Wall clock time and date at job start Tue Mar 31 2020 15:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00331 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00843 * 3 2 1 5 5 H 1.48504 * 109.46660 * 30.00052 * 3 2 1 6 6 H 1.48491 * 109.47237 * 150.00098 * 3 2 1 7 7 C 1.37882 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99905 * 0.27373 * 7 2 1 10 10 N 1.46905 * 109.47098 * 179.72593 * 9 7 2 11 11 C 1.47664 * 111.00048 * 266.27898 * 10 9 7 12 12 C 1.52552 * 87.65371 * 222.04290 * 11 10 9 13 13 C 1.52524 * 121.71269 * 149.57924 * 12 11 10 14 14 C 1.53679 * 82.99996 * 102.33424 * 13 12 11 15 15 N 1.46008 * 121.84414 * 260.94300 * 12 11 10 16 16 C 1.34774 * 136.22985 * 78.75130 * 15 12 11 17 17 O 1.21593 * 119.99643 * 0.50431 * 16 15 12 18 18 C 1.47524 * 120.00495 * 180.50255 * 16 15 12 19 19 C 1.39440 * 120.24266 * 7.20603 * 18 16 15 20 20 C 1.38287 * 120.27793 * 179.97438 * 19 18 16 21 21 C 1.37883 * 120.72921 * 0.02562 * 20 19 18 22 22 C 1.39683 * 120.10757 * 359.97438 * 21 20 19 23 23 N 1.35854 * 133.51757 * 180.02562 * 22 21 20 24 24 C 1.30083 * 109.53717 * 179.97438 * 23 22 21 25 25 N 1.36116 * 110.05311 * 0.02562 * 24 23 22 26 26 H 0.96997 * 126.31448 * 179.97438 * 25 24 23 27 27 C 1.37519 * 107.38114 * 359.76146 * 25 24 23 28 28 C 1.47661 * 111.00401 * 169.99768 * 10 9 7 29 29 H 0.96997 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47010 * 299.72190 * 9 7 2 31 31 H 1.08999 * 109.47355 * 59.72920 * 9 7 2 32 32 H 1.09003 * 113.52294 * 336.73672 * 11 10 9 33 33 H 1.08998 * 113.52091 * 107.34481 * 11 10 9 34 34 H 1.09002 * 114.28843 * 215.87166 * 13 12 11 35 35 H 1.09004 * 114.29002 * 348.79922 * 13 12 11 36 36 H 1.09003 * 113.41695 * 270.29512 * 14 13 12 37 37 H 1.08993 * 113.42321 * 140.00232 * 14 13 12 38 38 H 1.07991 * 119.86200 * 359.97080 * 19 18 16 39 39 H 1.07998 * 119.63750 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.94978 * 179.97438 * 21 20 19 41 41 H 1.08000 * 124.97155 * 180.02562 * 24 23 22 42 42 H 1.08997 * 113.52451 * 252.65606 * 28 10 9 43 43 H 1.09008 * 113.51991 * 23.25860 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0074 10 7 2.2055 -3.6157 -0.0132 11 6 2.4814 -4.0689 -1.3912 12 6 2.4022 -5.5002 -0.8695 13 6 1.9226 -6.6493 -1.7504 14 6 3.4254 -6.9568 -1.8431 15 7 3.6003 -6.2716 -0.5512 16 6 4.4771 -6.3302 0.4706 17 8 4.3333 -5.6068 1.4373 18 6 5.6113 -7.2721 0.4164 19 6 5.8687 -7.9952 -0.7477 20 6 6.9319 -8.8779 -0.7995 21 6 7.7520 -9.0580 0.2942 22 6 7.5155 -8.3457 1.4723 23 7 8.1314 -8.3083 2.6826 24 6 7.5149 -7.4658 3.4586 25 7 6.4632 -6.9073 2.7992 26 1 5.8453 -6.2501 3.1556 27 6 6.4410 -7.4431 1.5328 28 6 1.5175 -4.9014 0.2195 29 1 -0.4850 0.8400 0.0004 30 1 0.6243 -2.5615 0.8824 31 1 0.6243 -2.5522 -0.8976 32 1 1.6900 -3.8191 -2.0980 33 1 3.4722 -3.7910 -1.7504 34 1 1.3417 -7.4062 -1.2232 35 1 1.4703 -6.3347 -2.6909 36 1 3.9207 -6.4512 -2.6721 37 1 3.6530 -8.0220 -1.8029 38 1 5.2350 -7.8654 -1.6125 39 1 7.1221 -9.4323 -1.7066 40 1 8.5786 -9.7510 0.2400 41 1 7.7963 -7.2422 4.4771 42 1 1.7015 -5.3204 1.2088 43 1 0.4593 -4.8820 -0.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:41 Heat of formation + Delta-G solvation = 104.437947 kcal Electronic energy + Delta-G solvation = -27273.177467 eV Core-core repulsion = 23514.050173 eV Total energy + Delta-G solvation = -3759.127294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.19830 -42.37727 -39.80477 -38.06727 -37.87983 -34.99138 -34.09814 -32.04575 -30.76626 -30.42479 -30.04440 -27.05980 -26.98077 -25.27990 -24.37928 -23.49726 -23.04700 -22.32229 -21.86315 -19.39675 -18.78094 -18.68393 -18.23951 -17.41670 -17.15455 -16.95198 -16.64961 -16.29862 -16.28285 -15.79216 -15.44297 -15.36468 -15.04990 -14.68682 -14.57190 -14.40886 -13.84660 -13.58771 -13.43752 -13.05949 -13.04104 -12.98030 -12.82259 -12.75855 -12.44226 -12.39440 -12.13398 -11.91334 -11.77381 -11.46022 -11.35335 -11.04800 -10.74744 -10.66714 -9.77443 -9.54358 -9.45595 -9.22478 -8.28443 -6.38791 -0.44677 0.45975 1.33016 1.35246 1.44631 1.47275 1.71015 2.03317 2.08631 2.34017 2.84310 3.02540 3.10754 3.27132 3.35983 3.44620 3.52800 3.79077 3.87982 3.96849 4.24751 4.29453 4.30694 4.38290 4.39232 4.49989 4.54106 4.57835 4.60738 4.65491 4.77461 4.88382 4.92879 4.97665 5.00722 5.12445 5.25726 5.30320 5.37265 5.43607 5.53275 5.76050 5.80302 6.05393 6.32561 6.43926 6.74549 6.75560 6.77894 7.09461 7.30651 8.82471 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.003182 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.521711 B = 8797.995760 C = 9919.717802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.046 0.954 9 C 0.177 3.823 10 N -0.488 5.488 11 C 0.016 3.984 12 C 0.137 3.863 13 C -0.117 4.117 14 C 0.094 3.906 15 N -0.618 5.618 16 C 0.573 3.427 17 O -0.578 6.578 18 C -0.146 4.146 19 C -0.064 4.064 20 C -0.127 4.127 21 C -0.043 4.043 22 C 0.010 3.990 23 N -0.525 5.525 24 C 0.267 3.733 25 N -0.594 5.594 26 H 0.432 0.568 27 C 0.067 3.933 28 C -0.003 4.003 29 H 0.267 0.733 30 H -0.008 1.008 31 H -0.009 1.009 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.154 0.846 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 -23.444 -6.077 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.065 0.935 9 C 0.050 3.950 10 N -0.211 5.211 11 C -0.114 4.114 12 C 0.050 3.950 13 C -0.155 4.155 14 C -0.026 4.026 15 N -0.350 5.350 16 C 0.365 3.635 17 O -0.459 6.459 18 C -0.152 4.152 19 C -0.083 4.083 20 C -0.146 4.146 21 C -0.062 4.062 22 C -0.108 4.108 23 N -0.245 5.245 24 C -0.020 4.020 25 N -0.204 5.204 26 H 0.273 0.727 27 C -0.047 4.047 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.172 0.828 41 H 0.275 0.725 42 H 0.076 0.924 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.457 -23.227 -4.737 26.779 hybrid contribution -1.586 2.373 0.447 2.889 sum 10.871 -20.854 -4.289 23.906 Atomic orbital electron populations 1.70050 1.07458 1.28081 1.51420 1.25881 0.95851 1.03028 0.94542 0.85399 0.78245 0.78278 0.78794 1.19026 1.20064 1.20003 1.21346 0.93047 0.91620 1.50631 0.93534 1.19911 0.90537 0.90396 0.94108 1.69015 1.33043 1.01841 1.17152 1.23892 1.02072 0.92835 0.92599 1.22463 0.85043 0.92929 0.94579 1.23292 0.96590 0.95176 1.00402 1.23560 0.95171 1.00212 0.83673 1.49328 1.26568 1.39782 1.19338 1.18253 0.81007 0.82331 0.81861 1.90751 1.75047 1.45441 1.34631 1.18911 0.97460 1.03692 0.95115 1.22088 0.97542 0.92780 0.95900 1.21329 0.94290 0.99451 0.99569 1.20914 0.99534 0.96693 0.89089 1.19546 0.95151 1.00634 0.95461 1.70510 1.29593 1.22188 1.02194 1.26315 0.84376 0.90748 1.00579 1.43507 1.28317 1.37800 1.10824 0.72666 1.19032 0.99371 0.98909 0.87358 1.23813 0.97664 0.92150 0.99682 0.92409 0.98960 0.99085 0.89490 0.91353 0.86850 0.85959 0.86973 0.86007 0.81023 0.80158 0.82790 0.72507 0.92371 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 46.45 29.54 68.60 2.03 48.48 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.53 -32.40 9.39 25.60 0.24 -32.16 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.18 10.03 4.57 85.55 0.39 10.42 16 10 N -0.49 -23.51 6.31 -932.22 -5.88 -29.39 16 11 C 0.02 0.61 7.62 83.89 0.64 1.25 16 12 C 0.14 4.00 1.69 -0.97 0.00 4.00 16 13 C -0.12 -1.80 8.28 30.66 0.25 -1.54 16 14 C 0.09 1.27 6.31 81.92 0.52 1.78 16 15 N -0.62 -16.70 3.69 -834.15 -3.08 -19.77 16 16 C 0.57 19.05 7.99 86.69 0.69 19.74 16 17 O -0.58 -24.71 15.56 -4.01 -0.06 -24.77 16 18 C -0.15 -3.89 5.88 -20.08 -0.12 -4.01 16 19 C -0.06 -1.08 9.18 22.57 0.21 -0.88 16 20 C -0.13 -1.66 9.99 22.20 0.22 -1.44 16 21 C -0.04 -0.77 10.09 22.53 0.23 -0.55 16 22 C 0.01 0.25 7.22 39.41 0.28 0.54 16 23 N -0.52 -13.40 11.28 -192.03 -2.17 -15.56 16 24 C 0.27 5.57 12.97 180.04 2.34 7.91 16 25 N -0.59 -15.52 6.00 -190.51 -1.14 -16.67 16 26 H 0.43 11.72 7.75 -92.71 -0.72 11.00 16 27 C 0.07 1.90 6.88 39.25 0.27 2.17 16 28 C 0.00 -0.12 7.28 83.89 0.61 0.49 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H -0.01 -0.48 8.08 -2.39 -0.02 -0.50 16 31 H -0.01 -0.49 7.31 -2.39 -0.02 -0.51 16 32 H 0.09 3.05 7.42 -2.39 -0.02 3.03 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 0.83 6.46 -2.39 -0.02 0.81 16 38 H 0.17 1.78 3.99 -2.92 -0.01 1.77 16 39 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.26 2.57 8.06 -2.91 -0.02 2.54 16 42 H 0.06 2.48 7.89 -2.39 -0.02 2.46 16 43 H 0.08 2.90 7.91 -2.38 -0.02 2.88 16 Total: -1.00 -89.30 357.45 -2.44 -91.75 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.34 Total: 14.39 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 7.23 Total: 8.51 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -11.98 Total: -138.35 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.77 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -89.30 -2.44 -91.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.187 kcal (2) G-P(sol) polarization free energy of solvation -89.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds