Wall clock time and date at job start Tue Mar 31 2020 15:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00331 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00843 * 3 2 1 5 5 H 1.48504 * 109.46660 * 30.00052 * 3 2 1 6 6 H 1.48491 * 109.47237 * 150.00098 * 3 2 1 7 7 C 1.37882 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99905 * 0.27373 * 7 2 1 10 10 N 1.46905 * 109.47098 * 179.72593 * 9 7 2 11 11 C 1.47664 * 111.00048 * 266.27898 * 10 9 7 12 12 C 1.52552 * 87.65371 * 222.04290 * 11 10 9 13 13 C 1.52524 * 121.71269 * 149.57924 * 12 11 10 14 14 C 1.53679 * 82.99996 * 102.33424 * 13 12 11 15 15 N 1.46008 * 121.84414 * 260.94300 * 12 11 10 16 16 C 1.34774 * 136.22985 * 78.75130 * 15 12 11 17 17 O 1.21593 * 119.99643 * 0.50431 * 16 15 12 18 18 C 1.47524 * 120.00495 * 180.50255 * 16 15 12 19 19 C 1.39440 * 120.24266 * 7.20603 * 18 16 15 20 20 C 1.38287 * 120.27793 * 179.97438 * 19 18 16 21 21 C 1.37883 * 120.72921 * 0.02562 * 20 19 18 22 22 C 1.39683 * 120.10757 * 359.97438 * 21 20 19 23 23 N 1.35854 * 133.51757 * 180.02562 * 22 21 20 24 24 C 1.30083 * 109.53717 * 179.97438 * 23 22 21 25 25 N 1.36116 * 110.05311 * 0.02562 * 24 23 22 26 26 H 0.96997 * 126.31448 * 179.97438 * 25 24 23 27 27 C 1.37519 * 107.38114 * 359.76146 * 25 24 23 28 28 C 1.47661 * 111.00401 * 169.99768 * 10 9 7 29 29 H 0.96997 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47010 * 299.72190 * 9 7 2 31 31 H 1.08999 * 109.47355 * 59.72920 * 9 7 2 32 32 H 1.09003 * 113.52294 * 336.73672 * 11 10 9 33 33 H 1.08998 * 113.52091 * 107.34481 * 11 10 9 34 34 H 1.09002 * 114.28843 * 215.87166 * 13 12 11 35 35 H 1.09004 * 114.29002 * 348.79922 * 13 12 11 36 36 H 1.09003 * 113.41695 * 270.29512 * 14 13 12 37 37 H 1.08993 * 113.42321 * 140.00232 * 14 13 12 38 38 H 1.07991 * 119.86200 * 359.97080 * 19 18 16 39 39 H 1.07998 * 119.63750 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.94978 * 179.97438 * 21 20 19 41 41 H 1.08000 * 124.97155 * 180.02562 * 24 23 22 42 42 H 1.08997 * 113.52451 * 252.65606 * 28 10 9 43 43 H 1.09008 * 113.51991 * 23.25860 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0074 10 7 2.2055 -3.6157 -0.0132 11 6 2.4814 -4.0689 -1.3912 12 6 2.4022 -5.5002 -0.8695 13 6 1.9226 -6.6493 -1.7504 14 6 3.4254 -6.9568 -1.8431 15 7 3.6003 -6.2716 -0.5512 16 6 4.4771 -6.3302 0.4706 17 8 4.3333 -5.6068 1.4373 18 6 5.6113 -7.2721 0.4164 19 6 5.8687 -7.9952 -0.7477 20 6 6.9319 -8.8779 -0.7995 21 6 7.7520 -9.0580 0.2942 22 6 7.5155 -8.3457 1.4723 23 7 8.1314 -8.3083 2.6826 24 6 7.5149 -7.4658 3.4586 25 7 6.4632 -6.9073 2.7992 26 1 5.8453 -6.2501 3.1556 27 6 6.4410 -7.4431 1.5328 28 6 1.5175 -4.9014 0.2195 29 1 -0.4850 0.8400 0.0004 30 1 0.6243 -2.5615 0.8824 31 1 0.6243 -2.5522 -0.8976 32 1 1.6900 -3.8191 -2.0980 33 1 3.4722 -3.7910 -1.7504 34 1 1.3417 -7.4062 -1.2232 35 1 1.4703 -6.3347 -2.6909 36 1 3.9207 -6.4512 -2.6721 37 1 3.6530 -8.0220 -1.8029 38 1 5.2350 -7.8654 -1.6125 39 1 7.1221 -9.4323 -1.7066 40 1 8.5786 -9.7510 0.2400 41 1 7.7963 -7.2422 4.4771 42 1 1.7015 -5.3204 1.2088 43 1 0.4593 -4.8820 -0.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:42 Heat of formation + Delta-G solvation = 133.013559 kcal Electronic energy + Delta-G solvation = -27271.938335 eV Core-core repulsion = 23514.050173 eV Total energy + Delta-G solvation = -3757.888163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33915 -41.17984 -38.55394 -37.12313 -36.62341 -33.22656 -32.77368 -31.00551 -29.75532 -29.15750 -28.74382 -25.55844 -25.24852 -24.38327 -23.02957 -22.59940 -22.09523 -21.19938 -20.39386 -18.36317 -17.89367 -17.29977 -16.49161 -16.40143 -15.86066 -15.80487 -15.48280 -15.35865 -14.80118 -14.47576 -14.15293 -14.09757 -13.86893 -13.60601 -13.23927 -12.92807 -12.67673 -12.21982 -12.17371 -12.08129 -11.94760 -11.79409 -11.65078 -11.08034 -10.99638 -10.87191 -10.62631 -10.45304 -10.40512 -10.18294 -9.65201 -9.57825 -9.21650 -8.68956 -8.57893 -8.42750 -8.35004 -7.77905 -6.03009 -4.03477 0.40299 1.27908 2.35968 2.72681 2.87367 3.08778 3.31825 3.37702 3.44054 3.72815 4.01814 4.17950 4.27503 4.43924 4.57939 4.66715 4.68067 4.80948 5.00321 5.02393 5.09818 5.12833 5.14269 5.18084 5.32317 5.47804 5.54626 5.64767 5.74064 5.80809 5.94502 6.01278 6.07063 6.12835 6.18334 6.20758 6.22250 6.49459 6.55310 6.64287 7.16393 7.19359 7.61937 7.67930 7.81839 7.88112 8.11933 8.24318 8.48219 9.04343 9.60466 11.08124 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.003182 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.521711 B = 8797.995760 C = 9919.717802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.159 3.841 10 N -0.451 5.451 11 C 0.016 3.984 12 C 0.129 3.871 13 C -0.140 4.140 14 C 0.093 3.907 15 N -0.611 5.611 16 C 0.584 3.416 17 O -0.521 6.521 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.140 4.140 21 C -0.040 4.040 22 C 0.033 3.967 23 N -0.498 5.498 24 C 0.262 3.738 25 N -0.584 5.584 26 H 0.437 0.563 27 C 0.099 3.901 28 C 0.000 4.000 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.003 0.997 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.219 0.781 42 H 0.080 0.920 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -21.431 -3.334 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.033 3.967 10 N -0.173 5.173 11 C -0.115 4.115 12 C 0.043 3.957 13 C -0.178 4.178 14 C -0.029 4.029 15 N -0.344 5.344 16 C 0.375 3.625 17 O -0.398 6.398 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.161 4.161 21 C -0.059 4.059 22 C -0.085 4.085 23 N -0.218 5.218 24 C -0.026 4.026 25 N -0.195 5.195 26 H 0.279 0.721 27 C -0.015 4.015 28 C -0.130 4.130 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.235 0.765 42 H 0.099 0.901 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.285 -21.164 -1.937 24.063 hybrid contribution -1.231 1.798 -0.423 2.219 sum 10.054 -19.366 -2.360 21.948 Atomic orbital electron populations 1.69949 1.06034 1.26760 1.51372 1.24994 0.94886 0.99335 0.95490 0.86487 0.79871 0.83007 0.78032 1.20711 1.21216 1.19802 1.21097 0.93568 0.89774 1.49553 0.92009 1.20282 0.90643 0.89273 0.96547 1.69133 1.33357 1.01319 1.13487 1.23916 1.02452 0.90346 0.94760 1.22465 0.84684 0.92561 0.96030 1.23224 0.95535 0.98313 1.00777 1.23178 0.95747 0.98160 0.85855 1.49039 1.27571 1.39913 1.17920 1.17653 0.80359 0.82435 0.82086 1.90793 1.73544 1.43083 1.32352 1.18889 0.97606 1.02386 0.93454 1.21702 0.97255 0.94171 0.96662 1.20843 0.96001 1.00508 0.98715 1.20451 0.98761 0.97091 0.89641 1.19070 0.95063 0.99953 0.94404 1.70515 1.28698 1.20935 1.01652 1.25469 0.85596 0.92051 0.99446 1.43362 1.27850 1.37653 1.10632 0.72121 1.18626 0.98404 0.97857 0.86637 1.23816 0.96489 0.93620 0.99117 0.92953 0.95349 0.97912 0.90322 0.90529 0.88420 0.88712 0.89191 0.89681 0.83748 0.84656 0.84927 0.76497 0.90133 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -14.75 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.16 4.24 4.57 -4.98 -0.02 4.22 16 10 N -0.45 -10.29 6.31 -246.01 -1.55 -11.84 16 11 C 0.02 0.29 7.62 -6.90 -0.05 0.24 16 12 C 0.13 1.93 1.69 -140.73 -0.24 1.70 16 13 C -0.14 -1.35 8.28 -26.62 -0.22 -1.57 16 14 C 0.09 0.83 6.31 -10.27 -0.06 0.77 16 15 N -0.61 -8.62 3.69 -177.63 -0.65 -9.28 16 16 C 0.58 9.51 7.99 -12.48 -0.10 9.41 16 17 O -0.52 -10.39 15.56 5.28 0.08 -10.31 16 18 C -0.12 -1.59 5.88 -104.95 -0.62 -2.21 16 19 C -0.08 -0.79 9.18 -39.12 -0.36 -1.15 16 20 C -0.14 -1.21 9.99 -39.69 -0.40 -1.61 16 21 C -0.04 -0.41 10.09 -39.17 -0.40 -0.80 16 22 C 0.03 0.44 7.22 -84.71 -0.61 -0.18 16 23 N -0.50 -6.39 11.28 -12.05 -0.14 -6.53 16 24 C 0.26 2.70 12.97 -89.73 -1.16 1.53 16 25 N -0.58 -7.19 6.00 -11.57 -0.07 -7.26 16 26 H 0.44 5.33 7.75 -40.82 -0.32 5.01 16 27 C 0.10 1.37 6.88 -83.76 -0.58 0.80 16 28 C 0.00 -0.01 7.28 -6.91 -0.05 -0.06 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.00 0.08 7.31 -51.93 -0.38 -0.30 16 32 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.55 6.46 -51.93 -0.34 0.21 16 38 H 0.15 1.12 3.99 -52.49 -0.21 0.91 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.22 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.08 1.59 7.89 -51.93 -0.41 1.19 16 43 H 0.07 1.24 7.91 -51.92 -0.41 0.83 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -37.49 357.45 -11.89 -49.38 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.37 Total: 2.10 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -5.29 Total: -2.52 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.68 Total: -61.34 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.49 -11.89 -49.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.390 kcal (2) G-P(sol) polarization free energy of solvation -37.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds