19 C 0.261 3.739 20 C -0.471 4.471 21 H 0.086 0.914 22 C 0.028 3.972 23 N -0.750 5.750 24 Si 0.984 3.016 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.256 1.256 28 N -0.564 5.564 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.162 0.838 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.394 0.606 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -13.406 -5.600 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.036 3.964 4 C -0.189 4.189 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.149 4.149 8 C 0.049 3.951 9 O -0.235 6.235 10 C -0.010 4.010 11 C -0.196 4.196 12 C 0.101 3.899 13 H 0.108 0.892 14 N -0.354 5.354 15 C 0.163 3.837 16 C -0.384 4.384 17 C -0.053 4.053 18 C -0.364 4.364 19 C 0.135 3.865 20 C -0.503 4.503 21 H 0.104 0.896 22 C -0.194 4.194 23 N -0.372 5.372 24 Si 0.804 3.196 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.179 1.179 28 N -0.286 5.286 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.228 0.772 40 H 0.131 0.869 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.228 -14.214 -4.717 17.088 hybrid contribution -0.045 1.338 0.045 1.340 sum -8.273 -12.876 -4.672 16.002 Atomic orbital electron populations 1.23352 0.76661 1.05536 1.02150 1.86116 1.23114 1.25646 1.89199 1.18553 0.89382 0.85838 1.02663 1.21270 1.01032 0.90636 1.05980 1.21069 0.94145 0.98115 1.00930 1.21456 0.94549 0.98745 0.99612 1.20348 0.97484 0.91538 1.05573 1.18048 0.88559 0.85360 1.03114 1.86032 1.24724 1.28352 1.84345 1.23221 0.77865 1.00713 0.99208 1.22467 1.02461 0.92894 1.01767 1.19582 0.88133 0.87567 0.94624 0.89169 1.44266 1.74650 1.02013 1.14497 1.18833 0.89213 0.86290 0.89347 1.20859 1.23943 0.96967 0.96645 1.20973 0.93900 0.92425 0.98035 1.21675 1.19149 0.98845 0.96760 1.18633 0.87933 0.89230 0.90749 1.19924 1.40877 0.95490 0.93993 0.89638 1.26921 0.93089 0.98286 1.01136 1.70245 1.29787 1.19329 1.17868 0.85179 0.78792 0.78399 0.77192 1.19150 1.19322 1.17941 1.68183 1.26087 1.00020 1.34337 0.92026 0.91582 0.86220 0.82108 0.84583 0.86082 0.90527 0.84029 0.87297 0.90580 0.77188 0.86853 0.85530 0.88064 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.56 10.21 -78.10 -0.80 -9.36 16 3 C 0.08 2.38 6.70 22.63 0.15 2.53 16 4 C -0.17 -4.48 9.03 22.31 0.20 -4.28 16 5 C -0.12 -3.79 10.04 22.24 0.22 -3.56 16 6 C -0.13 -4.51 8.60 22.32 0.19 -4.32 16 7 C -0.15 -4.90 5.53 -19.76 -0.11 -5.00 16 8 C 0.10 3.00 6.48 22.58 0.15 3.15 16 9 O -0.32 -9.14 10.00 -77.46 -0.77 -9.91 16 10 C 0.06 1.33 7.03 72.12 0.51 1.83 16 11 C -0.16 -3.78 5.67 30.75 0.17 -3.61 16 12 C 0.21 6.58 2.46 44.29 0.11 6.68 16 13 H 0.09 2.85 6.43 -2.39 -0.02 2.84 16 14 N -0.72 -28.81 5.00 -327.78 -1.64 -30.44 16 15 C 0.40 19.34 6.47 133.42 0.86 20.21 16 16 C -0.36 -15.80 6.96 22.73 0.16 -15.64 16 17 C -0.03 -1.30 10.15 22.39 0.23 -1.08 16 18 C -0.34 -17.29 9.83 22.87 0.22 -17.06 16 19 C 0.26 14.81 6.54 40.18 0.26 15.07 16 20 C -0.47 -26.14 9.13 23.46 0.21 -25.92 16 21 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 22 C 0.03 1.43 5.49 85.29 0.47 1.90 16 23 N -0.75 -40.73 11.48 21.84 0.25 -40.48 16 24 Si 0.98 38.90 29.56 68.60 2.03 40.93 16 25 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 28 N -0.56 -31.49 7.91 -186.57 -1.48 -32.97 16 29 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 30 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.16 3.04 6.28 -2.91 -0.02 3.02 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.12 5.09 4.19 -2.91 -0.01 5.08 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.14 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.08 1.94 8.11 -2.39 -0.02 1.92 16 39 H 0.39 16.20 8.70 -92.71 -0.81 15.39 16 40 H 0.11 4.46 5.77 -2.91 -0.02 4.45 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.28 13.57 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -69.49 349.11 2.97 -66.51 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: 0.26 Total: 43.44 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.13 Total: -27.72 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -2.86 Total: -103.89 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.57 Total: -19.27 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -69.49 2.97 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261553030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.892 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds