Wall clock time and date at job start Tue Mar 31 2020 14:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47537 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.46932 * 119.99758 * 3 2 1 6 6 H 1.48498 * 109.47037 * 239.99516 * 3 2 1 7 7 C 1.38809 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99569 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99860 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46889 * 175.01276 * 10 9 7 12 12 H 1.09000 * 109.87595 * 304.77791 * 11 10 9 13 13 C 1.54327 * 109.88354 * 65.79487 * 11 10 9 14 14 C 1.55158 * 102.94351 * 141.61087 * 13 11 10 15 15 C 1.54913 * 101.57965 * 324.49773 * 14 13 11 16 16 N 1.47029 * 109.88245 * 183.60183 * 11 10 9 17 17 C 1.34773 * 125.64775 * 61.61924 * 16 11 10 18 18 O 1.21549 * 120.00016 * 5.32763 * 17 16 11 19 19 C 1.47890 * 119.99875 * 185.32283 * 17 16 11 20 20 N 1.32137 * 120.03648 * 0.02562 * 19 17 16 21 21 C 1.31978 * 122.76972 * 180.02562 * 20 19 17 22 22 C 1.37778 * 121.72779 * 359.97438 * 21 20 19 23 23 C 1.40381 * 118.73336 * 0.02562 * 22 21 20 24 24 C 1.40637 * 122.28566 * 180.02562 * 23 22 21 25 25 C 1.36644 * 117.95066 * 179.97438 * 24 23 22 26 26 C 1.39395 * 119.93041 * 359.97438 * 25 24 23 27 27 N 1.31211 * 121.85203 * 0.02729 * 26 25 24 28 28 C 1.33260 * 121.21853 * 359.65535 * 27 26 25 29 29 H 0.96993 * 119.99695 * 179.97438 * 1 2 3 30 30 H 0.96993 * 119.99669 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.46829 * 295.00601 * 10 9 7 32 32 H 1.08995 * 109.47476 * 55.01170 * 10 9 7 33 33 H 1.09007 * 110.71936 * 259.97366 * 13 11 10 34 34 H 1.08997 * 110.72400 * 23.06851 * 13 11 10 35 35 H 1.08996 * 111.00346 * 82.57029 * 14 13 11 36 36 H 1.08997 * 111.00259 * 206.42138 * 14 13 11 37 37 H 1.08999 * 110.36460 * 155.85154 * 15 14 13 38 38 H 1.08997 * 110.36110 * 278.05868 * 15 14 13 39 39 H 1.08000 * 119.13270 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.63407 * 179.97438 * 22 21 20 41 41 H 1.07997 * 121.02484 * 359.95313 * 24 23 22 42 42 H 1.08008 * 120.03734 * 180.02562 * 25 24 23 43 43 H 1.07993 * 119.07723 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0685 -4.8169 0.1268 12 1 0.4478 -4.6805 1.0124 13 6 0.1787 -4.8859 -1.1322 14 6 0.0317 -6.4120 -1.3706 15 6 1.4256 -6.9303 -0.9367 16 7 1.7989 -6.0898 0.2155 17 6 2.6664 -6.4315 1.1887 18 8 2.8273 -5.6979 2.1444 19 6 3.4224 -7.6990 1.0938 20 7 3.2483 -8.4967 0.0549 21 6 3.8937 -9.6395 -0.0843 22 6 4.8009 -10.0784 0.8552 23 6 5.0383 -9.2829 1.9873 24 6 5.9483 -9.6583 2.9917 25 6 6.1110 -8.8164 4.0556 26 6 5.3858 -7.6276 4.1191 27 7 4.5381 -7.2826 3.1790 28 6 4.3375 -8.0556 2.1122 29 1 -0.4849 -0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6167 -3.7545 -0.9292 32 1 2.7494 -3.6764 0.8441 33 1 -0.7931 -4.4297 -0.9432 34 1 0.6702 -4.4063 -1.9787 35 1 -0.7540 -6.8316 -0.7424 36 1 -0.1550 -6.6269 -2.4227 37 1 1.3653 -7.9771 -0.6390 38 1 2.1447 -6.8078 -1.7466 39 1 3.7057 -10.2465 -0.9576 40 1 5.3189 -11.0169 0.7236 41 1 6.5011 -10.5836 2.9245 42 1 6.8015 -9.0712 4.8460 43 1 5.5255 -6.9722 4.9660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270221235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:09 Heat of formation + Delta-G solvation = 70.418923 kcal Electronic energy + Delta-G solvation = -27236.458514 eV Core-core repulsion = 23475.856044 eV Total energy + Delta-G solvation = -3760.602470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60269 -39.77513 -38.26431 -37.21233 -34.68289 -34.00368 -32.10398 -31.54603 -31.21285 -30.49037 -28.37203 -25.90947 -24.68275 -24.42989 -23.94473 -22.66279 -22.01986 -20.76742 -19.59903 -18.71464 -17.83459 -17.44720 -17.05138 -16.43674 -16.25574 -15.47072 -15.14998 -14.96216 -14.72084 -14.31144 -13.99666 -13.74172 -13.59578 -13.47241 -13.37948 -13.24309 -12.90230 -12.82167 -12.58226 -12.43680 -12.05914 -11.57626 -11.12892 -11.08518 -10.69295 -10.51843 -10.46217 -10.33640 -10.07225 -9.98077 -9.89593 -9.68529 -9.26946 -9.09635 -8.79428 -8.74898 -8.27136 -6.87619 -5.99226 -2.97398 -0.37074 0.34588 1.35446 2.46542 2.95394 3.15050 3.59635 3.64429 3.80992 3.81931 3.87114 3.93324 4.07436 4.23892 4.35848 4.45143 4.75821 4.77428 4.78447 4.83210 5.01887 5.05894 5.17108 5.20859 5.26243 5.51596 5.53377 5.61293 5.70175 5.73322 5.82016 5.88553 5.97971 6.02611 6.08493 6.17779 6.21992 6.23442 6.46529 6.60627 6.87215 7.02826 7.31828 7.62432 7.76649 7.93659 8.40513 8.87319 9.35098 10.21104 10.36658 11.49797 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003257 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.365154 B = 8595.488886 C =10035.107525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.047 4.047 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.324 4.324 8 H 0.063 0.937 9 N -0.739 5.739 10 C 0.152 3.848 11 C 0.130 3.870 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.138 4.138 15 C 0.111 3.889 16 N -0.595 5.595 17 C 0.572 3.428 18 O -0.484 6.484 19 C 0.153 3.847 20 N -0.440 5.440 21 C 0.072 3.928 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.154 4.154 26 C 0.132 3.868 27 N -0.418 5.418 28 C 0.106 3.894 29 H 0.254 0.746 30 H 0.366 0.634 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 -28.056 1.837 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.244 4.244 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.455 4.455 8 H 0.081 0.919 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.028 3.972 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.177 4.177 15 C -0.012 4.012 16 N -0.330 5.330 17 C 0.357 3.643 18 O -0.355 6.355 19 C 0.000 4.000 20 N -0.153 5.153 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.175 4.175 26 C -0.042 4.042 27 N -0.126 5.126 28 C -0.019 4.019 29 H 0.065 0.935 30 H 0.199 0.801 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.183 0.817 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.051 -25.048 1.692 26.687 hybrid contribution 1.184 -2.929 0.520 3.202 sum 10.234 -27.978 2.212 29.873 Atomic orbital electron populations 1.70878 1.05959 1.28271 1.54188 1.25754 0.97093 1.00857 1.00722 0.83232 0.74170 0.75579 0.75838 1.21061 1.22301 1.22360 1.20034 0.92024 0.85719 1.47725 0.91896 1.42203 1.04752 1.00684 1.90828 1.20871 0.93560 0.84661 0.98498 1.21852 0.93446 0.83268 0.98676 0.90526 1.22674 1.00148 0.95615 0.97589 1.22876 0.96858 0.96200 1.01719 1.22465 0.95024 0.95628 0.88065 1.48311 1.42572 1.17733 1.24342 1.17199 0.79956 0.84520 0.82671 1.90922 1.63584 1.50608 1.30336 1.21548 0.94206 0.94852 0.89400 1.67667 1.22409 1.04217 1.21017 1.22652 0.93089 0.92671 0.99003 1.22362 0.98683 1.00199 0.93424 1.18972 0.98071 0.95413 0.96683 1.21406 0.95595 0.99731 0.92464 1.22153 1.00581 0.95599 0.99197 1.23388 0.89962 0.94132 0.96693 1.68358 1.14442 1.29961 0.99817 1.19477 0.96476 0.91388 0.94512 0.93509 0.80053 0.96647 0.94496 0.90089 0.89968 0.91029 0.90077 0.89052 0.91513 0.81668 0.83710 0.83740 0.83853 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.46 13.70 55.49 0.76 -29.70 16 2 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 3 Si 1.08 27.35 29.92 -169.99 -5.09 22.26 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.32 -9.86 9.99 -15.06 -0.15 -10.01 16 8 H 0.06 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.74 -20.24 5.44 -59.91 -0.33 -20.57 16 10 C 0.15 3.60 5.64 -4.04 -0.02 3.58 16 11 C 0.13 2.49 2.94 -66.95 -0.20 2.30 16 12 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 13 C -0.12 -1.93 6.02 -24.89 -0.15 -2.08 16 14 C -0.14 -1.67 7.09 -24.58 -0.17 -1.84 16 15 C 0.11 1.47 5.74 -2.53 -0.01 1.45 16 16 N -0.59 -10.24 3.06 -164.10 -0.50 -10.74 16 17 C 0.57 10.70 7.56 -12.31 -0.09 10.61 16 18 O -0.48 -10.81 14.40 5.32 0.08 -10.73 16 19 C 0.15 2.36 6.78 -82.55 -0.56 1.80 16 20 N -0.44 -5.42 6.70 -9.55 -0.06 -5.49 16 21 C 0.07 0.62 11.12 -17.66 -0.20 0.42 16 22 C -0.13 -0.96 9.93 -38.94 -0.39 -1.34 16 23 C -0.08 -0.86 5.75 -106.79 -0.61 -1.47 16 24 C -0.07 -0.48 9.94 -39.25 -0.39 -0.87 16 25 C -0.15 -1.11 10.03 -39.73 -0.40 -1.51 16 26 C 0.13 1.40 11.14 -17.39 -0.19 1.20 16 27 N -0.42 -6.43 8.49 -10.74 -0.09 -6.52 16 28 C 0.11 1.53 6.61 -84.62 -0.56 0.97 16 29 H 0.25 8.01 6.77 -40.82 -0.28 7.74 16 30 H 0.37 9.98 6.24 -40.82 -0.25 9.72 16 31 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.04 0.98 6.93 -51.93 -0.36 0.62 16 33 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 34 H 0.08 1.39 7.79 -51.93 -0.40 0.98 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.10 6.28 -51.93 -0.33 0.77 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -39.19 355.72 -9.54 -48.73 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.47 Total: 5.75 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -4.20 Total: 1.65 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.22 Total: -73.02 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -5.09 Total: 22.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.19 -9.54 -48.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270221235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.151 kcal (2) G-P(sol) polarization free energy of solvation -39.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds